- abortOnFirstJobFailure() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether seqexec trips on the first job failure.
- abortOnFristJobFailure() - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Returns a boolean indicating whether to fail the aggregated job on
detecting the first failure during execution of constituent jobs.
- abortOnFristJobFailure() - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Returns a boolean indicating whether to fail the aggregated job on
detecting the first failure during execution of constituent jobs.
- abortOnFristJobFailure() - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator
-
Returns a boolean indicating whether to fail the aggregated job on
detecting the first failure during execution of constituent jobs.
- Abstract - Class in edu.isi.pegasus.common.credential.impl
-
An abstract base class to be used by other CredentialHandler implementations.
- Abstract() - Constructor for class edu.isi.pegasus.common.credential.impl.Abstract
-
The default constructor.
- Abstract - Class in edu.isi.pegasus.planner.catalog.site.impl.old
-
An abstract implementation of the PoolInfoProvider.
- Abstract() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
- Abstract - Class in edu.isi.pegasus.planner.catalog.transformation.impl
-
An abstract base class that provides useful methods for all the
TransformationCatalog Implementations to use.
- Abstract() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.impl.Abstract
-
- Abstract - Class in edu.isi.pegasus.planner.cluster
-
An abstract clusterer that the other clusterers can extend.
- Abstract() - Constructor for class edu.isi.pegasus.planner.cluster.Abstract
-
The Abstract constructor.
- Abstract - Class in edu.isi.pegasus.planner.cluster.aggregator
-
An abstract implementation of the JobAggregator interface, which the other
implementations can choose to extend.
- Abstract() - Constructor for class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The default constructor.
- Abstract - Class in edu.isi.pegasus.planner.code.generator
-
An Abstract Base class implementing the CodeGenerator interface.
- Abstract() - Constructor for class edu.isi.pegasus.planner.code.generator.Abstract
-
- Abstract - Class in edu.isi.pegasus.planner.code.generator.condor.style
-
An abstract implementation of the CondorStyle interface.
- Abstract() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
The default constructor.
- Abstract - Class in edu.isi.pegasus.planner.namespace.aggregator
-
An abstract implementation of the Profile Aggregators.
- Abstract() - Constructor for class edu.isi.pegasus.planner.namespace.aggregator.Abstract
-
- Abstract - Class in edu.isi.pegasus.planner.selector.site
-
The Abstract Site selector.
- Abstract() - Constructor for class edu.isi.pegasus.planner.selector.site.Abstract
-
- Abstract - Class in edu.isi.pegasus.planner.transfer.implementation
-
An abstract implementation that implements some of the common functions in
the Implementation Interface that are required by all the implementations.
- Abstract(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The overloaded constructor, that is called by the Factory to load the
class.
- AbstractJob - Class in edu.isi.pegasus.planner.dax
-
- AbstractJob() - Constructor for class edu.isi.pegasus.planner.dax.AbstractJob
-
- AbstractJob(AbstractJob) - Constructor for class edu.isi.pegasus.planner.dax.AbstractJob
-
Copy constructor
- AbstractLogFormatter - Class in edu.isi.pegasus.common.logging.format
-
The abstract formatter that implements all of the functions except
the addEvent function
- AbstractLogFormatter() - Constructor for class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
The default constructor.
- AbstractMultipleFTPerXFERJob - Class in edu.isi.pegasus.planner.transfer.implementation
-
An abstract implementation for implementations that can handle multiple
file transfers in a single file transfer job.
- AbstractMultipleFTPerXFERJob(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
The overloaded constructor, that is called by the Factory to load the
class.
- AbstractPerJob - Class in edu.isi.pegasus.planner.selector.site
-
The base class for the site selectors that want to map one job at a time.
- AbstractPerJob() - Constructor for class edu.isi.pegasus.planner.selector.site.AbstractPerJob
-
- AbstractRefiner - Class in edu.isi.pegasus.planner.transfer
-
An abstract implementation that implements some of the common functions
in the Refiner Interface and member variables that are required by all the
refiners.
- AbstractRefiner(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The overloaded constructor.
- AbstractSingleFTPerXFERJob - Class in edu.isi.pegasus.planner.transfer.implementation
-
An abstract implementation for implementations that can handle only a single
file transfer in a single file transfer job.
- AbstractSingleFTPerXFERJob(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob
-
The overloaded constructor, that is called by the Factory to load the
class.
- AbstractSiteCatalogResource - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.classes
-
This class defines a AbstractSiteCatalogResoure type.
- AbstractSiteCatalogResource() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.AbstractSiteCatalogResource
-
- AbstractSiteData - Class in edu.isi.pegasus.planner.catalog.site.classes
-
The abstract data class for Site classes.
- AbstractSiteData() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData
-
- AbstractStrategy - Class in edu.isi.pegasus.planner.refiner.createdir
-
The interface that defines how the cleanup job is invoked and created.
- AbstractStrategy() - Constructor for class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
- accept(File, String) - Method in class edu.isi.pegasus.planner.client.SubmitDirectoryFilenameFilter
-
Tests if a specified file should be included in a file list.
- accept(File, String) - Method in class edu.isi.pegasus.planner.common.RunDirectoryFilenameFilter
-
Tests if a specified file should be included in a file list.
- accept(File, String) - Method in class edu.isi.pegasus.planner.parser.pdax.RunDirectoryFilenameFilter
-
Tests if a specified file should be included in a file list.
- accept(File, String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.KickstartOutputFilenameFilter
-
Tests if a specified file should be included in a file list.
- actionmap - Static variable in class edu.isi.pegasus.common.util.Separator
-
Maps the action associated with a state and a character class.
- actionmap2 - Static variable in class edu.isi.pegasus.common.util.Separator
-
Maps the action associated with a state and char class.
- ACTUAL_FINISH_TIME - Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The constant to be passed to the accessor functions to get or set the
actual end time for a job.
- ACTUAL_START_TIME - Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The constant to be passed to the accessor functions to get or set the
actual start time for a job.
- ADag - Class in edu.isi.pegasus.planner.classes
-
This class object contains the info about a Dag.
- ADag() - Constructor for class edu.isi.pegasus.planner.classes.ADag
-
Initialises the class member variables.
- ADag(DagInfo, Vector) - Constructor for class edu.isi.pegasus.planner.classes.ADag
-
Overloaded constructor.
- ADAG - Class in edu.isi.pegasus.planner.dax
-
- ADAG(String) - Constructor for class edu.isi.pegasus.planner.dax.ADAG
-
The Simple constructor for the DAX object
- ADAG(String, int, int) - Constructor for class edu.isi.pegasus.planner.dax.ADAG
-
DAX Constructor
- Adapter - Class in edu.isi.pegasus.planner.partitioner.graph
-
A Adapter class that converts the ADag
to Graph
and
vice a versa.
- Adapter() - Constructor for class edu.isi.pegasus.planner.partitioner.graph.Adapter
-
- add(String, String) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add a string.
- add(String, int) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add an int.
- add(String, long) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add a long.
- add(String, float) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add a float.
- add(String, double) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add a double.
- add(String, String) - Method in interface edu.isi.pegasus.common.logging.Event
-
Add to the log message.
- add(String) - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Add to the log message with just a value.
- add(String, String) - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Add to the log message for the event on the top.
- add(String, String) - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Add to the log message.
- add(String) - Method in class edu.isi.pegasus.common.logging.format.Simple
-
Add to the log message with just a value.
- add(String, String) - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Add to the log message.
- add(String) - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Add to the log message with just a value.
- add(String, String) - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Add to the log message.
- add(String) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Add to the internal log buffer message a value with the default key.
- add(String, String) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Add to the internal log buffer message a value with the key oassed
The buffer is logged later when the log() method is called.
- add(String, SiteInfo) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
Adds a SiteInfo object to the container.
- add(PoolConfig) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
Adds all the sites in a controlled fashion, to the existing map containing
information about the sites.
- add(PoolConfig, boolean) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
Adds all the sites in a controlled fashion, to the existing map containing
information about the sites.
- add(Job) - Method in class edu.isi.pegasus.planner.classes.ADag
-
This adds a new job to the ADAG object.
- add(Job) - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Adds a job to the aggregated job.
- add(Invoke) - Method in class edu.isi.pegasus.planner.classes.Notifications
-
Adds a Invoke object correpsonding to a notification.
- add(Object, Object) - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
Adds an object to the underlying bag corresponding to a particular key.
- add(Map) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Adds ReplicaCatalogEntries into the store.
- add(String, Collection) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Adds replica catalog entries into the store.
- add(ReplicaLocation) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Adds replica catalog entries into the store.
- add - Variable in class edu.isi.pegasus.planner.client.TCClient
-
- add(Object, Object) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Bag
-
Adds an object to the underlying bag corresponding to a particular key.
- add(Object, Object) - Method in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
-
Adds an object to the underlying bag corresponding to a particular key.
- add(String) - Method in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
-
Adds to the internal XML representation.
- add(String) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.XMLProducer
-
Adds an XML fragment to the internal XML store
- add(Node) - Method in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
-
Add tasks into the occupation diagram.
- add(Object, Object) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag
-
Ignores the key and only adds the value .
- add(boolean) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag
-
Adds a boolean value to the bag
- add(Object, Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
Adds an object to the underlying bag corresponding to a particular key.
- add(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain.TransferChain
-
Adds to the end of the chain.
- addAbstractJob(AbstractJob) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add AbstractJob to the DAX
- addAbstractJobs(List<AbstractJob>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add AbstractJobs to the DAX
- addAlias(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Adds an alias site handle.
- addAll(Notifications) - Method in class edu.isi.pegasus.planner.classes.Notifications
-
Adds all the notifications passed to the underlying container.
- addAll(Invoke.WHEN, Collection<Invoke>) - Method in class edu.isi.pegasus.planner.classes.Notifications
-
Convenience method at add all the notifications corresponding
to a particular event
- addArgument(String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a string argument to the argument List.
- addArgument(File) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a file object to the argument List.
- addArgument(File[]) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a Array of
File
objects to the argument list.
- addArgument(List<File>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a List of
File
objects to the argument list.
- addArgument(File[], String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a Array of
File
objects to the argument list.
- addArgument(List<File>, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a List of
File
objects to the argument list.
- addArgument(String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a argument key and value to the argument List.
- addArgument(String, String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a argument key and value to the argument List.
The argkey and argvalue are seperated by argdelimiter.
Example addArgument("-p","0","=") will result in the argument being added as
-p=0
Multiple calls to addArgument results in the arguments being separated by space.
- addArgument(String, File) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a argument key and File value to the argument List.
The argkey and argvalue are seperated by space.
Example addArgument("-i",new File("f.a")) will result in the argument being added as
-i <file name="f.a">
Multiple calls to addArgument results in the arguments being separated by space.
- addArgument(String, File, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a argument key and File value to the argument List.
The argkey and argvalue are separated by the argdelimiter.
Example addArgument("-i",new File("f.a"),"=") will result in the argument being added as
-i=<file name="f.a">
Multiple calls to addArgument results in the arguments being separated by space.
- addArgument(String, File[]) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a argument key and an array of Files to the argument List.
The argkey and argvalue are separated space.
The files are separated by a space
Example:
File[] files = {new File("f.a1"), new File("f.a2")};
job.addArgument("-i",files)
will result in the argument being added as
-i <file name="f.a1"> <file name="f.a2">
Multiple calls to addArgument results in the arguments being separated by space.
- addArgument(String, List<File>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a argument key and a List of Files to the argument List.
The argkey and argvalue are separated space.
The files are separated by a space
Example:
List files = new LinkedList();
files.add(new File("f.a1"));
files.add(new File("f.a2"));
job.addArgument("-i",files)
will result in the argument being added as
-i <file name="f.a1"> <file name="f.a2">
Multiple calls to addArgument results in the arguments being separated by space.
- addArgument(String, File[], String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a argument key and an array of Files to the argument List.
The argkey and argvalue are separated by the argdelimiter.
The files are separated by a filedelimiter
Example:
File[] files = {new File("f.a1"), new File("f.a2")};
job.addArgument("-i",files,"=",",")
will result in the argument being added as
-i=<file name="f.a1">,<file name="f.a2">
Multiple calls to addArgument results in the arguments being separated by space.
- addArgument(String, List<File>, String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a argument key and a List of Files to the argument List.
The argkey and argvalue are separated by the argdelimiter.
The files are separated by a filedelimter
Example:
List files = new LinkedList();
files.add(new File("f.a1"));
files.add(new File("f.a2"));
job.addArgument("-i",files,"=",",")
will result in the argument being added as
-i=<file name="f.a1">,<file name="f.a2">
Multiple calls to addArgument results in the arguments being separated by space.
- addArgument(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments
-
Adds text to the arguments string
- addArgument(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments
-
Adds filename to the arguments
- addArgument(File) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments
-
Adds a file name to the argument string
- addAttribute(String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Adds an attribute to the set of attributes.
- addAttribute(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Adds attributes to the existing attributes.
- addAttribute(String, String) - Method in class edu.isi.pegasus.planner.invocation.MachineInfo
-
Adds an attribute.
- addAttributes(List, List) - Method in class edu.isi.pegasus.planner.invocation.MachineInfo
-
Add multiple attributes to the machine info element.
- addBulk() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCAdd
-
Adds multiple entries into the TC.
- addChild(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Adds a child to end of the child list.
- addChildResource(AbstractSiteCatalogResource) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.AbstractSiteCatalogResource
-
Add child resources to a site catalog resource
- addChildResource(AbstractSiteCatalogResource) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
-
Add child resources to a site catalog resource
- addChildResource(AbstractSiteCatalogResource) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfo
-
Add child resources to a site catalog resource
- addChildResource(AbstractSiteCatalogResource) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
-
Add child resources to a site catalog resource
- addChildResource(AbstractSiteCatalogResource) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
-
Add child resources to a site catalog resource
- addChildResource(AbstractSiteCatalogResource) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteVOOwnershipInfo
-
Add child resources to a site catalog resource
- addCleanupJobs(Graph) - Method in interface edu.isi.pegasus.planner.refiner.cleanup.CleanupStrategy
-
Adds cleanup jobs to the workflow.
- addCleanupJobs(Graph) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Adds cleanup jobs to the workflow.
- addCleanUpJobs(String, Set, Graph) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Adds cleanup jobs for the workflow scheduled to a particular site
a best first search strategy is implemented based on the depth of the job
in the workflow
- addCleanupJobs(ADag) - Method in class edu.isi.pegasus.planner.refiner.CleanupEngine
-
Adds the cleanup jobs in the workflow that removes the files staged to the
remote site.
- addCleanupNodesForWorkerPackage(ADag) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Adds cleanup nodes in the workflow for sites specified.
- addCleanupPostScript(Job, List) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Adds a /bin/rm post constituentJob to kickstart that removes the files passed.
- addConnection(Connection) - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Adds a connection parameter
- addCreateDirectoryNodes(ADag) - Method in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
It modifies the concrete dag passed in the constructor and adds the create
random directory nodes to it at the root level.
- addCreateDirectoryNodes(ADag) - Method in interface edu.isi.pegasus.planner.refiner.createdir.Strategy
-
Modifies the workflow to add create directory nodes.
- addCreateDirectoryNodes(ADag) - Method in class edu.isi.pegasus.planner.refiner.createdir.Tentacles
-
Modifies the workflow to add create directory nodes.
- addCreateDirectoryNodes(ADag) - Method in class edu.isi.pegasus.planner.refiner.CreateDirectory
-
It modifies the concrete dag passed in the constructor and adds the create
random directory nodes to it at the root level.
- addCredentialType(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Looks at a URL to determine whether a credential should be associated with
a job or not.
- addCredentialType(CredentialHandler.TYPE) - Method in class edu.isi.pegasus.planner.classes.Job
-
Adds a type of credential that will be required by a job.
- addDAG(DAG) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a DAG job to the DAX
- addDAGs(List<DAG>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add multiple DAG jobs to the DAX
- addDAX(DAX) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a DAX job to the DAX
- addDAXs(List<DAX>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add multiple DAX jobs to the DAX
- addDefaultTCEntry(String, String, SysInfo, boolean, String, String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Returns a default TC entry to be used in case entry is not found in the
transformation catalog.
- addDefaultTCEntryForPegasusWebsite(String, String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Returns a default TC entry for the pegasus site.
- addDependantFile(PegasusFile) - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Adds a dependant file.
- addDependency(String, String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a parent child dependency between two jobs,dax,dag
- addDependency(AbstractJob, AbstractJob) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a parent child dependency between two jobs,dax,dag
- addDependency(String, String, String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a parent child dependency with a dependency label
- addDependency(AbstractJob, AbstractJob, String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a parent child dependency with a dependency label
- addDestination(NameValue) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Adds a destination URL for the transfer.
- addDestination(String, String) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Adds a destination URL for the transfer.
- addEdge(String, String) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Adds an edge between two already existing nodes in the graph.
- addEdge(String, String) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Adds an edge between two already existing nodes in the graph.
- addEdges(String, List) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
A convenience method that allows for bulk addition of edges between
already existing nodes in the graph.
- addEdges(String, List) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
A convenience method that allows for bulk addition of edges between
already existing nodes in the graph.
- addEntry(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Adds a site catalog entry to the store.
- addEntry(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Adds an entry into the store.
- addEntry() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCAdd
-
Adds a single entry into the TC.
- addEntry(EnvEntry) - Method in class edu.isi.pegasus.planner.invocation.Environment
-
Adds an environment entry, effectively a key value pair, to the
current environment settings.
- addEntry(String, String) - Method in class edu.isi.pegasus.planner.invocation.Environment
-
Adds an environment entry, effectively a key value pair, to the
current environment settings.
- addEvent(String, String, String) - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Adds the event that is to be associated with the log messages onto an
internal stack
- addEvent(String, String, String) - Method in class edu.isi.pegasus.common.logging.format.Netlogger
-
Adds the event that is to be associated with the log messages onto an
internal stack
- addEvent(String, Map<String, String>) - Method in class edu.isi.pegasus.common.logging.format.Netlogger
-
Adds the event that is to be associated with the log messages onto an
internal stack
- addEvent(String, String, String) - Method in class edu.isi.pegasus.common.logging.format.Simple
-
Adds the event that is to be associated with the log messages onto an
internal stack
- addEvent(String, Map<String, String>) - Method in class edu.isi.pegasus.common.logging.format.Simple
-
Adds the event that is to be associated with the log messages onto an
internal stack
- addEvent(String, String, String) - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Adds the event that is to be associated with the log messages onto an
internal stack
- addEvent(String, Map<String, String>) - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Adds the event that is to be associated with the log messages onto an
internal stack
- addExecutable(Executable) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add Executable to the DAX
- addExecutables(List<Executable>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add Multiple Executable objects to the DAX
- addFile(File) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a RC File object to the top of the DAX.
- addFiles(List<File>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add Files to the RC Section on top of the DAX
- addFileServer(FileServer) - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType
-
Adds a FileServer that can access this directory.
- addGridGateway(GridGateway) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Add a GridGateway to the site.
- addIn(Edge) - Method in class edu.isi.pegasus.planner.provisioner.Node
-
add a data dependency edge to this task
- addInputFile(PegasusFile) - Method in class edu.isi.pegasus.planner.classes.Job
-
Adds an input file to the underlying collection of input files
associated with the job.
- addInterSiteTXNodes(Job, Collection, boolean) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Adds the inter pool transfer nodes that are required for transferring
the output files of the parents to the jobs execution site.
- addInterSiteTXNodes(Job, Collection, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default
-
Adds the inter pool transfer nodes that are required for transferring
the output files of the parents to the jobs execution site.
- addInvoke(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add Notification to the job
- addInvoke(Invoke) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add notification to the job
- addInvoke(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a Notification for this Workflow
- addInvoke(Invoke) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a Notification for this Workflow
- addInvoke(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Add a Notification for this Executable
same as addNotification
- addInvoke(Invoke) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Add a Notification for this Executable
Same as add Notification
- addInvoke(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Add a Notification for this Transformation
- addInvoke(Invoke) - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Add a Notification for this Transformation
- addInvokes(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add Notifications to the job
- addInvokes(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a List of Notifications for this Workflow
- addInvokes(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Add a List of Notifications for this Executable
Same as addNotifications
- addInvokes(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Add a List of Notifications for this Transformation
- addIPFileForTransfer(String) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Adds an input file that is to be transferred from the submit host via
the Condor File Transfer Mechanism.
- addItem(Object, String, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Helper function to assemble various pieces.
- addJob(Job) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Adds jobs to the internal map of jobs that is maintained by the clusterer.
- addJob(Job) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add Job to the DAX
- addJob(Job) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Appends a job to the list of jobs.
- addJob(int, Job) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Inserts a Job into a specific position of the job list.
- addJob(Job) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Add a new job to the workflow being refined.
- addJob(Job) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default
-
Add a new job to the workflow being refined.
- addJobs(List<Job>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add multiple Jobs to the DAX
- addLFNProfile(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Add additional profile to a logical transformation .
- addLFNProfile(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Add additional profile to a logical transformation .
- addLFNProfile(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Add additional profile to a logical transformation .
- addLFNProfile(String, String, String, List) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Add additional profile to a logical transformation .
- addLineToText(StringBuffer, String, String, String, String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCFormatUtility
-
Convenience method to add a line to the internal textual representation.
- addList(String, List) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
- addLogicalTr(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Adds a logical entry to the logicaltx table
- addMachineInfo(MachineInfo) - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
Add a MachineInfo
element.
- addMap(String, Map) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add a Map to the buffer.
- addMeasurement(String, Measurement) - Method in class edu.isi.pegasus.planner.visualize.WorkflowMeasurements
-
Add a Measurement to the store.
- addMetaData(String, String, String) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a Metadata entry for the Catalog object
- addMetaData(MetaData) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a
MetaData
object for the Catalog object
- addMetaData(List<MetaData>) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a List of
MetaData
objects to the Catalog entry object
- addMsg(String) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add an natural language message to the log message.
- addNewJob(Job) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Adds a new job to the dag.
- addNewRelation(String, String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Adds a new PCRelation pair to the Vector of PCRelation
pairs.
- addNewRelation(String, String, boolean) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Adds a new PCRelation pair to the Vector of PCRelation
pairs.
- addNewRelation(PCRelation) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Adds a new PCRelation pair to the Vector of PCRelation
pairs.
- addNewRelation(String, String) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Adds a new PCRelation pair to the Vector of PCRelation
pairs.
- addNewRelation(String, String, boolean) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Adds a new PCRelation pair to the Vector of PCRelation
pairs.
- addNode(GraphNode) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Adds a node to the Graph.
- addNode(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Adds a node to the Graph.
- addNode(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Adds a node to the partition.
- addNotification(Invoke) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Adds a Invoke object correpsonding to a notification.
- addNotification(Invoke) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Adds a Invoke object correpsonding to a notification.
- addNotification(Invoke) - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Adds a Invoke object correpsonding to a notification.
- addNotification(Invoke) - Method in class edu.isi.pegasus.planner.classes.Job
-
Adds a Invoke object correpsonding to a notification.
- addNotification(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add Notification to the job
- addNotification(Invoke) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add notification to the job
- addNotification(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a Notification for this Workflow
- addNotification(Invoke) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a Notification for this Workflow
- addNotification(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Add a Notification for this Executable
same as addInvoke
- addNotification(Invoke) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Add a Notification for this Executable
Same as addInvoke
- addNotifications(Notifications) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Adds all the notifications passed to the underlying container.
- addNotifications(Notifications) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Adds all the notifications passed to the underlying container.
- addNotifications(Notifications) - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Adds all the notifications passed to the underlying container.
- addNotifications(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.classes.Job
-
Adds all the notifications specfied in the TransformationCatalogEntry
to the underlying job notifications.
- addNotifications(Notifications) - Method in class edu.isi.pegasus.planner.classes.Job
-
Adds all the notifications passed to the underlying container.
- addNotifications(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add Notifications to the job
- addNotifications(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a List of Notifications for this Workflow
- addNotifications(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Add a List of Notifications for this Executable.
- addOPFileForTransfer(String) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Adds an output file that is to be transferred from the submit host via
the Condor File Transfer Mechanism.
- addOut(Edge) - Method in class edu.isi.pegasus.planner.provisioner.Node
-
add a data dependency edge from this task
- addOutputFile(PegasusFile) - Method in class edu.isi.pegasus.planner.classes.Job
-
Adds an output file to the underlying collection of output files
associated with the job.
- addPair(String, String, String) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add a key,value pair
The result looks like: key = (pairKey, pairValue)
- addParent(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Adds a parent to end of the parent list.
- addParents(String, List) - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Ends up assigning the parents to a particular node.
- addPFN(PFN) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Adds a PFN specified in the DAX to the object
- addPFN(ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Add a PFN and it's attributes.
- addPFNProfile(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Add additional profile to a physical transformation.
- addPFNProfile(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Add additional profile to a physical transformation.
- addPFNProfile(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Add additional profile to a physical transformation.
- addPFNProfile(String, TCType, String, List) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Add additional profile to a physical transformation.
- addPFNs(List) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Add a PFN and it's attributes.
- addPhysicalFile(String) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a pfn url to the Catalog
- addPhysicalFile(String, String) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a PFN url and a site id to the Catalog
- addPhysicalFile(PFN) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a PFN object to the Catalog
- addPhysicalFiles(List<PFN>) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a list of PFN objects to the Catalog
- addPhysicalTr(String, String, TCType, long) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Adds a physical entry to the physicaltxtable
- addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Adds a profile.
- addProfile(Profiles.NAMESPACES, String, String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Add a profile.
- addProfile(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Add a profile.
- addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Adds a profile.
- addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Adds a profile.
- addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Adds a profile.
- addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Adds a profile.
- addProfile(Profile, long, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Add a lfn or pfn profile to the TC
- addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Allows you to add one profile at a time to the transformation.
- addProfile(Profile) - Method in class edu.isi.pegasus.planner.classes.Job
-
Adds a profile to the job object
- addProfile(String, String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a profile to the job
- addProfile(Profile.NAMESPACE, String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a profile to the job
- addProfile(Profile) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a Profile object
- addProfile(String, String, String) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a profile to the catalog entry
- addProfile(Profile.NAMESPACE, String, String) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a profile to the catalog entry
- addProfile(String, String, String) - Method in class edu.isi.pegasus.planner.dax.PFN
-
- addProfile(Profile.NAMESPACE, String, String) - Method in class edu.isi.pegasus.planner.dax.PFN
-
- addProfileDirectly(Profile) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Adds a profile directly to namespace bypassing any underlying namespace
specific checks.
- addProfileDirectly(Profiles.NAMESPACES, String, String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Add a profile.
- addProfileDirectly(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Add a profile.
- addProfiles(Profiles) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Adds multiple profiles.
- addProfiles(List<Profile>) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Adds multiple profiles.
- addProfiles(Profiles) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Allows you to add one profile at a time to the transformation.
- addProfiles(List) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Allows you to add multiple profiles to the transformation.
- addProfiles(List<Profile>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a list of Profile objects
- addProfiles(List<Profile>) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a List of profile objects to this Catalog entry
- addProfiles(Profile) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a Profile object to this Catalog entry
- addProfiles(List<Profile>) - Method in class edu.isi.pegasus.planner.dax.PFN
-
- addProfiles(Profile) - Method in class edu.isi.pegasus.planner.dax.PFN
-
- addProfilesDirectly(Profiles) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Adds multiple profiles .
- addProfilesDirectly(List<Profile>) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Adds multiple profiles to namespace bypassing any underlying namespace
specific checks.
- addProperties(Properties, Properties) - Static method in class edu.isi.pegasus.common.util.CommonProperties
-
Adds new properties to an existing set of properties while
substituting variables.
- addRecord(String, Space) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsage
-
Add a Space record to the store.
- addRegistrationFiles(Collection) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Adds a Collection of File transfer to the underlying collection of
files to be registered.
- addRelation(String, String) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Adds a new relation to the workflow being refiner.
- addRelation(String, String, String, boolean) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Adds a new relation to the workflow.
- addRelation(String, String, String, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
Adds a new relation to the workflow.
- addRelation(String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default
-
Adds a new relation to the workflow being refiner.
- addRelation(String, String, String, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default
-
Adds a new relation to the workflow.
- addReplicaCatalog(ReplicaCatalog) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Add a Replica Catalog to the site.
- addRoot(GraphNode) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Adds a single root node to the Graph.
- addRoot(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Adds a single root node to the Graph.
- addSetupNodes(ADag) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Adds a setup node per execution site in the workflow that will stage the
worker node executables to the workdirectory on the sites the workflow
has been scheduled to.
- addSetupNodesWithoutUntarNodes(ADag, Set<String>) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Adds only the stage worker nodes to the workflow.
- addSetupNodesWithUntarNodes(ADag, Set<String>) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Adds untar nodes to the workflow, in addition to the stage worker nodes
- addSetXBitJobs(Job, Job, Collection) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Adds the dirmanager to the workflow, that do a chmod on the files
being staged.
- addSetXBitJobs(Job, String, Collection, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Adds the dirmanager job to the workflow, that do a chmod on the files
being staged.
- addSetXBitJobs(Job, String, Collection, int, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Adds the dirmanager job to the workflow, that do a chmod on the files
being staged.
- addSetXBitJobs(Job, String, Collection, int, int) - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Adds the dirmanager job to the workflow, that do a chmod on the files
being staged.
- addSource(NameValue) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Adds a source URL for the transfer.
- addSource(String, String) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Adds a source URL for the transfer.
- addSpaceReading(Space, int) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace
-
Adds a space record for a particular event type.
- addStageInXFERNodes(Job, Collection<FileTransfer>, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
Default behaviour to preserve backward compatibility when the stage in
and symbolic link jobs were not separated.
- addStageInXFERNodes(Job, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
Default behaviour to preserve backward compatibility when the stage in
and symbolic link jobs were not separated.
- addStageInXFERNodes(Job, Collection<FileTransfer>, Collection<FileTransfer>) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Adds the stage in transfer nodes which transfer the input files for a job,
from the location returned from the replica catalog to the job's execution
pool.
- addStageInXFERNodes(Job, Collection<FileTransfer>, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Adds the stage in transfer nodes which transfer the input files for a job,
from the location returned from the replica catalog to the job's execution
pool.
- addStageInXFERNodes(Job, boolean, Collection, int, Map<String, Bundle.PoolTransfer>, Bundle.BundleValue, Implementation) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Adds the stage in transfer nodes which transfer the input files for a job,
from the location returned from the replica catalog to the job's execution
pool.
- addStageInXFERNodes(Job, Collection<FileTransfer>, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Adds the stage in transfer nodes which transfer the input files for a job,
from the location returned from the replica catalog to the job's execution
pool.
- addStageInXFERNodes(Job, boolean, Collection, int, Map<String, Bundle.PoolTransfer>, Bundle.BundleValue, Implementation) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Adds the stage in transfer nodes which transfer the input files for a job,
from the location returned from the replica catalog to the job's execution
pool.
- addStageInXFERNodes(Job, Collection<FileTransfer>, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default
-
Adds the stage in transfer nodes which transfer the input files for a job,
from the location returned from the replica catalog to the job's execution
pool.
- addStageInXFERNodes(Job, Collection<FileTransfer>, String, Implementation) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default
-
Adds the stage in transfer nodes which transfer the input files for a job,
from the location returned from the replica catalog to the job's execution
pool.
- addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Adds the stageout transfer nodes, that stage data to an output site
specified by the user.
- addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean, boolean) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Adds the stageout transfer nodes, that stage data to an output site
specified by the user.
- addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Adds the stageout transfer nodes, that stage data to an output site
specified by the user.
- addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default
-
Adds the stageout transfer nodes, that stage data to an output site
specified by the user.
- addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default
-
Adds the stageout transfer nodes, that stage data to an output site
specified by the user.
- addStatCall(StatCall) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Appends a stat to the list of stats.
- addStatCall(int, StatCall) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Inserts a StatCall into a specific position of the stat list.
- addSubExpression(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.GLite
-
Adds a sub expression to a string buffer
- addSubExpression(StringBuffer, String, Integer) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.GLite
-
Adds a sub expression to a string buffer
- addSysInfo(VDSSysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Adds a system information entry into the TC.
- addTCEntry(String, String, String, String, TCType, String, List, List, SysInfo, Notifications, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Add an single entry into the transformation catalog.
- addTCEntry(String, String, String, String, TCType, String, List, List, SysInfo, Notifications, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Add an single entry into the transformation catalog.
- addTCEntry(String, String, String, String, TCType, String, List, List, SysInfo, Notifications, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Add an single entry into the transformation catalog.
- addTime(String, long) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
- addTimeStamp() - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add a timestamp to the message.
- addToFile(File, OutputStream) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Adds contents to an output stream.
- addToForwardOptions(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Parses the argument in form of option=[value] and adds to the
options that are to be passed ahead to pegasus-run.
- addToNonStandardJavaOptions(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Adds to the Set of non standard JAVA options that need to be passed
to the JVM.
- addToStagingSitesMappings(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Adds to the staging sites
- addToStagingSitesMappings(String, String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Adds to the staging sites
- addTransfer(Collection, int, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
Adds a a collection of FileTransfer
objects to the
appropriate TransferContainer.
- addTransfer(FileTransfer, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
Adds a file transfer to the appropriate TransferContainer.
- addTransfer(FileTransfer) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Adds a file transfer to the underlying collection.
- addTransfer(Collection) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Adds a file transfer to the underlying collection.
- addTransfer(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer
-
Adds a file transfer to the appropriate TransferChain.
- addTransferNodes(ReplicaCatalogBridge, ReplicaCatalog) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Adds the transfer nodes to the workflow.
- addTransformation(Transformation) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add Transformation to the DAX
- addTransformations(List<Transformation>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add Multiple Transformation to the DAX
- addVector(Vector, Vector) - Method in class edu.isi.pegasus.planner.refiner.Engine
-
Adds elements (PegasusFile type) in a Vector to another Vector and
returns the new Vector.
- addWQ(String, String) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add a string.
- after(int, String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.DateUtils
-
- AggregatedJob - Class in edu.isi.pegasus.planner.classes
-
This class holds all the specifics of an aggregated job.
- AggregatedJob() - Constructor for class edu.isi.pegasus.planner.classes.AggregatedJob
-
The default constructor.
- AggregatedJob(int) - Constructor for class edu.isi.pegasus.planner.classes.AggregatedJob
-
The overloaded constructor.
- AggregatedJob(Job, int) - Constructor for class edu.isi.pegasus.planner.classes.AggregatedJob
-
The overloaded constructor.
- aggregatedJobArguments(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Returns the arguments with which the AggregatedJob
needs to be invoked with.
- aggregatedJobArguments(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Returns the arguments with which the AggregatedJob
needs to be invoked with.
- aggregatedJobArguments(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Returns the arguments with which the AggregatedJob
needs to be invoked with.
- Aggregator - Interface in edu.isi.pegasus.planner.namespace.aggregator
-
An internal interface, that allows us to perform aggregation functions
on profiles during merging of profiles.
- aggregator(String) - Method in class edu.isi.pegasus.planner.namespace.Globus
-
Returns the aggregator to be used for the profile key while merging.
- AIX - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
-
- Algorithm - Class in edu.isi.pegasus.planner.selector.site.heft
-
The HEFT based site selector.
- Algorithm(PegasusBag) - Constructor for class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The default constructor.
- All - Class in edu.isi.pegasus.planner.catalog.transformation.mapper
-
This implementation of the mapper generates maps for sites with installed as
well as stageable transformations.
- All(PegasusBag) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.mapper.All
-
The private constructor.
- ALL_POST_SCRIPT_SCOPE - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The postscript mode in which post scripts are added only for all
jobs.
- ALL_REMOTE_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
The constant to denote that all transfers are to be exectuted remotely
- ALL_SITES - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
The constant to apply to all sites.
- ALL_SITES - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
The constant to apply to all sites.
- ALL_TPT_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
The property name to get the sites for which all transfers need to
be TPT.
- ALL_TPT_REMOTE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
The constant to denote that all transfers are to be executed
on the remote site.
- ALL_TPT_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
The property name to get the sites for which all TPT transfers need to
be executed on the remote site.
- ALL_TPT_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
The constant to denote that all transfers are to be third party.
- ALL_TRANSFER_PRIORITY_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
Default properties that applies priorities to all kinds of transfer
jobs.
- ALL_TRANSFERS_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
The property name to get the sites for which all transfers need to
be executed remotely.
- AMD64 - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
-
- ancestors - Variable in class edu.isi.pegasus.planner.provisioner.Node
-
- ancET - Variable in class edu.isi.pegasus.planner.provisioner.Node
-
- app_loc - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- app_loc - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- app_space - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- app_space - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- append(StringBuffer, String, Object, String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Appends a key value mapping to the StringBuffer.
- append(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Appends a key=value pair to the StringBuffer.
- append(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Appends a key=value pair to the StringBuffer.
- append(StringBuffer, String, int) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Appends a key=value pair to the StringBuffer.
- append(StringBuffer, String, String, String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
- appendArrayList(ArrayList, ArrayList) - Method in class edu.isi.pegasus.planner.refiner.Engine
-
It appends the source list at the end of the destination list.
- appendAttribute(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Appends an xml attribute to the xml feed.
- appendAttribute(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default
-
Appends an xml attribute to the xml feed.
- APPENDER - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
- appendProperty(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
Appends a property to the StringBuffer, in the java command line format.
- appendProperty(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript
-
Appends a property to the StringBuffer, in the java command line format.
- appendProperty(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Appends a property to the StringBuffer, in the java command line format.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.ArgEntry
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.ArgString
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Boot
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.CommandLine
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.CPU
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Data
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.EnvEntry
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.File
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in interface edu.isi.pegasus.planner.invocation.HasText
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Ignore
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Stamp
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Uname
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.WorkingDir
-
Appends a piece of text to the existing text.
- apply(Job) - Method in interface edu.isi.pegasus.planner.code.generator.condor.CondorStyle
-
Apply a style to a job.
- apply(AggregatedJob) - Method in interface edu.isi.pegasus.planner.code.generator.condor.CondorStyle
-
Apply a style to an AggregatedJob
- apply(AggregatedJob) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
Apply a style to an AggregatedJob
- apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
Applies the condor style to the job.
- apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
-
Applies the CondorC style to the job.
- apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.CondorG
-
Applies the globus style to the job.
- apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideIN
-
Applies the style to the job to be run in a condor glide in environment.
- apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideinWMS
-
- apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.GLite
-
Applies the gLite style to the job.
- applyCredentialsForLocalExec(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
Examines the credential requirements for a job and adds appropiate
transfer and environment directives for the credentials to be picked
up for the local job
- applyCredentialsForRemoteExec(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
Examines the credential requirements for a job and adds appropiate
transfer and environment directives for the credentials to be staged
and picked up by the job.
- applyJobPriorities(Graph) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Adds job priorities to the jobs in the workflow on the basis of
the levels in the traversal order given by the iterator.
- applyPriority(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Applies priorities to the transfer jobs if a priority is specified
in the properties file.
- applyPriority(TransferJob) - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Applies priorities to the transfer jobs if a priority is specified
in the properties file.
- applyStyle(Job, PrintWriter) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Applies a submit file style to the job, according to the fact whether
the job has to be submitted directly to condor or to a remote jobmanager
via CondorG and GRAM.
- Arch - Class in edu.isi.pegasus.planner.catalog.transformation.classes
-
- Arch(String) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
-
- arch - Variable in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Architecture of the system.
- ARCH - Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
token value for the reserved word "arch".
- ARCH_TYPE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the
architecture type of the remote machines to which the jobmanager talks to.
- Architecture - Class in edu.isi.pegasus.planner.invocation
-
This class is transient for XML parsing.
- Architecture() - Constructor for class edu.isi.pegasus.planner.invocation.Architecture
-
Default c'tor: Construct a hollow shell and allow further
information to be added later.
- ARCHMODE_ATTRIBUTE_KEY - Static variable in class edu.isi.pegasus.planner.invocation.Uname
-
The archmode attribute for the uname
- ARG_DELIMITER - Static variable in class edu.isi.pegasus.planner.dax.AbstractJob
-
- ArgEntry - Class in edu.isi.pegasus.planner.invocation
-
This class carries an argument vector entry for the argument vector.
- ArgEntry() - Constructor for class edu.isi.pegasus.planner.invocation.ArgEntry
-
Default c'tor: Construct a hollow shell and allow further
information to be added later.
- ArgEntry(int) - Constructor for class edu.isi.pegasus.planner.invocation.ArgEntry
-
C'tor: Prepares a given key for accepting a value later on.
- ArgEntry(int, String) - Constructor for class edu.isi.pegasus.planner.invocation.ArgEntry
-
C'tor: Fully initializes the class
- argsmap - Variable in class edu.isi.pegasus.planner.client.TCClient
-
- ArgString - Class in edu.isi.pegasus.planner.invocation
-
This class maintains the application that was run, and the
arguments to the commandline that were actually passed on to
the application.
- ArgString() - Constructor for class edu.isi.pegasus.planner.invocation.ArgString
-
Default c'tor: Construct a hollow shell and allow further
information to be added later.
- ArgString(String) - Constructor for class edu.isi.pegasus.planner.invocation.ArgString
-
Constructs an applications without arguments.
- ArgString(String, String) - Constructor for class edu.isi.pegasus.planner.invocation.ArgString
-
Constructs an applications with arguments.
- Arguments - Class in edu.isi.pegasus.planner.invocation
-
This class maintains the application that was run, and the
arguments to the commandline that were actually passed on to
the application.
- Arguments() - Constructor for class edu.isi.pegasus.planner.invocation.Arguments
-
Default c'tor: Construct a hollow shell and allow further
information to be added later.
- Arguments(String) - Constructor for class edu.isi.pegasus.planner.invocation.Arguments
-
Constructs an applications without arguments.
- ARGUMENTS_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The attribute key for task arguments.
- ARGUMENTS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that denotes the arguments of the job.
- ArgVector - Class in edu.isi.pegasus.planner.invocation
-
This class maintains the application that was run, and the
arguments to the commandline that were actually passed on to
the application.
- ArgVector() - Constructor for class edu.isi.pegasus.planner.invocation.ArgVector
-
Default c'tor: Construct a hollow shell and allow further
information to be added later.
- ArgVector(String) - Constructor for class edu.isi.pegasus.planner.invocation.ArgVector
-
Constructs an applications without arguments.
- assignDefaultJobPriorities() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether we assign job priorities or not
to the jobs
Referred to by the "pegasus.job.priority.assign" property.
- assimilate(PegasusProperties, Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Assimilate the profiles in the namespace in a controlled manner.
- assimilate(PegasusProperties, Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Assimilate the profiles in the namespace in a controlled manner.
- assimilateJobs() - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Puts the jobs in the abstract workflow into the job that is index
by the logical name of the jobs.
- associate(String, String) - Static method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Associates a VDS property with the new pegasus property.
- associate(Partition, Job) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Maps the partition to the corresponding clustered job.
- associate(POSTScript) - Static method in class edu.isi.pegasus.planner.code.GridStartFactory
-
Associates a shortname with the classname.
- associate(String, String) - Static method in class edu.isi.pegasus.planner.code.GridStartFactory
-
Associates a shortname with the classname.
- associateCredentials(Job, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Associates credentials with the job corresponding to the files that
are being transferred.
- attributeNotSupported(String, String, String) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
This is called when an attribute is encountered for an element that is valid
in the schema context but not supported right now.
- attributes(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Slurps all attributes from related to a mapping into a map.
- AuthenticateRequest - Class in edu.isi.pegasus.planner.classes
-
The object that describes the authenticate request.
- AuthenticateRequest() - Constructor for class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
Default Constructor.
- AuthenticateRequest(char, String, String) - Constructor for class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
Overloaded Constructor.
- authenticationSet() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the authenticate option for the planner.
- AVERAGE_BANDWIDTH - Static variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The average bandwidth between the sites.
- AVERAGE_DATA_SIZE_BETWEEN_JOBS - Static variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The average data that is transferred in between 2 jobs in the workflow.
- avg_bandwidth - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- Avg_Bandwidth - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- avg_bandwidth_range1 - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- Avg_Bandwidth_range1 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- avg_bandwidth_range2 - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- Avg_Bandwidth_range2 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- avg_bandwidth_range3 - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- Avg_Bandwidth_range3 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- avg_bandwidth_range4 - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- Avg_Bandwidth_range4 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- AVG_BW - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- AVG_BW_RANGE1 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- AVG_BW_RANGE2 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- AVG_BW_RANGE3 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- AVG_BW_RANGE4 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- AVG_COMPUTE_TIME - Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The constant to be passed to the accessor functions to get or set the
average compute time for the node.
- c_action - Static variable in class edu.isi.pegasus.common.util.ProfileParser
-
There are six identified actions.
- c_action - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Contains the actions to perform upon each state transition including
transition into self state.
- c_cdone - Static variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
-
- c_count - Static variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
-
- c_error - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
This message is sent whenever one of the member function is executed
which relies on an established database context.
- c_expression - Static variable in class edu.isi.pegasus.common.util.Currently
-
Store the regular expressions necessary to parse ISO timestamps.
- c_final - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Provides the final states and associated messages.
- c_instance - Static variable in class edu.isi.pegasus.common.util.Version
-
Instance variable keeping track of the Singleton.
- c_logger - Static variable in class edu.isi.pegasus.planner.invocation.SimpleServer
-
- c_logger - Static variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
-
- c_pattern - Static variable in class edu.isi.pegasus.common.util.Currently
-
Stores compiled patterns at first use, quasi-Singleton.
- c_prefix - Static variable in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Prefix for the property subset to use with this catalog.
- c_prefix - Static variable in interface edu.isi.pegasus.planner.catalog.SiteCatalog
-
Prefix for the property subset to use with this catalog.
- c_prefix - Static variable in interface edu.isi.pegasus.planner.catalog.WorkCatalog
-
Prefix for the property subset to use with this catalog.
- c_prefix - Static variable in class edu.isi.pegasus.planner.ranking.GetDAX
-
Prefix for the property subset to use with this catalog.
- c_state - Static variable in class edu.isi.pegasus.common.util.ProfileParser
-
Table to contain the state transition diagram for the parser.
- c_state - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Contains the state transition tables.
- c_terminate - Static variable in class edu.isi.pegasus.planner.invocation.SimpleServer
-
- CACHE_FILE_SUFFIX - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Suffix to be applied for cache file generation.
- CACHE_FILE_SUFFIX - Static variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
Suffix to be applied for cache file generation.
- CACHE_READ_ONLY_KEY - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The name of the key that disables writing back to the cache file.
- CACHE_REPLICA_CATALOG_IMPLEMENTER - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The name of the Replica Catalog Implementer that serves as the source for
cache files.
- CACHE_REPLICA_CATALOG_KEY - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The name of the source key for Replica Catalog Implementer that serves as
cache
- cAction - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser
-
There are five identified actions.
- calculateAverageComputeTime(Job) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Returns the average compute time in seconds for a job.
- calculateEstimatedStartAndFinishTime(GraphNode, String) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Estimates the start and finish time of a job on a site.
- calculateSlotSize() - Method in class edu.isi.pegasus.planner.provisioner.Estimator
-
- calendar - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
- Callback - Interface in edu.isi.pegasus.planner.parser.dax
-
This interfaces defines the callback calls from DAX parsing.
- Callback - Interface in edu.isi.pegasus.planner.parser.pdax
-
This interfaces defines the callback calls from PDAX parsing.
- Callback - Interface in edu.isi.pegasus.planner.partitioner
-
This interface defines the callback calls from the partitioners.
- Callback - Interface in edu.isi.pegasus.planner.visualize
-
This callback interface has methods to handle the data sections
for stdout, stderr and stdin.
- canSetXBit() - Method in interface edu.isi.pegasus.planner.code.GridStart
-
Indicates whether the enabling mechanism can set the X bit
on the executable on the remote grid site, in addition to launching
it on the remote grid stie
- canSetXBit() - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Indicates whether the enabling mechanism can set the X bit
on the executable on the remote grid site, in addition to launching
it on the remote grid site.
- canSetXBit() - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Indicates whether the enabling mechanism can set the X bit
on the executable on the remote grid site, in addition to launching
it on the remote grid stie
- canSetXBit() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Indicates whether the enabling mechanism can set the X bit
on the executable on the remote grid site, in addition to launching
it on the remote grid stie
- cascadeDeletionUpwards(Graph, List<GraphNode>) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
Cascade the deletion of the jobs upwards in the workflow.
- Catalog - Interface in edu.isi.pegasus.planner.catalog
-
This interface create a common ancestor for all cataloging
interfaces.
- CATALOG_URL - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- CatalogEntry - Interface in edu.isi.pegasus.planner.catalog.classes
-
This interface create a common ancestor for all catalog entries.
- CatalogException - Exception in edu.isi.pegasus.planner.catalog
-
Class to notify of failures.
- CatalogException() - Constructor for exception edu.isi.pegasus.planner.catalog.CatalogException
-
- CatalogException(String) - Constructor for exception edu.isi.pegasus.planner.catalog.CatalogException
-
Constructs a CatalogException
with the
specified detailed message.
- CatalogException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.CatalogException
-
Constructs a CatalogException
with the
specified detailed message and a cause.
- CatalogException(Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.CatalogException
-
Constructs a CatalogException
with the
specified just a cause.
- CatalogType - Class in edu.isi.pegasus.planner.dax
-
Abstract Type for RC and TC Sections of the DAX.
- CatalogType() - Constructor for class edu.isi.pegasus.planner.dax.CatalogType
-
- CatalogType(CatalogType) - Constructor for class edu.isi.pegasus.planner.dax.CatalogType
-
Copy Constructor
- CATEGORY_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the key that determines the category to which the job
belongs to.
- categoryRelatedKey(String) - Static method in class edu.isi.pegasus.planner.namespace.Dagman
-
Determines whether a key is category related or not.
- cb_document(Map) - Method in class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler
-
Callback when the opening tag was parsed.
- cb_document(Map) - Method in class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler
-
Callback when the opening tag was parsed.
- cb_done() - Method in class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler
-
- cb_done() - Method in class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler
-
Callback when the parsing of the document is done.
- cb_filename(Filename) - Method in class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler
-
- cb_filename(Filename) - Method in class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler
-
Callback for the filename from section 1 filenames.
- cb_job(Job) - Method in class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler
-
- cb_job(Job) - Method in class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler
-
Callback for the job from section 2 jobs.
- cb_parents(String, List) - Method in class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler
-
- cb_parents(String, List) - Method in class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler
-
Callback for child and parent relationships from section 3.
- cbCompoundTransformation(CompoundTransformation) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Callback when a compound transformation is encountered in the DAX from
Section 3: that lists Transformations that Aggregate executables and Files
- cbCompoundTransformation(CompoundTransformation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Callback when a compound transformation is encountered in the DAX
- cbCompoundTransformation(CompoundTransformation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
Callback when a compound transformation is encountered in the DAX
- cbCompoundTransformation(CompoundTransformation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Callback when a compound transformation is encountered in the DAX
- cbCompoundTransformation(CompoundTransformation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Callback when a compound transformation is encountered in the DAX
- cbCompoundTransformation(CompoundTransformation) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Callback when a compound transformation is encountered in the DAX
- cbDocument(Map) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Callback when the opening tag was parsed.
- cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Callback when the opening tag was parsed.
- cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
Callback when the opening tag was parsed.
- cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Callback when the opening tag was parsed.
- cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Callback when the opening tag was parsed.
- cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Callback when the opening tag was parsed.
- cbDocument(Map) - Method in interface edu.isi.pegasus.planner.parser.pdax.Callback
-
Callback when the opening tag was parsed.
- cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Callback when the opening tag was parsed.
- cbDone() - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Callback when the parsing of the document is done.
- cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Callback when the parsing of the document is done.
- cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
Callback to signal that traversal of the DAX is complete.
- cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph
-
Callback to signal that traversal of the DAX is complete.
- cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Callback when the parsing of the document is done.
- cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Callback to signal that traversal of the DAX is complete.
- cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Callback when the parsing of the document is done.
- cbDone() - Method in interface edu.isi.pegasus.planner.parser.pdax.Callback
-
Callback when the parsing of the document is done.
- cbDone() - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Callback when the parsing of the document is done.
- cbDone() - Method in interface edu.isi.pegasus.planner.partitioner.Callback
-
Callback for the partitioner to signal that it is done with the processing.
- cbDone() - Method in class edu.isi.pegasus.planner.partitioner.ClustererCallback
-
Callback for the partitioner to signal that it is done with the processing.
- cbDone() - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
Callback for the partitioner to signal that it is done with the processing.
- cbExecutable(TransformationCatalogEntry) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Callback when a transformation catalog entry is encountered in the DAX
from Section 2: Executables that list entries in a Transformaton Catalog
- cbExecutable(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Callback when a transformation catalog entry is encountered in the DAX
- cbExecutable(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
Callback when a transformation catalog entry is encountered in the DAX
- cbExecutable(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Callback when a transformation catalog entry is encountered in the DAX
- cbExecutable(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Callback when a transformation catalog entry is encountered in the DAX
- cbExecutable(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Callback when a transformation catalog entry is encountered in the DAX
- cbFile(ReplicaLocation) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Callback when a replica catalog entry is encountered in the DAX from
Section 1: Files that lists entries in a Replica Catalog
- cbFile(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Callback when a replica catalog entry is encountered in the DAX
- cbFile(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
Callback when a replica catalog entry is encountered in the DAX
- cbFile(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Callback when a replica catalog entry is encountered in the DAX
- cbFile(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Callback when a replica catalog entry is encountered in the DAX
- cbFile(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Callback when a replica catalog entry is encountered in the DAX
- cbInputFile(String, StatInfo) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
Callback function for when stat information for an input file is
encountered.
- cbInputFile(String, StatInfo) - Method in interface edu.isi.pegasus.planner.visualize.Callback
-
Callback function for when stat information for an input file is
encountered
- cbInputFile(String, StatInfo) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
Callback function for when stat information for an input file is
encountered.
- cbInputFile(String, StatInfo) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
Callback function for when stat information for an input file is
encountered.
- cbInvocationEnd() - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
Callback signalling that an invocation record has been parsed.
- cbInvocationEnd() - Method in interface edu.isi.pegasus.planner.visualize.Callback
-
Callback signalling that an invocation record has been parsed.
- cbInvocationEnd() - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
Callback signalling that an invocation record has been parsed.
- cbInvocationEnd() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
Callback signalling that an invocation record has been parsed.
- cbInvocationStart(String, String) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
Callback for the starting of an invocation record.
- cbInvocationStart(String, String) - Method in interface edu.isi.pegasus.planner.visualize.Callback
-
Callback for the starting of an invocation record.
- cbInvocationStart(String, String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
- cbInvocationStart(String, String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
Callback for the starting of an invocation record.
- cbInvocationStart(String, String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd
-
Callback for the starting of an invocation record.
- cbJob(Job) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Callback for the job from section 4: Job's, DAX's or Dag's that list
a JOB or DAX or DAG .
- cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Callback for the job from section 2 jobs.
- cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
This constructs a graph node for the job and ends up storing it in the
internal map.
- cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph
-
This constructs a graph node for the job and ends up storing it in the
internal map.
- cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Callback for the job from section 2 jobs.
- cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
This constructs a graph node for the job and ends up storing it in the
internal map.
- cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Callback for the job from section 2 jobs.
- cbMachine(Machine) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
Callback to pass the machine information on which the job is
executed.
- cbMachine(Machine) - Method in interface edu.isi.pegasus.planner.visualize.Callback
-
Callback to pass the machine information on which the job is executed.
- cbMachine(Machine) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
Callback to pass the machine information on which the job is executed.
- cbMachine(Machine) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
Callback to pass the machine information on which the job is executed.
- cbMetadata(Map) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
Callback for the metadata retrieved from the kickstart record.
- cbMetadata(Map) - Method in interface edu.isi.pegasus.planner.visualize.Callback
-
Callback for the metadata retrieved from the kickstart record.
- cbMetadata(Map) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
Callback for the metadata retrieved from the kickstart record.
- cbMetadata(Map) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
Callback for the metadata retrieved from the kickstart record.
- cbOutputFile(String, StatInfo) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
Callback function for when stat information for an output file is
encountered.
- cbOutputFile(String, StatInfo) - Method in interface edu.isi.pegasus.planner.visualize.Callback
-
Callback function for when stat information for an output file is
encountered
- cbOutputFile(String, StatInfo) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
Callback function for when stat information for an output file is
encountered.
- cbOutputFile(String, StatInfo) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
Callback function for when stat information for an output file is
encountered.
- cbParents(String, List<PCRelation>) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Callback for child and parent relationships from Section 5: Dependencies
that lists Parent Child relationships (can be empty)
- cbParents(String, List<PCRelation>) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Callback for child and parentID relationships from section 3.
- cbParents(String, List) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
This updates the internal graph nodes of child with references to it's
parents referred to by the list of parents passed.
- cbParents(String, List) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Callback for child and parent relationships from section 3.
- cbParents(String, List) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
This updates the internal graph nodes of child with references to it's
parents referred to by the list of parents passed.
- cbParents(String, List) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Callback for child and parent relationships from section 3.
- cbParents(String, List) - Method in interface edu.isi.pegasus.planner.parser.pdax.Callback
-
Callback for child and parent relationships from section 3.
- cbParents(String, List) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Callback for child and parent relationships from section 3.
- cbParents(String, List) - Method in interface edu.isi.pegasus.planner.partitioner.Callback
-
Callback for when a partitioner determines the relations between partitions
that it has previously constructed.
- cbParents(String, List) - Method in class edu.isi.pegasus.planner.partitioner.ClustererCallback
-
Callback for when a partitioner determines the relations between partitions
that it has previously constructed.
- cbParents(String, List) - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
Callback for when a partitioner determines the relations between partitions
that it has previously constructed.
- cbPartition(Partition) - Method in interface edu.isi.pegasus.planner.parser.pdax.Callback
-
Callback for the partition .
- cbPartition(Partition) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Callback for the partition .
- cbPartition(Partition) - Method in interface edu.isi.pegasus.planner.partitioner.Callback
-
Callback for when a partitioner determines that partition has been
constructed.
- cbPartition(Partition) - Method in class edu.isi.pegasus.planner.partitioner.ClustererCallback
-
Callback for when a partitioner determines that partition has been
constructed.
- cbPartition(Partition) - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
Callback for when a partitioner determines that partition has been
constructed.
- cbStdERR(List, String) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
- cbStdERR(List, String) - Method in interface edu.isi.pegasus.planner.visualize.Callback
-
Callback function for the data section of stderr.
- cbStdERR(List, String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
- cbStdERR(List, String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
- cbStdIN(List, String) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
- cbStdIN(List, String) - Method in interface edu.isi.pegasus.planner.visualize.Callback
-
Callback function for the data section of stdin.
- cbStdIN(List, String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
- cbStdIN(List, String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
- cbStdOut(List, String) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
- cbStdOut(List, String) - Method in interface edu.isi.pegasus.planner.visualize.Callback
-
Callback function for the data section of stdout.
- cbStdOut(List, String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
- cbStdOut(List, String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
- cbWfInvoke(Invoke) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Callback when a invoke is encountered in the DAX from the top level inside
adag tag.
- cbWfInvoke(Invoke) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Callback when a invoke entry is encountered in the top level inside the adag element in DAX.
- cbWfInvoke(Invoke) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
Callback when a invoke entry is encountered in the top level inside the adag element in the DAX.
- cbWfInvoke(Invoke) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Callback when a invoke entry is encountered in the top level inside the adag element in the DAX.
- cbWfInvoke(Invoke) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Callback when a invoke entry is encountered in the top level inside the adag element in the DAX.
- cbWfInvoke(Invoke) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Callback when a invoke entry is encountered in the top level inside the adag element in the DAX.
- Chain - Class in edu.isi.pegasus.planner.transfer.refiner
-
This transfer refiner builds upon the Default Refiner.
- Chain(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Chain
-
The overloaded constructor.
- Chain.SiteTransfer - Class in edu.isi.pegasus.planner.transfer.refiner
-
A container to manage the transfer jobs that are needed to be done on a
single site.
- Chain.SiteTransfer() - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer
-
The default constructor.
- Chain.SiteTransfer(String, int) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer
-
Convenience constructor.
- Chain.TransferChain - Class in edu.isi.pegasus.planner.transfer.refiner
-
A shallow container class, that contains the list of the names of the
transfer jobs and can return the last job in the list.
- Chain.TransferChain() - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Chain.TransferChain
-
The default constructor.
- CHAIN_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the number of chains of stagein
nodes that are to be created per site.
- CHANGE_DIR_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key that triggers the kickstart to change directory
before launching an executable instead of launching the executable from
the directory where kickstart is being run.
- CHANGE_XBIT_TRANSFORMATION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The logical name of the transformation that creates directories on the
remote execution pools.
- characters(char[], int, int) - Method in class edu.isi.pegasus.planner.client.DAXValidator
-
- characters(char[], int, int) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
This method is the callback function for characters in an element.
- characters(char[], int, int) - Method in class edu.isi.pegasus.planner.parser.Parser
-
This is used to store the character data that is in xml.
- CHECK_DB_EXISTS_STMT - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
MySQL statement for checking if DB exists
- checkAndSetProperty(PegasusProperties, String, String) - Method in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
Checks for a property, if it does not exist then sets the property to
the value passed
- checkAndTransferIrodsEnvFile(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Deprecated.
- checkAndTransferProxy(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Deprecated.
- checkAndTransferProxy(TransferJob) - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Determines if there is a need to transfer proxy for the transfer
job or not.
- checkCompatibility(Implementation) - Method in class edu.isi.pegasus.planner.transfer.MultipleFTPerXFERJobRefiner
-
Checks whether the implementation loaded is compatible with the refiner.
- checkFile(String) - Method in class edu.isi.pegasus.planner.invocation.SimpleServer
-
Reads the contents of the specified file, and returns with the
remote exit code contained in the job chain.
- checkID(String) - Static method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Copy Constructor
- checkIfDatabaseExists(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Checks if the given database exists
- checkIn() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
check whether all parent tasks are finished.
- checkIntegrity() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
check all child task's start time is scheduled after the finishtime of this task
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Additional method to handle the Condor namespace with
convenience mappings.
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
This checks whether the key passed by the user is valid in the current
namespace or not.
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.ENV
-
This checks whether the key passed by the user is valid in the current
namespace or not.
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Globus
-
Additional method to handle the globus namespace with
convenience mappings.
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Hints
-
This checks whether the key passed by the user is valid in the current
namespace or not.
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
This checks the whether a key value pair specified is valid in the current
namespace or not, and whether it clashes with other key value pairs that
might have been set by Pegasus internally.
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
This checks whether the key passed by the user is valid in the current
namespace or not.
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Selector
-
This checks whether the key passed by the user is valid in the current
namespace or not.
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Stat
-
This checks whether the key passed by the user is valid in the current
namespace or not.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
It puts in the namespace specific information specified in the properties
file into the namespace.
- checkKeyInNS(String, String) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
This checks the whether a key value pair specified is valid in the current
namespace or not by calling the checkKey function and then on the basis of
the values returned puts them into the associated map in the class.
- checkKeyInNS(String, String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
This checks the whether a key value pair specified is valid in the current
namespace or not by calling the checkKey function and then on the basis of
the values returned puts them into the associated map in the class.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
It puts in the namespace specific information specified in the properties
file into the namespace.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.ENV
-
It puts in the namespace specific information specified in the properties
file into the namespace.
- checkKeyInNS(String) - Method in class edu.isi.pegasus.planner.namespace.ENV
-
It takes in key=value pairs separated by a ; and puts them into the
namespace after checking if they are valid or not.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Globus
-
It puts in the namespace specific information specified in the properties
file into the namespace.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Hints
-
It puts in the namespace specific information specified in the properties
file into the namespace.
- checkKeyInNS(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
It puts in the namespaces keys from another namespace instance.
- checkKeyInNS(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
It puts in the namespace specific information from the Transformation
Catalog into the namespace.
- checkKeyInNS(Profile) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
It takes in a Profiles object and puts them into the namespace after
checking if the namespace in the Profile object is same as the namepsace
implementation.
- checkKeyInNS(List) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
It takes in a list of profiles and puts them into the namespace after
checking if they are valid or not.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
It puts in the namespace specific information specified in the properties
file into the namespace.
- checkKeyInNS(String, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
This checks the whether a key value pair specified is valid in the current
namespace or not by calling the checkKey function and then on the basis of
the values returned puts them into the associated map in the class.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
It puts in the namespace specific information specified in the properties
file into the namespace.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Selector
-
It puts in the namespace specific information specified in the properties
file into the namespace.
- checkKeyInNS(String) - Method in class edu.isi.pegasus.planner.namespace.Selector
-
It takes in key=value pairs separated by a ; and puts them into the
namespace after checking if they are valid or not.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Stat
-
It puts in the namespace specific information specified in the properties
file into the namespace.
- checkKeyInNS(String) - Method in class edu.isi.pegasus.planner.namespace.Stat
-
It takes in key=value pairs separated by a ; and puts them into the
namespace after checking if they are valid or not.
- checkLfnPfnMap(long, long) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Checks if a lfn,pfn exist in the map.
- checkProfile(String, String, String, long, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Checks if a given profile exists
- child - Variable in class edu.isi.pegasus.planner.classes.PCRelation
-
the child making up the
parent child relationship pair
in a dag
- CHILD_JOB_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The atrribute key for child job id.
- CHILD_TASK_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The atrribute key for child task id.
- childrenRepresentation() - Method in class edu.isi.pegasus.planner.partitioner.Topological
-
Returns a map that is index by GraphNode ID's and each value is the list
of ID's of children of that GraphNode.
- CHMOD_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a chmod job that sets the xbit on the remote end.
- ClassADSGenerator - Class in edu.isi.pegasus.planner.code.generator.condor
-
A helper class, that generates Pegasus specific classads for the jobs.
- ClassADSGenerator() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
- classname - Variable in class edu.isi.pegasus.planner.client.TCClient
-
- CLASSNAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The basename of the class that is implmenting this.
- CLASSNAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
The basename of the class that is implmenting this.
- CLASSNAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The basename of the class that is implmenting this.
- Cleanup - Class in edu.isi.pegasus.planner.refiner.cleanup
-
Use's RM to do removal of the files on the remote sites.
- Cleanup() - Constructor for class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The default constructor.
- CLEANUP_DAG_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The prefix that is attached to the name of the dag for which the
cleanup Dag is being generated, to generate the name of the cleanup
Dag.
- CLEANUP_DIR - Static variable in class edu.isi.pegasus.planner.client.CPlanner
-
The basename of the directory that contains the submit files for the
cleanup DAG that for the concrete dag generated for the workflow.
- CLEANUP_DIR - Static variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The basename of the directory that contains the submit files for the
cleanup DAG that for the concrete dag generated for the workflow.
- CLEANUP_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a cleanup job, that removes the files that from the remote
working directories of the remote sites.
- CLEANUP_JOB_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The prefix for CLEANUP_JOB ID i.e prefix+the parent compute_job ID becomes
ID of the cleanup job.
- CLEANUP_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Constant suffix for the names of the deployment nodes.
- CleanupEngine - Class in edu.isi.pegasus.planner.refiner
-
The refiner that results in the creation of cleanup jobs within the workflow.
- CleanupEngine(PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.CleanupEngine
-
The overloaded constructor.
- CleanupFactory - Class in edu.isi.pegasus.planner.refiner.cleanup
-
A factory class to load the appropriate type of Code Generator.
- CleanupFactory() - Constructor for class edu.isi.pegasus.planner.refiner.cleanup.CleanupFactory
-
- CleanupFactoryException - Exception in edu.isi.pegasus.planner.refiner.cleanup
-
Class to notify of failures while instantiating Cleanup Strategy and Implementation
classes.
- CleanupFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.refiner.cleanup.CleanupFactoryException
-
Constructs a CleanupFactoryException
with no detail
message.
- CleanupFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.refiner.cleanup.CleanupFactoryException
-
Constructs a CleanupFactoryException
with the specified detailed
message.
- CleanupFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.refiner.cleanup.CleanupFactoryException
-
Constructs a CleanupFactoryException
with the
specified detailed message and a cause.
- CleanupFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.refiner.cleanup.CleanupFactoryException
-
Constructs a CleanupFactoryException
with the
specified detailed message and a cause.
- CleanupImplementation - Interface in edu.isi.pegasus.planner.refiner.cleanup
-
The interface that defines how the cleanup job is invoked and created.
- cleanupJob(String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
Returns boolean indicating whether the job is a cleanup job or not.
- cleanupJob(String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
Returns boolean indicating whether the job is a cleanup job or not.
- CleanupStrategy - Interface in edu.isi.pegasus.planner.refiner.cleanup
-
The interface that defines how the cleanup job is invoked and created.
- clear() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Removes everything.
- clear() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Removes everything from the catalogs.
- clear() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Removes everything.
- clear() - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Removes everything.
- clear() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Clears all the entries in the store.
- clear() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Deletes the entire transformation catalog.
- clear() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Deletes the entire transformation catalog.
- clear() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Deletes the entire transformation catalog.
- clear() - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Deletes the entire transformation catalog.
- clear() - Method in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
-
Clears the internal state.
- clear() - Method in interface edu.isi.pegasus.planner.provenance.pasoa.XMLProducer
-
Clears the internal state.
- clearAliases() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Clears the aliases associates with the replica catalog.
- clearJobs() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Removes all the jobs from the workflow, and all the edges between
the workflows.
- Client - Class in edu.isi.pegasus.planner.catalog.transformation.client
-
- Client() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.Client
-
- clone() - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Return a copy of this Sysinfo object
- clone() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
creates a new instance of this object and returns
you it.
- clone() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns a new copy of the Object.
- clone() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns a new copy of the Object.
- clone() - Method in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
Returns a clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns a new copy of the Object.
- clone() - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Returns a new copy of the Object.
- clone() - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Returns a new copy of the Object.
- clone() - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Returns a clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns a new copy of the Object.
- clone() - Method in class edu.isi.pegasus.planner.classes.NameValue
-
Returns a copy of this object
- clone() - Method in class edu.isi.pegasus.planner.classes.Notifications
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
returns a new copy of the
Object
- clone() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns a copy of the existing data object.
- clone() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns a new copy of the Object.
- clone() - Method in class edu.isi.pegasus.planner.classes.Profile
-
Returns a copy of the object.
- clone() - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.classes.TransferJob
-
Returns a new copy of the Object.
- clone() - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.dax.File
-
Return a clone of this File
- clone() - Method in class edu.isi.pegasus.planner.dax.Invoke
-
Create a copy of this Invoke object
- clone() - Method in class edu.isi.pegasus.planner.dax.MetaData
-
Create a copy of this Metdata Object
- clone() - Method in class edu.isi.pegasus.planner.dax.Parent
-
- clone() - Method in class edu.isi.pegasus.planner.dax.Profile
-
Create a copy of this Profile
- clone() - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Returns a copy of the current namespace object.
- clone() - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Returns a copy of the current namespace object.
- clone() - Method in class edu.isi.pegasus.planner.namespace.ENV
-
Returns a copy of the current namespace object.
- clone() - Method in class edu.isi.pegasus.planner.namespace.Globus
-
Returns a copy of the current namespace object
- clone() - Method in class edu.isi.pegasus.planner.namespace.Hints
-
Returns a copy of the current namespace object.
- clone() - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Returns a copy of the current namespace object
- clone() - Method in class edu.isi.pegasus.planner.namespace.Selector
-
Returns a copy of the current namespace object.
- clone() - Method in class edu.isi.pegasus.planner.namespace.Stat
-
Returns a copy of the current namespace object.
- clone() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns a copy of the object.
- clone() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Returns a copy of the object.
- clone() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Returns a copy of the object
- clone() - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
-
Returns a copy of this object.
- clone() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
Returns the clone of the object.
- cloneSet(Set) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Clones a Set.
- close() - Method in class edu.isi.pegasus.common.util.StreamGobbler
-
Closes the underneath input and output stream that were opened.
- close() - Method in class edu.isi.pegasus.common.util.XMLWriter
-
- close() - Method in interface edu.isi.pegasus.planner.catalog.Catalog
-
Explicitely free resources before the garbage collection hits.
- close() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Explicitely free resources before the garbage collection hits.
- close() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Explicitely free resources before the garbage collection hits.
- close() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
This operation will dump the in-memory representation back onto
disk.
- close() - Method in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
-
Close the connection to back end file.
- close() - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
Closes the connection.
- close() - Method in class edu.isi.pegasus.planner.catalog.site.impl.VORS
-
- close() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
Close the connection to backend file.
- close() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML3
-
Close the connection to backend file.
- close() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
- close() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
- close() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Closes the connection to the back end.
- close() - Method in class edu.isi.pegasus.planner.catalog.work.Database
-
Explicitely free resources before the garbage collection hits.
- close() - Method in class edu.isi.pegasus.planner.client.RCClient
-
Frees resources taken by the instance of the replica catalog.
- close() - Method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
Close the write handle to the file that is written.
- close() - Method in class edu.isi.pegasus.planner.partitioner.PDAXWriter
-
Close the xml file that is written.
- close() - Method in class edu.isi.pegasus.planner.ranking.GetDAX
-
Explicitely free resources before the garbage collection hits.
- CLOSE_COMMENT_TAG - Static variable in class edu.isi.pegasus.common.util.XMLWriter
-
- CLOSE_ELEMENT_TAG - Static variable in class edu.isi.pegasus.common.util.XMLWriter
-
- CLOSE_EMPTY_ELEMENT_TAG - Static variable in class edu.isi.pegasus.common.util.XMLWriter
-
- CloseBrace - Class in edu.isi.pegasus.planner.parser.tokens
-
Class to convey a closed brace, no token value necessary.
- CloseBrace() - Constructor for class edu.isi.pegasus.planner.parser.tokens.CloseBrace
-
- closeConnection() - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
To close the connection to replica services.
- closeElement() - Method in class edu.isi.pegasus.common.util.XMLWriter
-
Close open elements start tag.
- CloseParanthesis - Class in edu.isi.pegasus.planner.parser.tokens
-
Class to convey a closed paranthesis, no token value necessary.
- CloseParanthesis() - Constructor for class edu.isi.pegasus.planner.parser.tokens.CloseParanthesis
-
Default Constructor
- cluster - Variable in class edu.isi.pegasus.planner.provisioner.Node
-
- cluster(ADag) - Method in class edu.isi.pegasus.planner.refiner.NodeCollapser
-
Clusters the jobs in the workflow.
- cluster(ADag, String) - Method in class edu.isi.pegasus.planner.refiner.NodeCollapser
-
Clusters the jobs in the workflow.
- Cluster - Class in edu.isi.pegasus.planner.transfer.refiner
-
A cluster refiner that builds upon the Bundle Refiner.
- Cluster(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
The overloaded constructor.
- CLUSTER_LOCAL_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the cluster parameter for the
local stagein transfer node.
- CLUSTER_LOCAL_STAGE_OUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the cluster parameter for the
local stagein transfer node.
- CLUSTER_REMOTE_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the clustering parameter for the
stagein transfer node.
- CLUSTER_REMOTE_STAGE_OUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the bundling parameter for the
remote stagein transfer node.
- CLUSTER_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the clustering parameter for the
stagein transfer node.
- CLUSTER_STAGE_OUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the clustering parameter for the
stageout transfer node.
- CLUSTERED_JOB_PREFIX - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The prefix that is assigned to the jobname of the collapsed jobs to
get the jobname for the fat job.
- clusteredJob(Partition) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Returns the job corresponding to a partition.
- clusteredJob(String) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Returns the job corresponding to a partition.
- Clusterer - Interface in edu.isi.pegasus.planner.cluster
-
The clustering API, that constructs clusters of jobs out of a single
partition.
- ClustererCallback - Class in edu.isi.pegasus.planner.partitioner
-
A Callback implementation that passes the partitions detected during the
partitioning of the worflow to a Clusterer for clustering.
- ClustererCallback() - Constructor for class edu.isi.pegasus.planner.partitioner.ClustererCallback
-
The default constructor.
- ClustererException - Exception in edu.isi.pegasus.planner.cluster
-
The baseclass of the exception that is thrown by all Clusterers.
- ClustererException() - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererException
-
Constructs a ClustererException
with no detail
message.
- ClustererException(String) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererException
-
Constructs a ClustererException
with the specified detailed
message.
- ClustererException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererException
-
Constructs a ClustererException
with the specified detailed
message and a cause.
- ClustererException(Throwable) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererException
-
Constructs a ClustererException
with the
specified just a cause.
- ClustererFactory - Class in edu.isi.pegasus.planner.cluster
-
A factory class to load the appropriate Partitioner, and Clusterer Callback
for clustering.
- ClustererFactory() - Constructor for class edu.isi.pegasus.planner.cluster.ClustererFactory
-
- ClustererFactoryException - Exception in edu.isi.pegasus.planner.cluster
-
Class to notify of failures while instantiating Clusterer implementations.
- ClustererFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererFactoryException
-
Constructs a ClustererFactoryException
with no detail
message.
- ClustererFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererFactoryException
-
Constructs a ClustererFactoryException
with the specified detailed
message.
- ClustererFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererFactoryException
-
Constructs a ClustererFactoryException
with the
specified detailed message and a cause.
- ClustererFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererFactoryException
-
Constructs a ClustererFactoryException
with the
specified detailed message and a cause.
- clustererTable() - Static method in class edu.isi.pegasus.planner.cluster.ClustererFactory
-
Returns a table that maps, the clustering technique to an appropriate
class implementing that clustering technique.
- clusteringOf(String, List) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
-
- clusteringOf(String, List) - Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty
-
clusteringOf
- CODE_GENERATOR_CLASS - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The SubmitWriter that has to be loaded for now.
- CodeGenerator - Interface in edu.isi.pegasus.planner.code
-
The interface that allows us to plug in various code generators for writing
out the concrete plan.
- CodeGeneratorException - Exception in edu.isi.pegasus.planner.code
-
The baseclass of the exception that is thrown by all Code Generators.
- CodeGeneratorException() - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorException
-
Constructs a CodeGeneratorException
with no detail
message.
- CodeGeneratorException(String) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorException
-
Constructs a CodeGeneratorException
with the specified detailed
message.
- CodeGeneratorException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorException
-
Constructs a CodeGeneratorException
with the specified detailed
message and a cause.
- CodeGeneratorException(Throwable) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorException
-
Constructs a CodeGeneratorException
with the
specified just a cause.
- CodeGeneratorFactory - Class in edu.isi.pegasus.planner.code
-
A factory class to load the appropriate type of Code Generator.
- CodeGeneratorFactory() - Constructor for class edu.isi.pegasus.planner.code.CodeGeneratorFactory
-
- CodeGeneratorFactoryException - Exception in edu.isi.pegasus.planner.code
-
Class to notify of failures while instantiating Code Generator implementations.
- CodeGeneratorFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorFactoryException
-
Constructs a CodeGeneratorFactoryException
with no detail
message.
- CodeGeneratorFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorFactoryException
-
Constructs a CodeGeneratorFactoryException
with the specified detailed
message.
- CodeGeneratorFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorFactoryException
-
Constructs a CodeGeneratorFactoryException
with the
specified detailed message and a cause.
- CodeGeneratorFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorFactoryException
-
Constructs a CodeGeneratorFactoryException
with the
specified detailed message and a cause.
- COLLAPSE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that if set in the Pegasus namespace determines the
number of jobs that are collapsed into the super job.
- COLLAPSE_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
The logical name of the transformation that is able to run multiple
jobs via mpi.
- COLLAPSE_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
The logical name of the transformation that is able to run multiple
jobs sequentially.
- collapseJobs(String, List, String) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Collapses the jobs having the same logical name according to the sites
where they are scheduled.
- COLLAPSER_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the collapser executable to be used
to run the merged/collapsed job.
- COLLECTOR_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
-
The key that designates the collector associated with the job
- COLLECTOR_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The key that designates the collector associated with the job.
- columnLength(String[], int[]) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
Computes the maximum column lenght for pretty printing.
- columnLength(String[], int[]) - Static method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Computes the maximum column lenght for pretty printing.
- combine(Profiles) - Static method in class edu.isi.pegasus.common.util.ProfileParser
-
Creates a profile string from the internal representation.
- combine(List) - Static method in class edu.isi.pegasus.common.util.ProfileParser
-
Creates a profile string from the internal representation.
- combine(String, String, String) - Static method in class edu.isi.pegasus.common.util.Separator
-
Combines the three components that constitute a fully-qualified
definition identifier into a single string.
- combine(String, String, String, String) - Static method in class edu.isi.pegasus.common.util.Separator
-
Combines the four components that reference a fully-qualified
definition identifier into a single string.
- combine(String, String, String) - Static method in class edu.isi.pegasus.planner.classes.Job
-
Combines the three components together into a single string as
namespace-name-version.
- CommandLine - Class in edu.isi.pegasus.planner.invocation
-
This class maintains the application that was run, and the
arguments to the commandline that were actually passed on to
the application.
- CommandLine() - Constructor for class edu.isi.pegasus.planner.invocation.CommandLine
-
Default c'tor: Construct a hollow shell and allow further
information to be added later.
- CommandLine(String) - Constructor for class edu.isi.pegasus.planner.invocation.CommandLine
-
Constructs an applications without arguments.
- CommandLine(String, String) - Constructor for class edu.isi.pegasus.planner.invocation.CommandLine
-
Constructs an applications with arguments.
- commandLineOpts - Variable in class edu.isi.pegasus.planner.client.Executable
-
The command line options passed to the executable
- CommonProperties - Class in edu.isi.pegasus.common.util
-
This class creates a common interface to handle package properties.
- CommonProperties(String) - Constructor for class edu.isi.pegasus.common.util.CommonProperties
-
ctor.
- compare(Object, Object) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery.LFNComparator
-
Compares this object with the specified object for order.
- compare(Object, Object) - Method in class edu.isi.pegasus.planner.cluster.Horizontal.JobComparator
-
Compares this object with the specified object for order.
- compare(Object, Object) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal.GraphNodeComparator
-
Compares this object with the specified object for order.
- compare(Node, Node) - Method in class edu.isi.pegasus.planner.provisioner.OccupationDiagram.NodeComp
-
- compare(Object, Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.HeftGraphNodeComparator
-
- compare(Object, Object) - Method in class edu.isi.pegasus.planner.visualize.MeasurementComparator
-
- compare(Object, Object) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceComparator
-
- compareTo(Object) - Method in class edu.isi.pegasus.planner.classes.NameValue
-
- compareTo(Object) - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
- compareTo(Object) - Method in class edu.isi.pegasus.planner.ranking.Ranking
-
- compareTo(Object) - Method in class edu.isi.pegasus.planner.selector.replica.Regex.Rank
-
Compares the Rank object with another rank object.
- complain(String, String, String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Small helper method to bundle repetitive complaints in a template
for reporting progress.
- complain(String, String, String) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogParser
-
- complain(String, String, String) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
This is called when an attribute is encountered for an element that is invalid
from the schema context and is not supported.
- complete - Variable in class edu.isi.pegasus.planner.provisioner.Edge
-
- COMPLETE_TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The complete TC name for kickstart.
- COMPLETE_TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The complete TC name for kickstart.
- COMPLETE_TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The complete TC name for dirmanager.
- COMPLETE_TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The complete TC name for pegasus worker package.
- COMPLETE_UNTAR_TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The complete TC name for untar.
- CompoundTransformation - Class in edu.isi.pegasus.planner.classes
-
A data class to contain compound transformations.
- CompoundTransformation(String) - Constructor for class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Constructor
- CompoundTransformation(String, String, String) - Constructor for class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Overloaded Constructor
- compTime - Variable in class edu.isi.pegasus.planner.provisioner.Edge
-
- compute(String, String, String) - Method in interface edu.isi.pegasus.planner.namespace.aggregator.Aggregator
-
Do the aggregation function on the profile values.
- compute(String, String, String) - Method in class edu.isi.pegasus.planner.namespace.aggregator.MAX
-
Returns the maximum of two values.
- compute(String, String, String) - Method in class edu.isi.pegasus.planner.namespace.aggregator.MIN
-
Returns the minimum of two values.
- compute(String, String, String) - Method in class edu.isi.pegasus.planner.namespace.aggregator.Sum
-
Sums up the values.
- compute(String, String, String) - Method in class edu.isi.pegasus.planner.namespace.aggregator.Update
-
Returns the minimum of two values.
- COMPUTE_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a compute job.
- computeDownwardRank(GraphNode) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Computes the downward rank of a node.
- computeRuntime() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the runtime associated with the job.
- concreteDagEmpty(String, ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
A callout method that dictates what needs to be done in case the concrete
plan that is generated is empty.
- CONDOR - Static variable in class edu.isi.pegasus.planner.classes.Profile
-
- Condor - Class in edu.isi.pegasus.planner.code.generator.condor.style
-
Enables a job to be directly submitted to the condor pool of which the
submit host is a part of.
- Condor() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
The default constructor.
- Condor - Class in edu.isi.pegasus.planner.namespace
-
This helper class helps in handling the arguments specified in the
Condor namespace by the user either through dax or through profiles in pool.
- Condor() - Constructor for class edu.isi.pegasus.planner.namespace.Condor
-
The default constructor.
- Condor(Map) - Constructor for class edu.isi.pegasus.planner.namespace.Condor
-
The overloaded constructor
- Condor - Class in edu.isi.pegasus.planner.transfer.sls
-
This uses the Condor File Transfer mechanism for the second level staging.
- Condor() - Constructor for class edu.isi.pegasus.planner.transfer.sls.Condor
-
The default constructor.
- CONDOR_CODE_GENERATOR_CLASS - Static variable in class edu.isi.pegasus.planner.code.CodeGeneratorFactory
-
The name of the class implementing the condor code generator.
- CONDOR_CONFIGURATION_VALUE - Static variable in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
The value for the condor configuration.
- CONDOR_DAGMAN_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The logical name with which to query the transformation catalog for the
condor_dagman executable, that ends up running the mini dag as one
job.
- CONDOR_DAGMAN_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The logical name with which to query the transformation catalog for the
condor_dagman executable, that ends up running the mini dag as one
job.
- CONDOR_DAGMAN_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The logical name with which to query the transformation catalog for the
condor_dagman executable, that ends up running the mini dag as one
job.
- CONDOR_DAGMAN_NAMESPACE - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The namespace to use for condor dagman.
- CONDOR_DAGMAN_NAMESPACE - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The namespace to use for condor dagman.
- CONDOR_DAGMAN_NAMESPACE - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The namespace to use for condor dagman.
- CONDOR_KICKSTART - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- CONDOR_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The style indicating that the submit files are to be generated for
a vanilla condor execution.
- CONDOR_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The name of the class implementing the Condor Style.
- CONDOR_VERSION_COMMAND - Static variable in class edu.isi.pegasus.common.util.CondorVersion
-
The condor version command to be executed.
- CondorC - Class in edu.isi.pegasus.planner.code.generator.condor.style
-
Enables a job to be directly submitted to the condor pool of which the
submit host is a part of.
- CondorC() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
-
The default constructor.
- CONDORC_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The style indicating that the submit files are to be generated for
a CondorC submission to remote schedds.
- CONDORC_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The name of the class implementing the CondorC Style.
- CondorG - Class in edu.isi.pegasus.planner.code.generator.condor.style
-
This implementation enables a job to be submitted via CondorG to remote
grid sites.
- CondorG() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.CondorG
-
The default Constructor.
- CondorGenerator - Class in edu.isi.pegasus.planner.code.generator.condor
-
This class generates the condor submit files for the DAG which has to
be submitted to the Condor DagMan.
- CondorGenerator() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default constructor.
- CondorGlideIN - Class in edu.isi.pegasus.planner.code.generator.condor.style
-
Enables a job to be submitted to nodes that are logically part of the local pool,
but physically are not.
- CondorGlideIN() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideIN
-
The default constructor.
- CondorGlideinWMS - Class in edu.isi.pegasus.planner.code.generator.condor.style
-
Jobs targeting glidinWMS pools.
- CondorGlideinWMS() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideinWMS
-
The default constructor.
- CondorQuoteParser - Class in edu.isi.pegasus.planner.code.generator.condor
-
A utility class to correctly quote arguments strings before handing over
to Condor.
- CondorQuoteParser() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser
-
- CondorQuoteParserException - Exception in edu.isi.pegasus.planner.code.generator.condor
-
This class is used to signal errors while parsing argument strings for
Condor Quoting.
- CondorQuoteParserException(String, int) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParserException
-
The overloaded constructor
- CondorQuoteParserException(String, int, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParserException
-
The overloaded constructor
- CondorStyle - Interface in edu.isi.pegasus.planner.code.generator.condor
-
An interface to allow us to apply different execution styles to a job
via Condor DAGMAN.
- CondorStyleException - Exception in edu.isi.pegasus.planner.code.generator.condor
-
A specific exception for the Condor Style generators.
- CondorStyleException() - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleException
-
Constructs a CondorStyleException
with no detail
message.
- CondorStyleException(String) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleException
-
Constructs a CondorStyleException
with the specified detailed
message.
- CondorStyleException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleException
-
Constructs a CondorStyleException
with the specified detailed
message and a cause.
- CondorStyleException(Throwable) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleException
-
Constructs a CondorStyleException
with the
specified just a cause.
- CondorStyleFactory - Class in edu.isi.pegasus.planner.code.generator.condor
-
A factory class to load the appropriate type of Condor Style impelementations.
- CondorStyleFactory() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The default constructor.
- CondorStyleFactoryException - Exception in edu.isi.pegasus.planner.code.generator.condor
-
Class to notify of failures while instantiating Condor Style implementations.
- CondorStyleFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactoryException
-
Constructs a CondorStyleFactoryException
with no detail
message.
- CondorStyleFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactoryException
-
Constructs a CondorStyleFactoryException
with the specified detailed
message.
- CondorStyleFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactoryException
-
Constructs a CondorStyleFactoryException
with the
specified detailed message and a cause.
- CondorStyleFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactoryException
-
Constructs a CondorStyleFactoryException
with the
specified detailed message and a cause.
- condorUniverse - Variable in class edu.isi.pegasus.planner.classes.Job
-
The universe in which the job has to be executed.
- condorVariables - Variable in class edu.isi.pegasus.planner.classes.Job
-
For Condor Namespace.
- CondorVersion - Class in edu.isi.pegasus.common.util
-
A utility class that allows us to determine condor version.
- CondorVersion(LogManager) - Constructor for class edu.isi.pegasus.common.util.CondorVersion
-
The default constructor.
- CondorVersion.CondorVersionCallback - Class in edu.isi.pegasus.common.util
-
An inner class, that implements the StreamGobblerCallback to determine
the version of Condor being used.
- CondorVersion.CondorVersionCallback() - Constructor for class edu.isi.pegasus.common.util.CondorVersion.CondorVersionCallback
-
The Default Constructor
- CONFIG_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
The level value, to indicate a CONFIG message.
- CONFIG_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default
-
The type value to indicate a CONFIG message.
- CONFIGURED_TEMPLATES_Q - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- ConfigXmlParser - Class in edu.isi.pegasus.planner.parser
-
This is the parsing class, used to parse the pool config file in xml format.
- ConfigXmlParser(PegasusProperties) - Constructor for class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
Default Class Constructor.
- ConfigXmlParser(String, PegasusProperties) - Constructor for class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
Class Constructor intializes the parser and turns on validation.
- connect(Properties) - Method in interface edu.isi.pegasus.planner.catalog.Catalog
-
Establishes a link between the implementation and the thing the
implementation is build upon.
- connect(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Connects to the database.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Establishes a connection to the database from the properties.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Establishes a link between the implementation and the thing the
implementation is build upon.
- connect(String, Properties) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Connects to an individual replica catalog.
- connect(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Reads the on-disk map file into memory.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Establishes a connection to the database from the properties.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
-
Establishes a connection to the file from the properties.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
Issues the condor status command, and stores the results retrieved back
into a List.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.site.impl.VORS
-
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
Establishes a connection to the file from the properties.
- connect(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
Initializes the Site Catalog Parser instance for the file.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML3
-
Establishes a connection to the file from the properties.
- connect(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML3
-
Initializes the Site Catalog Parser instance for the file.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Empty for the time being.
- connect(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.work.Database
-
Connects to the database.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.work.Database
-
Establishes a connection to the database from the properties.
- connect(PegasusProperties) - Method in class edu.isi.pegasus.planner.client.RCClient
-
Connects the interface with the replica catalog implementation.
- connect(PegasusProperties) - Method in class edu.isi.pegasus.planner.ranking.GetDAX
-
A convenience method to connect on the basis of PegasusProperties.
- connect(Properties) - Method in class edu.isi.pegasus.planner.ranking.GetDAX
-
Establishes a connection to the database from the properties.
- Connection - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This data class describes a connection property for replica catalog.
- Connection() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
The default constructor.
- Connection(String, String) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
The overloaded constructor.
- connectMds() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
Create and return a MDS LdapContext.
- CONSOLE_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
The level value, to indicate a CONSOLE error message.
- CONSOLE_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default
-
The type value to indicate a CONSOLE message.
- constituentJobsIterator() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns an iterator to the constituent jobs of the AggregatedJob.
- construct(Job, String, String) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Constructs a condor variable in the condor profile namespace
associated with the job.
- construct(Job, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Constructs a condor variable in the condor profile namespace
associated with the constituentJob.
- construct(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
Constructs the postscript that has to be invoked on the submit host
after the job has executed on the remote end.
- construct(Job, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Constructs a condor variable in the condor profile namespace
associated with the job.
- construct(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript
-
Constructs the postscript that has to be invoked on the submit host
after the job has executed on the remote end.
- construct(Job, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Constructs a condor variable in the condor profile namespace
associated with the job.
- construct(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
-
Constructs the postscript that has to be invoked on the submit host
after the job has executed on the remote end.
- construct(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript
-
Constructs the postscript that has to be invoked on the submit host
after the job has executed on the remote end.
- construct(Job, String) - Method in interface edu.isi.pegasus.planner.code.POSTScript
-
Constructs the postscript that has to be invoked on the submit host
after the job has executed on the remote end.
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Constructs a new element of the format (key=value).
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Constructs a new element of the format (key=value).
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.ENV
-
Constructs a new element of the format (key=value).
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Globus
-
Constructs a new element of the format (key=value).
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Hints
-
Constructs a new element of the format (key=value).
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Constructs a new element of the format (key=value).
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Constructs a new element of the format (key=value).
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Selector
-
Constructs a new element of the format (key=value).
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Stat
-
Constructs a new element of the format (key=value).
- construct(Job, String, String) - Method in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
Constructs a condor variable in the condor profile namespace
associated with the job.
- construct(Job, String, String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Constructs a condor variable in the condor profile namespace
associated with the job.
- constructAbstractAggregatedJob(List, String, String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Constructs a new aggregated job that contains all the jobs passed to it.
- constructAbstractAggregatedJob(List, String, String, String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Constructs an abstract aggregated job that has a handle to the appropriate
JobAggregator that will be used to aggregate the jobs.
- constructAbstractAggregatedJob(List, String, String) - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator
-
Constructs an abstract aggregated job that has a handle to the appropriate
JobAggregator that will be used to aggregate the jobs.
- constructCleanupJob(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Constructs a kickstart setup constituentJob
- constructClusteredJobID(Partition) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Returns the ID for the clustered job corresponding to a partition.
- constructClusteredJobID(Partition) - Method in class edu.isi.pegasus.planner.cluster.Vertical
-
Returns the ID for the clustered job corresponding to a partition.
- constructCondorKey(Job, String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Constructs a condor variable in the condor profile namespace
associated with the job.
- constructDAGJob(String, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Constructs a job that plans and submits the partitioned workflow,
referred to by a Partition.
- constructDAGJob(Job, File, File, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Constructs a job that plans and submits the partitioned workflow,
referred to by a Partition.
- constructDAGJob(Partition, File, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Constructs a job that plans and submits the partitioned workflow,
referred to by a Partition.
- constructDAGManKnobs(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Constructs Any extra arguments that need to be passed to dagman, as determined
from the properties file.
- constructDAGManKnobs(PegasusProperties) - Static method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Constructs Any extra arguments that need to be passed to dagman, as determined
from the properties file.
- constructDefaultURLToPegasusWorkerPackage(String, SysInfo) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Constructs the default URL's for the pegasus worker package.
- constructEntry(String, float, long) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus
-
Returns an entry that needs to be plotted in the graph.
- constructEntry(String, float, float, float) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus
-
Returns an entry that needs to be plotted in the graph.
- constructFileKey(String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default
-
Constructs the key for an entry to the file table.
- constructFileTX(PegasusFile, String, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Constructs the FileTransfer object on the basis of the transiency
information.
- constructGridResource(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
-
Constructs the grid_resource entry for the job.
- constructID(String, int) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Given an integer id, returns a string id that is used for the clustered
job.
- constructJobID(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Returns the id for a job
- constructLevelRelations(Callback, int, int) - Method in class edu.isi.pegasus.planner.partitioner.BFS
-
Calls out to the callback with appropriate relations between the partitions
constructed for the levels.
- constructLevelRelations(Callback, int, int) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Calls out to the callback with appropriate relations between the partitions
constructed for the levels.
- constructMap(String) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Constructs a map with the numbers/values for the collapsing factors to
collapse the nodes of same type.
- constructMap(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Constructs a map with the numbers/values to be passed in the RSL handle
for certain pools.
- constructNewDagInfo(DagInfo, Vector) - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
Constructs a DagInfo object for the
decomposed Dag on the basis of the jobs
which are deleted from the DAG by the
reduction algorithm
Note : We are plainly copying the
inputFiles and the outputFiles.
- constructNewSubInfos(Vector, Vector) - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
constructs the Vector of subInfo objects
corresponding to the reduced ADAG.
- constructPartition() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
It while looking at the node list constructs the relations between
the jobs in the partition, that can be gotten through
getRelationsInPartition().
- constructPartitionName(String, boolean) - Static method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
It constructs the partition name given the daxName.
- constructPartitions(Callback, List, int) - Method in class edu.isi.pegasus.planner.partitioner.BFS
-
Given a list of jobs, constructs (one or more) partitions out of it.
- constructPartitions(Callback, List, int) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Given a list of jobs, constructs (one or more) partitions out of it.
- constructPartitions(Callback, List, int, String) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Given a list of jobs, constructs (one or more) partitions out of it.
- constructPegasusPlanPrescript(Job, PlannerOptions, String, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Constructs the pegasus plan prescript for the subdax
- constructPREJob(Job, String, String, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Constructs the prejob that fetches sls file, and then invokes transfer
again.
- constructSetupJob(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Constructs a kickstart setup constituentJob
- constructSiteCatalog(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.CreateSampleSiteCatalog
-
Generates a sample site catalog.
- constructSiteToSRMServerMap(PegasusProperties) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Constructs a Properties objects by parsing the relevant SRM
pegasus properties.
- constructTCEntryFromEnvironment() - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns a tranformation catalog entry object constructed from the environment
An entry is constructed if either of the following environment variables
are defined
1) CONDOR_HOME
2) CONDOR_LOCATION
CONDOR_HOME takes precedence over CONDOR_LOCATION
- constructTCEntryFromEnvironment() - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Returns a tranformation catalog entry object constructed from the environment
An entry is constructed if either of the following environment variables
are defined
1) CONDOR_HOME
2) CONDOR_LOCATION
CONDOR_HOME takes precedence over CONDOR_LOCATION
- constructTCEntryFromEnvironment() - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns a tranformation catalog entry object constructed from the environment
An entry is constructed if either of the following environment variables
are defined
1) CONDOR_HOME
2) CONDOR_LOCATION
CONDOR_HOME takes precedence over CONDOR_LOCATION
- constructTCEntryFromEnvProfiles(ENV) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns a tranformation catalog entry object constructed from the environment
An entry is constructed if either of the following environment variables
are defined
1) CONDOR_HOME
2) CONDOR_LOCATION
CONDOR_HOME takes precedence over CONDOR_LOCATION
- constructTCEntryFromEnvProfiles(ENV) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Returns a tranformation catalog entry object constructed from the environment
An entry is constructed if either of the following environment variables
are defined
1) CONDOR_HOME
2) CONDOR_LOCATION
CONDOR_HOME takes precedence over CONDOR_LOCATION
- constructTCEntryFromEnvProfiles(ENV) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns a tranformation catalog entry object constructed from the environment
An entry is constructed if either of the following environment variables
are defined
1) CONDOR_HOME
2) CONDOR_LOCATION
CONDOR_HOME takes precedence over CONDOR_LOCATION
- constructTCEntryFromJobHints(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Constructs a TC entry object from the contents of a job.
- constructTCEntryFromPath() - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Returns a tranformation catalog entry object constructed from the path
environment variable
- constructTransformationCatalogEntryForDAGMan(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Constructs TransformationCatalogEntry for DAGMan.
- constructURL(String, String, String) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Constructs a URL with the prefix as the poolname enclosed in #.
- contains(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Returns boolean indicating whether the store has a SiteCatalogEntry
matching a handle.
- contains(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
Returns a boolean indicating if an entry for a Site with a particular id
exists or not.
- containsAbstractJob(AbstractJob) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Check if an abstractjob exists in the DAX
- containsAbstractJobId(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Check if a jobid exists in the DAX
- containsDAG(DAG) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Check if a DAG job exists in the DAX
- containsDAGId(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Check if a DAG job id exists in the DAX
- containsDAX(DAX) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Check if a DAX job exists in the DAX
- containsDAXId(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Check if a DAX job id exists in the DAX
- containsExecutable(Executable) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Checks if a given executable exists in the DAX based Transformation Catalog
- containsJob(Job) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Check if a job exists in the DAX
- containsJobId(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Check if a jobid exists in the DAX
- containsKey(Object) - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
Returns true if the namespace contains a mapping for the specified key.
- containsKey(Object) - Method in class edu.isi.pegasus.planner.namespace.Hints
-
Returns true if the namespace contains a mapping for the specified key.
- containsKey(Object) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Returns true if the namespace contains a mapping for the specified key.
- containsKey(Object) - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Returns true if the namespace contains a mapping
for the specified key.
- containsKey(Object) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Bag
-
Returns true if the namespace contains a mapping for the specified key.
- containsKey(Object) - Method in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
-
Returns true if the namespace contains a mapping for the specified key.
- containsKey(Object) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag
-
Returns false.
- containsKey(Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
Returns true if the namespace contains a mapping for the specified key.
- containsKey(String) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
Returns whether there is an entry for a particular site or not.
- containsKey(String) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Returns whether there is an entry for a particular site or not.
- containsLFN(String) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns a boolean indicating whether the store has a mapping for a
particular LFN or not.
- containsTransformation(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Returns a boolean indicating whether the store contains an entry
corresponding to a particular transformation or not.
- containsTransformation(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Returns a boolean indicating whether the store contains an entry
corresponding to a particular transformation or not.
- containsTransformation(Transformation) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Checks if a given Transformation exists in the DAX based Transformation Catalog
- convert(SiteInfo) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.SiteInfo2SiteCatalogEntry
-
An adapter method that converts the SiteInfo
object to
SiteCatalogEntry
object.
- convert(SiteInfo, LogManager) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.SiteInfo2SiteCatalogEntry
-
An adapter method that converts the SiteInfo
object to
SiteCatalogEntry
object.
- convert(String, String) - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Convert a VDS Properties file to Pegasus properties.
- convert(Map) - Method in class edu.isi.pegasus.planner.namespace.Globus
-
Converts a map with RSL kv-pairs into an RSL string.
- convert(ADag) - Static method in class edu.isi.pegasus.planner.partitioner.graph.Adapter
-
Converts the ADag
to Graph
instance.
- convertException(String, Exception) - Static method in class edu.isi.pegasus.common.util.DynamicLoader
-
Converts an exception from the class loader into an error message.
- convertException(Exception) - Method in class edu.isi.pegasus.common.util.DynamicLoader
-
Converts an exception from the class loader into an error message.
- convertException() - Method in exception edu.isi.pegasus.common.util.FactoryException
-
Converts most of the common instantiation exceptions from the class
loader into an error message.
- convertException(int) - Method in exception edu.isi.pegasus.common.util.FactoryException
-
Converts most of the common instantiation exceptions from the class
loader into an error message.
- convertException(String, Throwable, int) - Static method in exception edu.isi.pegasus.common.util.FactoryException
-
Converts most of the common instantiation exceptions from the class
loader into an error message.
- convertException(Exception, int) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.Client
-
Returns an error message that chains all the lower order error messages
that might have been thrown.
- convertException(Exception) - Static method in class edu.isi.pegasus.planner.client.Executable
-
Returns an error message that chains all the lower order error messages
that might have been thrown.
- convertException(Exception, int) - Static method in class edu.isi.pegasus.planner.client.Executable
-
Returns an error message that chains all the lower order error messages
that might have been thrown.
- convertExceptionToString(String, Throwable) - Static method in class edu.isi.pegasus.common.util.DynamicLoader
-
Converts an exception from the class loader into an error message.
- convertExecutableToTCE(Executable) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Converts the executable into transformation catalog entries
- convertFromSecondsTo(long, String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus
-
Converts from seconds to one of the units specified.
- convertFromSecondsTo(long, String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus
-
Converts from seconds to one of the units specified.
- convertTC() - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Converts transformation catalog from one format to another
- convertTCEntryFrom(List<String>, String) - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Parses the input files in the input format and returns the output as a TransformationStore instance
- convertTCEntryTo(TransformationStore, String, String) - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Converts Transformation store to the given output format.
- convertToList(Vector) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Converts a Vector to a List.
- convertToList(Set) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Converts a Set to a List.
- convertToSiteInfo(SiteCatalogGenerator.Site) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
An adapter method that converts the Site object to the SiteInfo object
corresponding to the site catalog schema version 2.
- convertToTransferInputFormat(Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Convers the collection of files into an input format suitable for the
transfer executable
- CORES_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The key for the number of cores for the multiplier factor in stampede.
- CORES_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The number of cores that are associated with the job.
- cost - Variable in class edu.isi.pegasus.planner.provisioner.Edge
-
- count - Variable in class edu.isi.pegasus.planner.classes.DagInfo
-
Refers to the number of the Abstract Dags which are being sent to the
Concrete Planner in response to the user's request.
- counter - Variable in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
The counter to track the number of invocation records.
- CPlanner - Class in edu.isi.pegasus.planner.client
-
This is the main program for the Pegasus.
- CPlanner() - Constructor for class edu.isi.pegasus.planner.client.CPlanner
-
Default constructor.
- CPlanner(LogManager) - Constructor for class edu.isi.pegasus.planner.client.CPlanner
-
The overload constructor.
- CPLANNER_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The logical name with which to query the transformation catalog for
cPlanner executable.
- CPLANNER_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The logical name with which to query the transformation catalog for
cPlanner executable.
- CPU - Class in edu.isi.pegasus.planner.invocation
-
The CPU element.
- CPU() - Constructor for class edu.isi.pegasus.planner.invocation.CPU
-
The default constructor
- CPU(String) - Constructor for class edu.isi.pegasus.planner.invocation.CPU
-
Constructs a piece of data.
- create() - Static method in class edu.isi.pegasus.planner.catalog.site.classes.LocalSiteCatalogEntry
-
Creates a default site catalog entry for site local with the VO
set to pegasus.
- create(String, String) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.LocalSiteCatalogEntry
-
Creates a default site catalog entry for site local with the VO
set to pegasus.
- CREATE_AND_CHANGE_DIR_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key that triggers the kickstart to create and
then the working directory to it before launching an executable.
- CREATE_DATABASE_STMT - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
MySQL statement for checking for creating database
- CREATE_DIR_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a job that creates directories at the remote pools.
- CREATE_DIR_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
Constant prefix for the names of the create directory nodes.
- CREATE_DIR_SUFFIX - Static variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
Constant suffix for the names of the create directory nodes.
- createCleanupJob(String, List, Job) - Method in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
Creates a cleanup job that removes the files from remote working directory.
- createCleanupJob(String, List, Job) - Method in interface edu.isi.pegasus.planner.refiner.cleanup.CleanupImplementation
-
Creates a cleanup job that removes the files from remote working directory.
- createCleanupJob(String, List, Job) - Method in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
Creates a cleanup job that removes the files from remote working directory.
- createConnectionURLProperties() - Method in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
-
Creates the properties that are required to compose the HTTP URL to the
MYOSG website.
- createDatabase(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Creates data base
- CreateDirectory - Class in edu.isi.pegasus.planner.refiner
-
This common interface that identifies the basic functions that need to be
implemented to introduce random directories in which the jobs are executed on
the remote execution pools.
- CreateDirectory(PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.CreateDirectory
-
A pratically nothing constructor !
- createEndLogMsg() - Method in class edu.isi.ikcap.workflows.util.logging.LogEvent
-
- createEntityHierarchyMessage(String, String, String, Collection<String>) - Method in interface edu.isi.pegasus.common.logging.Event
-
Creates a log message that connects the parent entities with the
children.
- createEntityHierarchyMessage(String, String, String, Collection<String>) - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Creates a log message that connects the parent entities with the
children.
- createEntityHierarchyMessage(String, String, String, Collection<String>) - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Creates a log message that connects the parent entities with the
children.
- createEntityHierarchyMessage(String, String, String, Collection<String>) - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Creates a log message that connects the parent entities with the
children.
- createEntityHierarchyMessage(String, String, String, Collection<String>) - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Creates a log message that connects the parent entities with the
children.
- createHeadNodeFS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.CreateSampleSiteCatalog
-
Creates an object describing the head node filesystem.
- createHeadNodeFS(VORSSiteInfo) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil
-
Creates an object describing the head node filesystem.
- createHeadNodeFS(MYOSGSiteInfoFacade) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogUtil
-
Creates an object describing the head node filesystem.
- createIdHierarchyLogMsg(String, String, String, Iterator<String>) - Static method in class edu.isi.ikcap.workflows.util.logging.LogEvent
-
- createLogMessage() - Method in interface edu.isi.pegasus.common.logging.Event
-
Creates a log message with the contents of the internal log buffer.
- createLogMessage() - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Creates a log message with the contents of the internal log buffer.
- createLogMessage() - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Creates a log message with the contents of the internal log buffer.
- createLogMessage() - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Creates a log message with the contents of the internal log buffer.
- createLogMessage() - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Creates a log message with the contents of the internal log buffer.
- createLogMessageAndReset() - Method in interface edu.isi.pegasus.common.logging.Event
-
Creates a log message with the contents of the internal log buffer.
- createLogMessageAndReset() - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Creates a log message with the contents of the internal log buffer.
- createLogMessageAndReset() - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Creates a log message with the contents of the internal log buffer.
- createLogMessageAndReset() - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Creates a log message with the contents of the internal log buffer.
- createLogMessageAndReset() - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Creates a log message with the contents of the internal log buffer.
- createLogMsg() - Method in class edu.isi.ikcap.workflows.util.logging.LogEvent
-
- createNoOPJob(String) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
It creates a NoOP job that runs on the submit host.
- createNoOPJob(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
It creates a NoOP job that runs on the submit host.
- createObject(String, List, List) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Composes the SiteData
object corresponding to the element
name in the XML document.
- createObject(Invocation, String, List, List) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
This method determines the actively parsed element, creates the
Java object that corresponds to the element, and sets the member
variables with the values of the attributes of the element.
- createObject(String, List, List) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogParser
-
Composes the SiteData
object corresponding to the element
name in the XML document.
- createObject(String, List, List) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
Composes the SiteData
object corresponding to the element
name in the XML document.
- createParserInstance() - Method in class edu.isi.pegasus.planner.parser.Parser
-
Creates an instance of the parser, and sets the various options to it.
- createPartition(List) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Creates a partition out of a list of nodes.
- createPropertyKey(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
Creates the property key
- createRegistrationJob(String, Job, Collection, ReplicaCatalogBridge) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default
-
Creates the registration jobs, which registers the materialized files on
the output site in the Replica Catalog.
- CreateSampleSiteCatalog - Class in edu.isi.pegasus.planner.catalog.site.classes
-
Generates a sample site catalog in XML.
- CreateSampleSiteCatalog() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.CreateSampleSiteCatalog
-
- createSetXBitJob(Job, Collection<FileTransfer>, int, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Adds the dirmanager job to the workflow, that do a chmod on the files
being staged.
- createSetXBitJob(Collection<FileTransfer>, String, String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Creates a dirmanager job, that does a chmod on the file being staged.
- createSetXBitJob(FileTransfer, String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Creates a dirmanager job, that does a chmod on the file being staged.
- createSetXBitJob(Job, Collection<FileTransfer>, int, int) - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Adds the dirmanager job to the workflow, that do a chmod on the files
being staged.
- createSiteCatalogEntry(VORSSiteInfo) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil
-
Creates a Pegasus SiteCatalogEntry
object from the information
in VORS.
- createSiteCatalogEntry(MYOSGSiteInfoFacade) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogUtil
-
Creates a Pegasus SiteCatalogEntry
object from the information
in VORS.
- createStartLogMsg() - Method in class edu.isi.ikcap.workflows.util.logging.LogEvent
-
- createSubmitDirectory(ADag, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Creates the submit directory for the workflow.
- createSubmitDirectory(String, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Creates the submit directory for the workflow.
- createSubmitDirectory(String, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Creates the submit directory for the workflow.
- createSubmitDirectory(ADag, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan
-
Creates the submit directory for the workflow.
- createSubmitDirectory(String, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan
-
Creates the submit directory for the workflow.
- createSymbolicLink(String, String, File, boolean) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
This method generates a symlink between two files
- createSymbolicLink(String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
This method generates a symlink between two files
- createSymbolicLink(String, String, boolean) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
This method generates a symlink between two files
- createSymbolicLink(String, String) - Method in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan
-
This method generates a symlink between two files
- createSymbolicLinktoCacheFile(PlannerOptions, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Creates a symbolic link to the DAX file in a dax sub directory in the
submit directory
- createSymbolicLinktoDAX(String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Creates a symbolic link to the DAX file in a dax sub directory in the
submit directory
- createSymlink(String, File) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the number of partitions referred to in the PDAX file.
- createSyncJobBetweenLevels(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
It creates a NoOP synch job that runs on the submit host.
- CreateTCDatabase - Class in edu.isi.pegasus.planner.catalog.transformation.impl
-
This class provides a bridge for creating and initializing transformation catalog on database .
- CreateTCDatabase(String, String, String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Creates a JDBCTC instance .
- createTransferJob(Job, String, Collection, Collection, String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
Constructs a general transfer job that handles multiple transfers per
transfer job.
- createTransferJob(Job, String, Collection, Collection, String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob
-
Constructs a general transfer job that handles single transfers per
transfer job.
- createTransferJob(Job, String, FileTransfer, Collection, String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob
-
Constructs a general transfer job that handles single transfers per
transfer job.
- createTransferJob(Job, String, Collection, Collection, String, int) - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
This constructs the Job object for the transfer node.
- createTransferJob(Job, FileTransfer, Collection, String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
Constructs a general transfer job that handles single transfers per
transfer job.
- createWorkerNodeFS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.CreateSampleSiteCatalog
-
Creates an object describing the worker node filesystem.
- createWorkerNodeFS(VORSSiteInfo) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil
-
Creates an object describing the worker node filesystem.
- createWorkerNodeFS(MYOSGSiteInfoFacade) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogUtil
-
Creates an object describing the worker node filesystem.
- CredentialHandler - Interface in edu.isi.pegasus.common.credential
-
The credential interface that defines the credentials that can be associated
with jobs.
- CredentialHandler.TYPE - Enum in edu.isi.pegasus.common.credential
-
An enumeration of valid types of credentials that are supported.
- CredentialHandler.TYPE() - Constructor for enum edu.isi.pegasus.common.credential.CredentialHandler.TYPE
-
- CredentialHandlerFactory - Class in edu.isi.pegasus.common.credential
-
A factory class to load the appropriate type of Condor Style impelementations.
- CredentialHandlerFactory() - Constructor for class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
The default constructor.
- CredentialHandlerFactoryException - Exception in edu.isi.pegasus.common.credential
-
Class to notify of failures while instantiating Condor Style implementations.
- CredentialHandlerFactoryException(String) - Constructor for exception edu.isi.pegasus.common.credential.CredentialHandlerFactoryException
-
Constructs a CondorStyleFactoryException
with no detail
message.
- CredentialHandlerFactoryException(String, String) - Constructor for exception edu.isi.pegasus.common.credential.CredentialHandlerFactoryException
-
Constructs a CondorStyleFactoryException
with the specified detailed
message.
- CredentialHandlerFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.common.credential.CredentialHandlerFactoryException
-
Constructs a CondorStyleFactoryException
with the
specified detailed message and a cause.
- CredentialHandlerFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.common.credential.CredentialHandlerFactoryException
-
Constructs a CondorStyleFactoryException
with the
specified detailed message and a cause.
- critEdge - Variable in class edu.isi.pegasus.planner.provisioner.Node
-
- cState - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser
-
Table to contain the state transition diagram for the parser.
- Currently - Class in edu.isi.pegasus.common.util
-
Create a common interface to handle obtaining string timestamps.
- Currently() - Constructor for class edu.isi.pegasus.common.util.Currently
-
Default ctor: Create a new instance with a default formatting
string for timestamps.
- Currently(String) - Constructor for class edu.isi.pegasus.common.util.Currently
-
Ctor: Create a new instance with a formatting string for time stamps.
- Currently(SimpleDateFormat) - Constructor for class edu.isi.pegasus.common.util.Currently
-
Ctor: Create a new instance with a formatting string for time stamps.
- DAG - Class in edu.isi.pegasus.planner.dax
-
DAG Class to hold the DAG job object.
- DAG(String, String) - Constructor for class edu.isi.pegasus.planner.dax.DAG
-
Create a DAG object
- DAG(DAG) - Constructor for class edu.isi.pegasus.planner.dax.DAG
-
Copy Constructor
- DAG(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.DAG
-
Create a DAG object
- DAG_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- DAG_ID - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
-
- DAG_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a chmod job that sets the xbit on the remote end.
- DAG_JOB - Static variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The constant string to write for dag job notifications.
- DAG_JOB_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The class ad for the jobId.
- dagInfo - Variable in class edu.isi.pegasus.planner.classes.ADag
-
The DagInfo object which contains the information got from parsing the
dax file.
- DagInfo - Class in edu.isi.pegasus.planner.classes
-
Holds the information needed to make one dag file corresponding to a Abstract
Dag.
- DagInfo() - Constructor for class edu.isi.pegasus.planner.classes.DagInfo
-
The default constructor.
- DAGJob - Class in edu.isi.pegasus.planner.classes
-
This is a data class that stores the contents of the DAG job in a DAX conforming
to schema 3.0 or higher.
- DAGJob() - Constructor for class edu.isi.pegasus.planner.classes.DAGJob
-
The default constructor.
- DAGJob(Job) - Constructor for class edu.isi.pegasus.planner.classes.DAGJob
-
The overloaded construct that constructs a DAG job by wrapping around
the Job
job.
- dagJobs - Variable in class edu.isi.pegasus.planner.classes.DagInfo
-
Vector of String objects containing the jobname_id of jobs making
the abstract dag.
- DAGMAN - Static variable in class edu.isi.pegasus.planner.classes.Profile
-
- Dagman - Class in edu.isi.pegasus.planner.namespace
-
This profile namespace is the placeholder for the keys that go into the .dag
file .
- Dagman() - Constructor for class edu.isi.pegasus.planner.namespace.Dagman
-
The default constructor.
- Dagman(Map) - Constructor for class edu.isi.pegasus.planner.namespace.Dagman
-
The overloaded constructor.
- Dagman(Map, String) - Constructor for class edu.isi.pegasus.planner.namespace.Dagman
-
The overloaded constructor.
- DAGMAN_KNOBS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The dagman knobs controlled through property.
- DAGMAN_KNOBS - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The dagman knobs controlled through property.
- DAGMAN_PROPERTIES_PREFIX - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The prefix for DAGMan specific properties
- dagmanVariables - Variable in class edu.isi.pegasus.planner.classes.Job
-
The DAGMAN namespace profile variable holding the dagman profiles.
- Data - Class in edu.isi.pegasus.planner.classes
-
This is the container for all the Data classes.
- Data() - Constructor for class edu.isi.pegasus.planner.classes.Data
-
The default constructor.
- Data - Class in edu.isi.pegasus.planner.invocation
-
This class is transient for XML parsing.
- Data() - Constructor for class edu.isi.pegasus.planner.invocation.Data
-
Default c'tor: Construct a hollow shell and allow further
information to be added later.
- Data(String) - Constructor for class edu.isi.pegasus.planner.invocation.Data
-
Constructs a piece of data.
- Data(String, boolean) - Constructor for class edu.isi.pegasus.planner.invocation.Data
-
Constructs a piece of data.
- DATA_CHARACTERIZATION_PROGRAM - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- DATA_FILE - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The type denoting that a logical file is a data file.
- data_loc - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- data_loc - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- data_space - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- data_space - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- DATA_TYPE - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The string value of a file that is of type data.
- Database - Class in edu.isi.pegasus.planner.catalog.transformation.impl
-
- Database() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
- Database - Class in edu.isi.pegasus.planner.catalog.work
-
This class implements a work catalog on top of a simple table in a
JDBC database.
- Database(String, String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.work.Database
-
Convenience c'tor: Establishes the connection to the work
catalog database.
- Database() - Constructor for class edu.isi.pegasus.planner.catalog.work.Database
-
Default empty constructor creates an object that is not yet connected
to any database.
- DATABASE_FORMAT - Static variable in class edu.isi.pegasus.planner.client.TCConverter
-
The database format.
- DataReuseEngine - Class in edu.isi.pegasus.planner.refiner
-
The data reuse engine reduces the workflow on the basis of existing output
files of the workflow found in the Replica Catalog.
- DataReuseEngine(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
The constructor
- DataReuseEngine.BooleanBag - Class in edu.isi.pegasus.planner.refiner
-
A bag implementation that cam be used to hold a boolean value associated with the
graph node
- DataReuseEngine.BooleanBag() - Constructor for class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag
-
The default constructor.
- DATE_FORMAT - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
-
The date format to be used while passing dates to the URL construction.
- DATE_FORMAT - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.test.TestMyOSG
-
- DATE_KW - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
- dateEnd - Variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
- dateStart - Variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
- DateUtils - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.util
-
- DateUtils() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.DateUtils
-
- DAX - Class in edu.isi.pegasus.planner.dax
-
Creates a DAX job object
- DAX(String, String) - Constructor for class edu.isi.pegasus.planner.dax.DAX
-
Create a DAX job object
- DAX(DAX) - Constructor for class edu.isi.pegasus.planner.dax.DAX
-
Copy Constructor
- DAX(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.DAX
-
Create a DAX job object
- DAX2CDAG - Class in edu.isi.pegasus.planner.parser.dax
-
This creates a dag corresponding to one particular partition of the whole
abstract plan.
- DAX2CDAG(PegasusProperties, String) - Constructor for class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
The overloaded constructor.
- DAX2Graph - Class in edu.isi.pegasus.planner.parser.dax
-
This callback implementation ends up building a detailed structure of the
graph referred to by the abstract plan in dax, that should make the graph
traversals easier.
- DAX2Graph(PegasusProperties, String) - Constructor for class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
The overloaded constructor.
- DAX2LabelGraph - Class in edu.isi.pegasus.planner.parser.dax
-
The callback, that ends up building a label graph.
- DAX2LabelGraph(PegasusProperties, String) - Constructor for class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph
-
The overloaded constructor.
- DAX2Metadata - Class in edu.isi.pegasus.planner.parser.dax
-
A callback that causes the parser to exit after the metadata about the DAX
has been parsed.
- DAX2Metadata(PegasusProperties, String) - Constructor for class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
The overloaded constructor.
- DAX2NewGraph - Class in edu.isi.pegasus.planner.parser.dax
-
An exploratory implementation that builds on the DAX2Graph.
- DAX2NewGraph(PegasusProperties, String) - Constructor for class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
The overloaded constructor.
- DAX_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- DAX_ID - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
-
- DAX_INDEX_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The dax index
- DAX_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a chmod job that sets the xbit on the remote end.
- DAX_JOB - Static variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The constant string to write for dax job notifications.
- DAX_JOB_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The classad for generating the DAX ID
- DAX_LABEL_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The DAX label.
- DAX_PARSER2_CLASS - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
The DAXParser3 classname
- DAX_PARSER3_CLASS - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
The DAXParser3 classname
- DAX_REPLICA_STORE_CATALOG_IMPLEMENTER - Static variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
The name of the Replica Catalog Implementer that serves as the source for
cache files.
- DAX_REPLICA_STORE_CATALOG_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
The name of the source key for Replica Catalog Implementer that serves as
the repository for DAX Replica Store
- DAX_REPLICA_STORE_SUFFIX - Static variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
Suffix to be applied for the DAX Replica Store.
- DAX_VERRSION_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The DAX version.
- DAX_VERSION_3_2_0 - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
- DAX_VERSION_3_2_0 - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
- DAX_VERSION_3_3_0 - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
- DAX_VERSION_WITHOUT_DOUBLE_NEGATIVE - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The constant designating the version when the double negative transfer
and registration flags were removed.
- DAXJob - Class in edu.isi.pegasus.planner.classes
-
This is a data class that stores the contents of the DAX job in a DAX conforming
to schema 3.0 or higher.
- DAXJob() - Constructor for class edu.isi.pegasus.planner.classes.DAXJob
-
The default constructor.
- DAXJob(Job) - Constructor for class edu.isi.pegasus.planner.classes.DAXJob
-
The overloaded construct that constructs a DAX job by wrapping around
the Job
job.
- DAXParser - Interface in edu.isi.pegasus.planner.parser.dax
-
An interface for all the DAX Parsers
- DAXParser2 - Class in edu.isi.pegasus.planner.parser.dax
-
This class parses the XML file whichis generated by Abstract Planner and ends
up making an ADag object which contains theinformation to make the Condor
submit files.
- DAXParser2(PegasusBag) - Constructor for class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The default constructor
- DAXParser3 - Class in edu.isi.pegasus.planner.parser.dax
-
This class uses the Xerces SAX2 parser to validate and parse an XML
document conforming to the DAX Schema 3.2
- DAXParser3(PegasusBag) - Constructor for class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
The overloaded constructor.
- DAXParser3.Arguments - Class in edu.isi.pegasus.planner.parser.dax
-
Private class to handle mix data content for arguments tags.
- DAXParser3.Arguments() - Constructor for class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments
-
The default constructor
- DAXParserFactory - Class in edu.isi.pegasus.planner.parser
-
A factory class to load the appropriate DAX Parser and Callback implementations that need
to be passed to the DAX Parser.
- DAXParserFactory() - Constructor for class edu.isi.pegasus.planner.parser.DAXParserFactory
-
- DAXParserFactoryException - Exception in edu.isi.pegasus.planner.parser
-
Class to notify of failures while instantiating DAXCallback implementations.
- DAXParserFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.parser.DAXParserFactoryException
-
Constructs a DAXParserFactoryException
with no detail
message.
- DAXParserFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.parser.DAXParserFactoryException
-
Constructs a DAXParserFactoryException
with the specified detailed
message.
- DAXParserFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.parser.DAXParserFactoryException
-
Constructs a DAXParserFactoryException
with the
specified detailed message and a cause.
- DAXParserFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.parser.DAXParserFactoryException
-
Constructs a DAXParserFactoryException
with the
specified detailed message and a cause.
- DAXReplicaStore - Class in edu.isi.pegasus.planner.code.generator
-
A generator that writes out the replica store containing a file based replica
catalog that has the file locations mentioned in the DAX.
- DAXReplicaStore() - Constructor for class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
- DAXValidator - Class in edu.isi.pegasus.planner.client
-
This class reads to validate a DAX document.
- DAXValidator(boolean) - Constructor for class edu.isi.pegasus.planner.client.DAXValidator
-
default c'tor
- DAXWriter - Class in edu.isi.pegasus.planner.partitioner
-
The abstract class that identifies the interface for writing out a dax
corresponding to a partition.
- DAXWriter() - Constructor for class edu.isi.pegasus.planner.partitioner.DAXWriter
-
The default constructor
- DAXWriter(String, String) - Constructor for class edu.isi.pegasus.planner.partitioner.DAXWriter
-
The overloaded constructor.
- DB_ALL_PREFIX - Static variable in interface edu.isi.pegasus.planner.catalog.Catalog
-
The default DB Driver properties prefix.
- DB_PREFIX - Static variable in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
The DB Driver properties prefix.
- DB_PREFIX - Static variable in interface edu.isi.pegasus.planner.catalog.WorkCatalog
-
The DB Driver properties prefix.
- DB_PREFIX - Static variable in class edu.isi.pegasus.planner.ranking.GetDAX
-
The DB Driver properties prefix.
- DEBUG_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
The level value, to indicate a DEBUG message.
- DEBUG_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default
-
The type value to indicate a DEBUG message.
- decide(LoggingEvent) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage.Log4jFilter
-
- decrement(Job) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Decrement the metrics when on the basis of type of job.
- decrementLogging() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Deccrements the logging level by 1.
- decrementLogging() - Method in class edu.isi.pegasus.planner.client.SCClient
-
Decrements the logging level by 1.
- decrementLogging() - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Decrements the logging level by 1.
- Default - Class in edu.isi.pegasus.common.logging.logger
-
The logging class that to log messages at different levels.
- Default() - Constructor for class edu.isi.pegasus.common.logging.logger.Default
-
The constructor.
- DEFAULT - Static variable in class edu.isi.pegasus.common.util.Separator
-
Deprecated.
The default namespace is null
.
- Default - Class in edu.isi.pegasus.planner.selector.replica
-
The default replica selector that is used if non is specifed by the user.
- Default(PegasusProperties) - Constructor for class edu.isi.pegasus.planner.selector.replica.Default
-
The overloaded constructor, that is called by load method.
- Default - Class in edu.isi.pegasus.planner.transfer.refiner
-
The default transfer refiner, that implements the multiple refiner.
- Default(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Default
-
The overloaded constructor.
- DEFAULT_ADAG_COUNT_ATTRIBUTE - Static variable in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Default attribute value for the count attribute
- DEFAULT_ADAG_INDEX_ATTRIBUTE - Static variable in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Default index value for the count attribute
- DEFAULT_ARCHITECTURE - Static variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
The default Architecture the entry is associated with if none is specified
- DEFAULT_BPS - Static variable in class edu.isi.pegasus.planner.provisioner.Edge
-
- DEFAULT_BUNDLE_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
The default bundling factor that identifies the number of transfer jobs
that are being created per execution pool for the workflow.
- DEFAULT_CALLBACK_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
Package to prefix "just" class names with.
- DEFAULT_CHMOD_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default priority key associated with chmod jobs.
- DEFAULT_CHUNK_FACTOR - Static variable in class edu.isi.pegasus.planner.client.RCClient
-
The default chunk factor that is used for biting off chunks of large
files.
- DEFAULT_CLEANUP_CATEGORY_KEY - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
Default category for registration jobs
- DEFAULT_CLEANUP_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default priority key associated with the cleanup jobs.
- DEFAULT_COLLAPSE_FACTOR - Static variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
The default collapse factor for collapsing jobs with same logical name
scheduled onto the same execution pool.
- DEFAULT_COLLAPSE_FACTOR - Static variable in class edu.isi.pegasus.planner.partitioner.Horizontal
-
The default collapse factor for collapsing jobs with same logical name
scheduled onto the same execution pool.
- DEFAULT_COMP_ERROR_PERCENTAGE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_COMP_MULTIPLICATION_FACTOR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_COMP_VARIANCE_PERCENTAGE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_CONDOR_BIN_DIR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_CONDOR_COLLECTOR - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The default condor collector to query to for non LIGO VO's
- DEFAULT_CONDOR_COLLECTOR_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The property key without the pegasus prefix'es to get the condor collector host.
- DEFAULT_CONDOR_CONFIG_DIR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_CREATE_DIR_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default priority key associated with the create dir jobs.
- DEFAULT_CTX - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- DEFAULT_DATA_MULTIPLICATION_FACTOR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_DATABASE - Static variable in class edu.isi.pegasus.planner.client.TCConverter
-
The default database .
- DEFAULT_DAX_CALLBACK - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The default DAXCallback that is loaded, if none is specified by the user.
- DEFAULT_DAX_PARSER_CLASS - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
The default DAXParser classname
- DEFAULT_EXEC_DIR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_FORMAT - Static variable in class edu.isi.pegasus.common.util.Currently
-
Default time format, which is compact and has a timezone
- DEFAULT_GRID - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
-
The default VO to use if none is specified
- DEFAULT_GRID - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The default Grid to retreive the sites for.
- DEFAULT_GRID_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The property key without the pegasus prefix'es to get the grid.
- DEFAULT_GRIDSTART_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_INTER_SITE_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default priority key associated with the inter site transfer jobs.
- DEFAULT_INVOKE_LENGTH - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_JOB_AGGREGATOR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_KEY - Static variable in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
The default key to use for logging messages
- DEFAULT_LABEL_KEY - Static variable in class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph
-
The default key for the VDS namespace profile, that is used in case none
is specified by the user.
- DEFAULT_LATENCY - Static variable in class edu.isi.pegasus.planner.provisioner.Edge
-
- DEFAULT_LIGO_CONDOR_COLLECTOR - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The default condor collector to query to for LIGO VO
- DEFAULT_LOCAL_STAGE_IN_BUNDLE_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The default bundling factor that identifies the number of transfer jobs
that are being created per execution pool for stageing in data for
the workflow.
- DEFAULT_LOCAL_STAGE_IN_CLUSTER_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
The default clustering factor that identifies the number of transfer jobs
that are being created per execution pool for stageing in data for
the workflow.
- DEFAULT_LOCAL_STAGE_OUT_BUNDLE_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The default bundling factor that identifies the number of transfer jobs
that are being created per execution pool for stageing out data for
the workflow.
- DEFAULT_LOCAL_STAGE_OUT_CLUSTER_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
The default bundling factor that identifies the number of transfer jobs
that are being created per execution pool for stageing out data for
the workflow.
- DEFAULT_LOGGER - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
The default Logger
- DEFAULT_LOGGING_FILE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_LOGGING_LEVEL - Static variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The default logging level.
- DEFAULT_LRC_IGNORE_URL - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_MEGADAG_MODE - Static variable in class edu.isi.pegasus.planner.client.CPlanner
-
The default megadag mode that is used for generation of megadags in
deferred planning.
- DEFAULT_METADATA_TYPE - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Constant denoting default metadata type
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.common.credential.CredentialHandlerFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.common.logging.LogFormatterFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.common.logging.LogManagerFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.common.util.FactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.catalog.site.SiteFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.catalog.transformation.TransformationFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.catalog.work.WorkFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in class edu.isi.pegasus.planner.classes.DagInfo
-
The default name for the ADag object, if not supplied in the DAX.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.cluster.ClustererFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.code.CodeGeneratorFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.code.GridStartFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.parser.DAXParserFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.partitioner.PartitionerFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.refiner.cleanup.CleanupFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.selector.site.SiteSelectorFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.transfer.implementation.TransferImplementationFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.transfer.refiner.TransferRefinerFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.transfer.sls.SLSFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NUMBER_OF_FREE_NODES - Static variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The default number of nodes that are associated with a site if not found
in the site catalog.
- DEFAULT_NUMBER_OF_RESCUE_TRIES - Static variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The value of number of rescue retries if no value is specified
- DEFAULT_OS - Static variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
The default OS the entry is associated with if none is specified
- DEFAULT_OUTPUT_DIR - Static variable in class edu.isi.pegasus.planner.client.PlotNodeUsage
-
The default output directory.
- DEFAULT_OUTPUT_DIR - Static variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage
-
The default output directory.
- DEFAULT_OUTPUT_FORMAT - Static variable in class edu.isi.pegasus.planner.client.SCClient
-
The default output format.
- DEFAULT_PACKAGE - Static variable in class edu.isi.pegasus.planner.catalog.replica.ReplicaFactory
-
Package to prefix "just" class names with.
- DEFAULT_PACKAGE - Static variable in class edu.isi.pegasus.planner.catalog.work.WorkFactory
-
Package to prefix "just" class names with.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
The default package where the all the implementing classes are supposed to
reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.common.logging.LogFormatterFactory
-
The default package where all the implementations reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.common.logging.LogManagerFactory
-
The default package where all the implementations reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory
-
The default package where all the implementations reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.catalog.site.SiteFactory
-
The default package where all the implementations reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationFactory
-
The default package where all the implementations reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactory
-
Package to prefix "just" class names with.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.cluster.ClustererFactory
-
The default package where all the implementations reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.code.CodeGeneratorFactory
-
The default package where the all the implementing classes are supposed to
reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The default package where the all the implementing classes are supposed to
reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The package name where the implementations of this interface reside
by default.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactory
-
Package to prefix "just" class names with.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.partitioner.PartitionerFactory
-
Package to prefix "just" class names with.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactory
-
The default package where all the implementations reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactory
-
The default package where all the implementations reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.CleanupFactory
-
The default package where the all the implementing classes are supposed to
reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactory
-
The default package where the all the implementing classes provided with
the VDS reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.selector.site.SiteSelectorFactory
-
The default package where the all the implementing classes provided with
the VDS reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
The default package where the implementations reside, which this factory
loads.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.transfer.refiner.RefinerFactory
-
The default package where the implementations reside, which this factory
loads.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.transfer.sls.SLSFactory
-
The default package where the all the implementing classes are supposed to
reside.
- DEFAULT_PARSER_NAME - Variable in class edu.isi.pegasus.planner.parser.Parser
-
Default parser name.
- DEFAULT_PARSER_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
Package to prefix "just" class names with.
- DEFAULT_PARTITIONER_TYPE - Static variable in class edu.isi.pegasus.planner.client.PartitionDAX
-
The name of the default partitioner that is loaded, if none is specified
by the user.
- DEFAULT_PARTITIONING_CLASS - Static variable in class edu.isi.pegasus.planner.partitioner.PartitionerFactory
-
The name of the class that does level based partitioning.
- DEFAULT_POOL_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_POST_SCRIPT_ARGUMENTS_KEY_VALUE - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The default value for the arguments passed to postscript
- DEFAULT_PPS_PROVIDER - Static variable in class edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactory
-
The default PPS implementation to be used.
- DEFAULT_PRE_SCRIPT_ARGUMENTS_KEY_VALUE - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The default value for the arguments passed to prescript
- DEFAULT_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
The default priority key associated with the cleanup jobs.
- DEFAULT_RC_COLLECTION - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_REFINER - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The default transfer refiner name.
- DEFAULT_REFINER_IMPLEMENTATION - Static variable in class edu.isi.pegasus.planner.transfer.refiner.RefinerFactory
-
The default refiner implementation that is picked up.
- DEFAULT_REGISTRATION_CATEGORY_KEY - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Default category for registration jobs
- DEFAULT_REMOTE_STAGE_IN_BUNDLE_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The default bundling factor that identifies the number of transfer jobs
that are being created per execution pool for stageing in data for
the workflow.
- DEFAULT_REMOTE_STAGE_IN_CLUSTER_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
The default clustering factor that identifies the number of transfer jobs
that are being created per execution pool for stageing in data for
the workflow.
- DEFAULT_REMOTE_STAGE_OUT_BUNDLE_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The default bundling factor that identifies the number of transfer jobs
that are being created per execution pool for stageing out data for
the workflow.
- DEFAULT_REMOTE_STAGE_OUT_CLUSTER_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
The default bundling factor that identifies the number of transfer jobs
that are being created per execution pool for stageing out data for
the workflow.
- DEFAULT_REPLICA_REG_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default priority key associated with the replica registration jobs.
- DEFAULT_REPLICA_SELECTOR - Static variable in class edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactory
-
The name of the class in the DEFAULT package, that corresponds to the
default replica selector.
- DEFAULT_RETRIEVE_VALIDATED_SITES - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The default VO to use to query the condor collector.
- DEFAULT_RETRIEVE_VALIDATED_SITES_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The property key without the pegasus prefix'es to get the VO.
- DEFAULT_RETRY_VALUE - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The default value for the JOB Retries
- DEFAULT_RLI_URL - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_RLS_EXIT_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_RLS_QUERY_ATTRIB - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_RLS_QUERY_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_RLS_TIMEOUT - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_RM_LOCATION - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
The default path to rm executable.
- DEFAULT_RM_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
The default logical name to rm executable.
- DEFAULT_SETUP_TRANSFER_IMPLEMENTATION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
- DEFAULT_SITE_SELECTOR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_SITE_SELECTOR - Static variable in class edu.isi.pegasus.planner.selector.site.SiteSelectorFactory
-
The name of the class in the DEFAULT package, that corresponds to the
default site selector.
- DEFAULT_SITE_SELECTOR_KEEP - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_SITE_SELECTOR_TIMEOUT - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_SIZE - Static variable in class edu.isi.pegasus.planner.provisioner.Edge
-
- DEFAULT_SLS_IMPL_CLASS - Static variable in class edu.isi.pegasus.planner.transfer.sls.SLSFactory
-
The name of the class implementing the condor code generator.
- DEFAULT_STAGE_IN_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default priority key associated with the stagein jobs.
- DEFAULT_STAGE_OUT_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default priority key associated with the stage out jobs.
- DEFAULT_STAGING_DELIMITER - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_STORAGE_DIR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_SUBDAG_CATEGORY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default category for the sub dax jobs.
- DEFAULT_SUBDAX_CATEGORY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The default category for the sub dax jobs.
- DEFAULT_TC_CLASS - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TCMode
-
- DEFAULT_TC_CLASS - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationFactory
-
Some Constants for backward compatibility.
- DEFAULT_TC_MAPPER_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_TC_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_TIMING_SOURCE - Static variable in class edu.isi.pegasus.planner.client.PlotNodeUsage
-
The default timing source.
- DEFAULT_TIMING_SOURCE - Static variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage
-
The default timing source.
- DEFAULT_TIMING_UNITS - Static variable in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus
-
The default timing units.
- DEFAULT_TIMING_UNITS - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus
-
The default timing units.
- DEFAULT_TRANSFER_IMPLEMENTATION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
- DEFAULT_TRANSFER_PROCESSES - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_TRANSFER_STREAMS - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_TX_SELECTOR_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- DEFAULT_VO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
-
The default VO to use if none is specified
- DEFAULT_VO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The default VO to use to query the condor collector.
- DEFAULT_VO_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The property key without the pegasus prefix'es to get the VO.
- DEFAULT_VORS_HOST - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS
-
The default VORS mVORSHost.
- DEFAULT_VORS_PORT - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS
-
The default VORS mVORSPort.
- DEFAULT_WEIGHT - Static variable in class edu.isi.pegasus.planner.provisioner.Node
-
- DEFAULT_XML_PRODUCER - Static variable in class edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactory
-
The default XML producer implementation to be used.
- defaultBrainDumpEntries(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Braindump
-
Returns default braindump entries.
- DefaultImplementation - Class in edu.isi.pegasus.planner.refiner.createdir
-
The default implementation for creating create dir jobs.
- DefaultImplementation() - Constructor for class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
- defaultParameters() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGURLGenerator
-
Returns the default parameters
- defaultPOSTScript() - Method in interface edu.isi.pegasus.planner.code.GridStart
-
Returns the SHORT_NAME for the POSTScript implementation that is used
to be as default with this GridStart implementation.
- defaultPOSTScript() - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Returns the SHORT_NAME for the POSTScript implementation that is used
to be as default with this GridStart implementation.
- defaultPOSTScript() - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Returns the SHORT_NAME for the POSTScript implementation that is used
to be as default with this GridStart implementation.
- defaultPOSTScript() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Returns the SHORT_NAME for the POSTScript implementation that is used
to be as default with this GridStart implementation.
- defaultProps() - Static method in class edu.isi.pegasus.common.util.CommonProperties
-
Set some defaults, should values be missing in the dataset.
- DefaultStreamGobblerCallback - Class in edu.isi.pegasus.common.util
-
The default callback for the stream gobbler, that logs all the messages to
a particular logging level.
- DefaultStreamGobblerCallback(int) - Constructor for class edu.isi.pegasus.common.util.DefaultStreamGobblerCallback
-
The overloaded constructor.
- defaultTCEntry(String, String, String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Returns a default TC entry to be used in case entry is not found in the
transformation catalog.
- defaultTCEntry(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns a default TC entry to be used in case entry is not found in the
transformation catalog.
- defaultTCEntry(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Returns a default TC entry to be used in case entry is not found in the
transformation catalog.
- defaultTCEntry(String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns a default TC entry to be used in case entry is not found in the
transformation catalog.
- defaultTCEntry(String) - Method in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
Returns a default TC entry to be used in case entry is not found in the
transformation catalog.
- defaultTCEntry() - Static method in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
Returns a default TransformationCatalogEntry object for the rm executable.
- defaultTCEntry(String) - Method in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
Returns a default TC entry to be used in case entry is not found in the
transformation catalog.
- defaultTCEntry(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
Returns a default TC entry to be used in case entry is not found in the
transformation catalog.
- defaultTCEntry(String, String, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
Returns a default TC entry to be used in case entry is not found in the
transformation catalog.
- defaultTCEntry(String, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Returns a default TC entry to be used in case entry is not found in the
transformation catalog.
- defaultTCEntry(String, String, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Returns a default TC entry to be used in case entry is not found in the
transformation catalog.
- defaultTCRCEntry() - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Returns a default TC entry to be used in case entry is not found in the
transformation catalog.
- defaultUntarTCEntry(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Returns a default TC entry to be used in case entry is not found in the
transformation catalog.
- defaultXBitTCEntry(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Returns a default TC entry to be used in case entry is not found in the
transformation catalog.
- delete(Map, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Deletes multiple mappings into the replica catalog.
- delete(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Deletes a specific mapping from the replica catalog.
- delete(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Deletes a very specific mapping from the replica catalog.
- delete(String, String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Deletes all PFN entries for a given LFN from the replica catalog
where the PFN attribute is found, and matches exactly the object
value.
- delete(String, String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Deletes all PFN entries for a given LFN from the replica catalog where
the PFN attribute is found, and matches exactly the object value.
- delete(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Deletes a very specific mapping from the replica catalog.
- delete(Map, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Deletes multiple mappings into the replica catalog.
- delete(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Deletes a specific mapping from the replica catalog.
- delete(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Deletes a specific mapping from the replica catalog.
- delete(Map, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Deletes multiple mappings into the replica catalog.
- delete(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Deletes a very specific mapping from the replica catalog.
- delete(String, String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Deletes all PFN entries for a given LFN from the replica catalog
where the PFN attribute is found, and matches exactly the object
value.
- delete(Map, boolean) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Deletes multiple mappings into the replica catalog.
- delete(String, String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Deletes a specific mapping from the replica catalog.
- delete(String, ReplicaCatalogEntry) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Deletes a very specific mapping from the replica catalog.
- delete(String, String, Object) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Deletes all PFN entries for a given LFN from the replica catalog
where the PFN attribute is found, and matches exactly the object
value.
- delete(String, String, String, String) - Method in class edu.isi.pegasus.planner.catalog.work.Database
-
Deletes a mapping from the work catalog.
- delete(String, String, String, String) - Method in interface edu.isi.pegasus.planner.catalog.WorkCatalog
-
Deletes a mapping from the work catalog.
- delete - Variable in class edu.isi.pegasus.planner.client.TCClient
-
- deleteByResource(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Deletes all PFN entries for a given LFN from the replica catalog
where the resource handle is found.
- deleteByResource(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Deletes all PFN entries for a given LFN from the replica catalog where
the resource handle is found.
- deleteByResource(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Deletes all PFN entries for a given LFN from the replica catalog
where the resource handle is found.
- deleteByResource(String, String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Deletes all PFN entries for a given LFN from the replica catalog
where the resource handle is found.
- deleted - Variable in class edu.isi.pegasus.planner.provisioner.Edge
-
- DELETED_JOBS_LEVEL - Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The MAX level is assigned as the level for deleted jobs.
- deleteDatabase(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Deletes the database
- deleteLFNProfiles(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Delete a list of profiles or all the profiles associated with a logical
transformation.
- deleteLFNProfiles(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Delete a list of profiles or all the profiles associated with a logical
transformation.
- deleteLFNProfiles(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Delete a list of profiles or all the profiles associated with a logical
transformation.
- deleteLFNProfiles(String, String, String, List) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Delete a list of profiles or all the profiles associated with a logical
transformation.
- deletePFNProfiles(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Delete a list of profiles or all the profiles associated with a pfn on a
resource and of a type.
- deletePFNProfiles(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Delete a list of profiles or all the profiles associated with a pfn on a
resource and of a type.
- deletePFNProfiles(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Delete a list of profiles or all the profiles associated with a pfn on a
resource and of a type.
- deletePFNProfiles(String, TCType, String, List) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Delete a list of profiles or all the profiles associated with a pfn on a
resource and of a type.
- deleteProfile(Profile, long, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Delete a given lfn or pfn profile
- DELIMITER - Static variable in class edu.isi.pegasus.planner.classes.Job
-
The delimiter that has to be used to combine the name for the staged
executable.
- DELIMITER - Static variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The delimiter with which to separate different fields in the
notifications file.
- DEPLOY_WORKER_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Constant suffix for the names of the deployment nodes.
- DeployWorkerPackage - Class in edu.isi.pegasus.planner.refiner
-
The refiner that is responsible for adding
- setup nodes that deploy a worker package on each deployment site at start
of workflow execution
- cleanup nodes that undeploy a worker package on each deployment site at end
workflow execution
- DeployWorkerPackage(PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
A pratically nothing constructor !
- DEPRECATED_BUNDLE_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The deprecated bundle stagein key.
- DEPRECATED_CHANGE_DIR_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The deprecated change dir key.
- DEPRECATED_CONDOR_CONFIGURATION_VALUE - Static variable in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
The value for the condor configuration.
- DEPRECATED_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Namespace
-
The key is deprecated.
- DEPRECATED_S3_CONFIGURATION_VALUE - Static variable in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
The value for the S3 configuration.
- deprecatedKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Warns about a deprecated profile key.
- deprecatedTable() - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Singleton access to the deprecated table that holds the deprecated keys,
and the keys that replace them.
- deprecatedTable() - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Singleton access to the deprecated table that holds the deprecated keys,
and the keys that replace them.
- deprecatedValueMessage(String, String, String) - Method in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
Returns the deperecated value message
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The name of the underlying derivation.
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The logical name of the transformation that creates directories on the
remote execution pools.
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The logical name of the transformation that creates directories on the
remote execution pools.
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The logical name of the transformation for the worker package
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The logical name of the transformation that removes directories on the
remote execution pools.
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
The name of the underlying derivation.
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
The name of the underlying derivation.
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
The name of the underlying derivation.
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
The name of the underlying derivation.
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The name of the underlying derivation.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The derivation namespace for the cluster jobs.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The derivation namespace for the job.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The derivation namespace for the create dir jobs.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The derivation namespace for the create dir jobs.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The derivation namespace for the worker package.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The derivation namespace for the create dir jobs.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
The derivation namespace for for the transfer job.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
The derivation namespace for for the transfer job.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
The derivation namespace for for the transfer job.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
The derivation namespace for for the transfer job.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The derivation namespace for for the transfer job.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The version number for the derivations for cluster jobs.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The derivation version number for the job.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The version number for the derivations for create dir jobs.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The version number for the derivations for create dir jobs.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The version number for the derivations for worker package.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The version number for the derivations for create dir jobs.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
The derivation version number for the transfer job.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
The derivation version number for the transfer job.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
The derivation version number for the transfer job.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
The derivation version number for the transfer job.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The derivation version number for the transfer job.
- descendants - Variable in class edu.isi.pegasus.planner.provisioner.Node
-
- DESCRIPTION - Static variable in class edu.isi.pegasus.common.credential.impl.Irods
-
The description.
- DESCRIPTION - Static variable in class edu.isi.pegasus.common.credential.impl.Proxy
-
The description.
- DESCRIPTION - Static variable in class edu.isi.pegasus.common.credential.impl.S3CFG
-
The description
- DESCRIPTION - Static variable in class edu.isi.pegasus.common.credential.impl.Ssh
-
The description
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Describes the transformation catalog mode.
- description() - Method in interface edu.isi.pegasus.planner.cluster.Clusterer
-
Returns a textual description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
A short description about the partitioner.
- description() - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Returns a textual description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.cluster.Vertical
-
A short description about the partitioner.
- description() - Method in class edu.isi.pegasus.planner.cluster.Vertical
-
Returns a textual description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.partitioner.BFS
-
A short description about the partitioner.
- description() - Method in class edu.isi.pegasus.planner.partitioner.BFS
-
Returns a textual description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.partitioner.Horizontal
-
A short description about the partitioner.
- description() - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Returns a textual description of the partitioner implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.partitioner.Label
-
A short description about the partitioner.
- description() - Method in class edu.isi.pegasus.planner.partitioner.Label
-
Returns a textual description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.partitioner.One2One
-
A short description about the partitioner.
- description() - Method in class edu.isi.pegasus.planner.partitioner.One2One
-
Returns a textual description of the transfer implementation.
- description() - Method in class edu.isi.pegasus.planner.partitioner.Partitioner
-
Returns a textual description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.partitioner.Whole
-
A short description about the partitioner.
- description() - Method in class edu.isi.pegasus.planner.partitioner.Whole
-
Returns a textual description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
A short description of the transfer implementation.
- description() - Method in class edu.isi.pegasus.planner.selector.replica.Default
-
Returns a short description of the replica selector.
- description() - Method in class edu.isi.pegasus.planner.selector.replica.Local
-
Returns a short description of the replica selector.
- description() - Method in class edu.isi.pegasus.planner.selector.replica.Regex
-
Returns a short description of the replica selector.
- description() - Method in class edu.isi.pegasus.planner.selector.replica.Restricted
-
Returns a short description of the replica selector.
- description() - Method in interface edu.isi.pegasus.planner.selector.ReplicaSelector
-
Returns a short description of the replica selector, that is being
implemented by the implementing class.
- description() - Method in class edu.isi.pegasus.planner.selector.site.Group
-
Returns the description of the site selector.
- description() - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
This method returns a String describing the site selection technique
that is being implemented by the implementing class.
- description() - Method in class edu.isi.pegasus.planner.selector.site.Heft
-
This method returns a String describing the site selection technique
that is being implemented by the implementing class.
- description() - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
Returns a brief description of the site selection technique
implemented by this class.
- description() - Method in class edu.isi.pegasus.planner.selector.site.Random
-
Returns a brief description of the site selection technique being used.
- description() - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin
-
Returns a brief description of the site selection techinque implemented by
this class.
- description() - Method in interface edu.isi.pegasus.planner.selector.SiteSelector
-
This method returns a String describing the site selection technique
that is being implemented by the implementing class.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
A short description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
A short description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
A short description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
A short description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
A short description of the transfer refinement.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
A short description of the transfer refinement.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
A short description of the transfer refinement.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Default
-
A short description of the transfer refinement.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.sls.Condor
-
A short description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
A short description of the transfer implementation.
- Descriptor - Class in edu.isi.pegasus.planner.invocation
-
This class is the container for a file descriptor object.
- Descriptor() - Constructor for class edu.isi.pegasus.planner.invocation.Descriptor
-
Default c'tor: Construct a hollow shell and allow further
information to be added later.
- Descriptor(int) - Constructor for class edu.isi.pegasus.planner.invocation.Descriptor
-
Constructs a file descriptor.
- desET - Variable in class edu.isi.pegasus.planner.provisioner.Node
-
- DEST_ID - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- dest_subnet_id - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- Dest_Subnet_Id - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- determine(Implementation, Job) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.BundleValue
-
Determines the bundle factor for a particular site on the basis of the
stage in bundle value associcated with the underlying transfer
transformation in the transformation catalog.
- determineBuilt() - Method in class edu.isi.pegasus.common.util.Version
-
Determines the built as a time stamp.
- determineChunkFactor() - Method in class edu.isi.pegasus.planner.client.RCClient
-
Sets the chunk factor for chunking up large input files.
- determineClusters(Partition) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
It creates a single clustered job for the partition.
- determineClusters(Partition) - Method in interface edu.isi.pegasus.planner.cluster.Clusterer
-
Determine the clusters for a partition.
- determineClusters(Partition) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Determine the clusters for a partition.
- determineDisabledChmodSites(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Builds up a set of disabled chmod sites
- determineExitStatus(InvocationRecord) - Method in class edu.isi.pegasus.planner.invocation.SimpleServer
-
Determines the exit code of an invocation record.
- determineInputOutputFiles(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Determine the input and output files of the job on the basis of the
order of the constituent jobs in the AggregatedJob.
- determineInputOutputFiles(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.Vertical
-
Determine the input and output files of the job on the basis of the
order of the constituent jobs in the AggregatedJob.
- determineInstalled() - Method in class edu.isi.pegasus.common.util.Version
-
Determines the built and architecture of the installation.
- determinePartitions(Callback) - Method in class edu.isi.pegasus.planner.partitioner.BFS
-
Does a constrained breadth first search to identify the partitions, and
calls out to write out the partition graph.
- determinePartitions(Callback) - Method in class edu.isi.pegasus.planner.partitioner.Label
-
Partitions the graph passed in the constructor, on the basis of the labels
associated with the nodes in the graph.
- determinePartitions(Callback) - Method in class edu.isi.pegasus.planner.partitioner.One2One
-
This ends up writing out a partition for each job in the dax.
- determinePartitions(Callback) - Method in class edu.isi.pegasus.planner.partitioner.Partitioner
-
The main function that ends up traversing the graph structure corrsponding
to the dax and creates the smaller dax files(one dax file per partition)
and the .pdax file that illustrates the partition graph.
- determinePartitions(Callback) - Method in class edu.isi.pegasus.planner.partitioner.Whole
-
This ends up writing out a partition for each job in the dax.
- determinePlatform() - Method in class edu.isi.pegasus.common.util.Version
-
Determines the build platform.
- determineRelativeSubmitDirectory(ADag, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Creates the submit directory for the workflow.
- determineRelativeSubmitDirectory(String, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Creates the submit directory for the workflow.
- determineRootWorkflowUUID(ADag, PlannerOptions, PegasusProperties) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Determines the workflow uuid for a workflow
- determineSites() - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
This is where the callout to the Partitioner should take place, that
partitions the workflow into clusters and sends to the site selector only
those list of jobs that are ready to be scheduled.
- determineSLSInputTransfers(Job, String, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Generates a second level staging file of the input files to the worker
node directory.
- determineSLSInputTransfers(Job, String, String, String, String) - Method in interface edu.isi.pegasus.planner.transfer.SLS
-
Generates a second level staging file of the input files to the worker node
directory.
- determineSLSInputTransfers(Job, String, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Generates a second level staging file of the input files to the worker
node directory.
- determineSLSOutputTransfers(Job, String, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Generates a second level staging file of the input files to the worker
node directory.
- determineSLSOutputTransfers(Job, String, String, String, String) - Method in interface edu.isi.pegasus.planner.transfer.SLS
-
Generates a second level staging file of the input files to the worker node
directory.
- determineSLSOutputTransfers(Job, String, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Generates a second level staging file of the input files to the worker
node directory.
- Diamond() - Static method in class edu.isi.pegasus.planner.dax.ADAG
-
- DIGIT - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
- DIRECTORY_EXTERNAL_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the key that indicates the directory in which the
DAG has to be execute
- DirectoryType - Class in edu.isi.pegasus.planner.catalog.site.classes
-
An abstract base class that creates a directory type.
- DirectoryType() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType
-
The default constructor.
- DirectoryType(List<FileServer>, InternalMountPoint) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType
-
The overloaded constructor
- DISABLE_INVOKE_PROPERTY - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
the name of the property to disable invoke functionality
- disableChmodJobCreation(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Returns a boolean indicating whether to disable chmod job creation for
a site or not.
- disableInvokeInGridStart() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether to disable use of invoke or not.
- displayResults(NamingEnumeration, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
Displays the result on stdout instead of putting it in data classes.
- doAdds() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCAdd
-
- doBackupAndCreateSymbolicLinkForSubmitDirectory(String, String) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
- doDeferredPlanning() - Method in class edu.isi.pegasus.planner.client.CPlanner
-
This ends up invoking the deferred planning code, that generates
the MegaDAG that is used to submit the partitioned daxes in layers.
- doDelete() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCDelete
-
- doesCondorModifications() - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Returns a boolean whether the SLS implementation does a condor based
modification or not.
- doesCondorModifications() - Method in interface edu.isi.pegasus.planner.transfer.SLS
-
Returns a boolean whether the SLS implementation does a condor based
modification or not.
- doesCondorModifications() - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Returns a boolean whether the SLS implementation does a condor based
modification or not.
- doesPreserveXBit() - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Returns a boolean indicating whether the transfer protocol being used by
the implementation preserves the X Bit or not while staging.
- doesPreserveXBit() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Returns a boolean indicating whether the transfer protocol being used by
the implementation preserves the X Bit or not while staging.
- doesPreserveXBit() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
Returns a boolean indicating whether the transfer protocol being used by
the implementation preserves the X Bit or not while staging.
- doesPreserveXBit() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Returns a boolean indicating whether the transfer protocol being used by
the implementation preserves the X Bit or not while staging.
- doesPreserveXBit() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Returns a boolean indicating whether the transfer protocol being used by
the implementation preserves the X Bit or not while staging.
- DOMAIN - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- done(Callback) - Method in class edu.isi.pegasus.planner.partitioner.BFS
-
Indicates that we are done with the partitioning.
- done(Callback) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Indicates that we are done with the traversal of the graph.
- done() - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
Callback signalling that we are done with the parsing of the files.
- done() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Signals that the traversal of the workflow is done.
- done() - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
Prints out the bundles and chains that have been constructed.
- done() - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Signals that the traversal of the workflow is done.
- done() - Method in class edu.isi.pegasus.planner.transfer.refiner.Default
-
Signals that the traversal of the workflow is done.
- done() - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Signals that the traversal of the workflow is done.
- done() - Method in interface edu.isi.pegasus.planner.visualize.Callback
-
Callback signalling that we are done with the parsing of the files.
- done() - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
Callback signalling that we are done with the parsing of the files.
- done() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
Callback signalling that we are done with the parsing of the files.
- doneStageIn(Map<String, Bundle.PoolTransfer>, Implementation, int, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Signals that the traversal of the workflow is done.
- doPartitionAndPlan(PegasusProperties, PlannerOptions) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Partitions and plans the workflow.
- doPartitionAndPlan(String) - Method in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan
-
This function is passed command line arguments.
- doPartitionAndPlan(PegasusProperties, PlannerOptions) - Method in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan
-
Partitions and plans the workflow.
- doQuery() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
- doSet(Level) - Method in class edu.isi.pegasus.planner.client.RCClient
-
- doStatWithKickstart() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Return a boolean indicating whether to turn the stat option for kickstart
on or not.
- downLen - Variable in class edu.isi.pegasus.planner.provisioner.Node
-
- DOWNWARD_RANK - Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The constant to be passed to the accessor functions to get or set the
downward rank for a node.
- DROP_DATABASE_STMT - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
MySQL statement for checking for dropping database
- DSC() - Method in class edu.isi.pegasus.planner.provisioner.Estimator
-
- DUMMY_CONCAT_JOB - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The name concatenating dummy job that ensures that Condor does not start
staging in before the directories are created.
- DUMMY_CONCAT_JOB_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The prefix assigned to the concatenating dummy job that ensures that Condor does not start
staging in before the directories are created.
- DUMMY_NODE_ID - Static variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
The id of the dummy root node added on the top of the graph.
- dvName - Variable in class edu.isi.pegasus.planner.classes.Job
-
The name of the derivation in Chimera that generated the job.
- dvNamespace - Variable in class edu.isi.pegasus.planner.classes.Job
-
The namespace to which the derivation is bound.
- dvVersion - Variable in class edu.isi.pegasus.planner.classes.Job
-
The version of the derivation.
- DynamicLoader - Class in edu.isi.pegasus.common.util
-
This class provides a dynamic class loading facility.
- DynamicLoader(String) - Constructor for class edu.isi.pegasus.common.util.DynamicLoader
-
- gatekeeper - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- Gatekeeper - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- gatekeeper - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- generate(PrintWriter, ADag) - Static method in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
Writes out the classads for a workflow to corresponding writer stream.
- generate(PrintWriter, ADag, Job) - Static method in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
Writes out the classads for a job to corresponding writer stream.
- GENERATE_SUBDAG_KEYWORD - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Whether to generate the SUBDAG keyword or not.
- generateArgumentString(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
It constructs the arguments to the transfer executable that need to be passed
to the executable referred to in this transfer mode.
- generateArgumentString(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
It constructs the arguments to the transfer executable that need to be passed
to the executable referred to in this transfer mode.
- generateArgumentString(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
It constructs the arguments to the transfer executable that need to be passed
to the executable referred to in this transfer mode.
- generateArgumentString(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.TPTGUC
-
It constructs the arguments to the transfer executable that need to be passed
to the executable referred to in this transfer mode.
- generateArgumentString(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
It constructs the arguments to the transfer executable that need to be passed
to the executable referred to in this transfer mode.
- generateArgumentStringAndAssociateCredentials(TransferJob, FileTransfer) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob
-
It constructs the arguments to the transfer executable that need to be passed
to the executable referred to in this transfer mode.
- generateArgumentStringAndAssociateCredentials(TransferJob, FileTransfer) - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
It constructs the arguments to the transfer executable that need to be passed
to the executable referred to in this transfer mode.
- generateCallToCheckExitcode(Job, String) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Generates a call to check_exitcode function that is used
- generateCallToExecuteJob(Job, String, String) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Generates a call to execute_job function , that is used to launch
a job from the shell script.
- generateCallToExecutePostScript(Job, String) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Generates a call to execute_post_script function , that is used to launch
a job from the shell script.
- generateClassAdAttribute(String, String) - Static method in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
Generates a classad attribute given the name and the value.
- generateClassAdAttribute(String, int) - Static method in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
Generates a classad attribute given the name and the value.
- generateClassAdAttribute(String, String, boolean) - Static method in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
Generates a classad attribute given the name and the value.
- generateCleanUPDAG() - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
Generates a cleanup DAG for the dag associated with the class.
- generateCleanUPDAG(ADag) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
Generates a cleanup DAG for the dag object passed.
- generateCleanupID(Job) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Returns the identifier that is to be assigned to cleanup job.
- generateCode(ADag) - Method in interface edu.isi.pegasus.planner.code.CodeGenerator
-
Generates the code for the concrete workflow in the input format of the
workflow executor being used.
- generateCode(ADag, Job) - Method in interface edu.isi.pegasus.planner.code.CodeGenerator
-
Generates the code for a single job in the input format of the workflow
executor being used.
- generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Braindump
-
Generates the code for the executable workflow in terms of a braindump
file that contains workflow metadata useful for monitoring daemons etc.
- generateCode(ADag, Map<String, String>) - Method in class edu.isi.pegasus.planner.code.generator.Braindump
-
Generates the code for the executable workflow in terms of a braindump
file that contains workflow metadata useful for monitoring daemons etc.
- generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Braindump
-
Method not implemented.
- generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Generates the code for the concrete workflow in Condor DAGMAN and CondorG
input format.
- generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Generates the code (condor submit file) for a single job.
- generateCode(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Generates code for a job
- generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
Generates the notifications input file.
- generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
Not implemented
- generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Metrics
-
Generates the code for the executable workflow in terms of a braindump
file that contains workflow metadata useful for monitoring daemons etc.
- generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Metrics
-
Method not implemented.
- generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
Generates the notifications input file.
- generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
Not implemented
- generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Generates the code for the concrete workflow in the GRMS input format.
- generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Generates the code for a single job in the input format of the workflow
executor being used.
- generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Stampede
-
Generates the code for the executable workflow in terms of a braindump
file that contains workflow metadata useful for monitoring daemons etc.
- generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Stampede
-
Method not implemented.
- generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Stork
-
Generates the code for the concrete workflow in the input format of the
workflow executor being used.
- generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Stork
-
Generates the code for a single job in the Stork format.
- generateEventsForDAXTask(PrintWriter, ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Stampede
-
Generates stampede events corresponding to jobs/tasks in the DAX
- generateEventsForExecutableJob(PrintWriter, ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Stampede
-
Generates stampede events corresponding to an executable job
- generateFlowID() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Generates the flow id for this current run.
- generateFlowName() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Generates the name of the flow.
- generateKickstartExtraOptions() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whehter to pass extra options to kickstart
or not.
- generateList(String) - Method in class edu.isi.pegasus.planner.client.RankDAX
-
Generates a List by parsing a comma separated string.
- generateListofFilenamesFile(Set, String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Writes out the list of filenames file for the constituentJob.
- generateListofFilenamesFile(Set, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Writes out the list of filenames file for the job.
- generateListofFilenamesFile(Set, String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Writes out the list of filenames file for the job.
- generateLOFFiles() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Return a boolean indicating whether to generate the LOF files for the jobs
or not.
- generateLogEvent(Job, String) - Method in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper
-
Generates a log event message in the netlogger format for a job
- generateLogFileSymlink(String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
This method generates a symlink to the actual log file written in the
local temp directory.
- generateMappingsFile(String, Collection) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Generates the registration mappings in a text file that is generated in the
dax directory (the directory where all the condor submit files are
generated).
- generateMask(int, boolean) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Generates the appropriate mask value, corresponding to the level
passed.
- generateName(String) - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Generates a name for the job that serves as the primary id for the job
- generateName(String) - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Generates a name for the job that serves as the primary id for the job
- generateRandomDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns whether to generate a random directory or not.
- generateRandomDirectory() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Returns whether we want to create
a Random Directory or not.
- generateRepJobArgumentString(SiteCatalogEntry, String, Collection) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Generates the argument string to be given to the replica registration job.
- generateScriptFile(String, String, String, float, float) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus
-
Generates the script file required to give as input to ploticus.
- generateScriptFile(String, String, String, float, float) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus
-
Generates the script file required to give as input to ploticus.
- generateSet(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Generates a Set by parsing a comma separated string.
- generateSRMProperties() - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
Generates SRM properties that can be used by Pegasus to do SRM URL
substitution for the case where all the data is accessible on the
worker nodes locally.
- generateSRMProperties(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
Generates SRM properties that can be used by Pegasus to do SRM URL
substitution for the case where all the data is accessible on the
worker nodes locally for a particular site.
- generateStampedeEventsForAbstractWorkflow(ADag, PegasusBag) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Generates events for the abstract workflow.
- generateTaskMapEvents(PrintWriter, ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Stampede
-
Generates the task.map events that link the jobs in the DAX with the
jobs in the executable workflow
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Tt generates the LongOpt which contain the valid options that the command
will accept.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.Executable
-
Generates an array of valid LongOpt
objects which contain
all the valid options to the Executable.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.ExitCode
-
Creates a set of options.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.NetloggerExitcode
-
Tt generates the LongOpt which contain the valid options that the command
will accept.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.PartitionDAX
-
Tt generates the LongOpt which contain the valid options that the command
will accept.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.PegasusGetSites
-
Generates valid LongOpts.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.PlotNodeUsage
-
Tt generates the LongOpt which contain the valid options that the command
will accept.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.PlotSpaceUsage
-
Tt generates the LongOpt which contain the valid options that the command
will accept.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.RankDAX
-
It generates the LongOpt which contain the valid options that the command
will accept.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.RCClient
-
Creates a set of GNU long options.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.SCClient
-
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.TCClient
-
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Generates the list of valid options for the tc-converter client
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Tt generates the LongOpt which contain the valid options that the command
will accept.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.VersionNumber
-
Creates a set of options.
- generateWorkflowUUID() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Generates the UUID for the workflow
- GENERATOR - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The name of the generator.
- GENERATOR_AD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The complete classad designating Pegasus as the generator.
- GENERATOR_TYPE_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The Key designating type of Pegasus Code Generator.
- get(CredentialHandler.TYPE) - Method in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
Returns the implementation from the implementing class table.
- get(Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the namespace object corresponding to a namespace
- get(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
Retrives the information about a site.
- get(Object) - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
Returns an objects corresponding to the key passed.
- get(String) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns an entry corresponding to the LFN
- get(String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
Returns the implementation from the implementing class table.
- get(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
Returns the implementation from the implementing class table.
- get(String) - Method in class edu.isi.pegasus.planner.invocation.Environment
-
Retrieves the value for a given key
- get(String) - Method in class edu.isi.pegasus.planner.invocation.MachineInfo
-
Returns attribute value for a key
- get(Object) - Method in class edu.isi.pegasus.planner.namespace.ENV
-
Returns the value to which this namespace maps the specified key.
- get(Object) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Returns the value to which this namespace maps the specified key.
- get(Object) - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Returns the value to which this namespace maps the specified key.
- get(Object) - Method in class edu.isi.pegasus.planner.namespace.Selector
-
Returns the value to which this namespace maps the specified key.
- get(Object) - Method in class edu.isi.pegasus.planner.namespace.Stat
-
Returns the value to which this namespace maps the specified key.
- get(Object) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
It returns the value associated with the key in the map.
- get(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Returns the GraphNode
of the corresponding id.
- get(Object) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Bag
-
Returns an objects corresponding to the key passed.
- get(Object) - Method in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
-
Returns an objects corresponding to the key passed.
- get(Object) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
It returns the value associated with the key in the map.
- get(String, String) - Method in class edu.isi.pegasus.planner.ranking.GetDAX
-
Given a request ID it fetches the DAX's from the DB and writes out to
the directory passed.
- get(Object) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag
-
For all keys returns the boolean value
- get(Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
Returns an objects corresponding to the key passed.
- get(String) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
Returns the TPT state for a particular site.
- get(int) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
Returns a boolean indicating whether the attribute passed is set
in the transfer state or not.
- get(String) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Returns the TPT state for a particular site.
- get(int) - Method in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
Returns a boolean indicating whether the attribute passed is set
in the transfer state or not.
- GET_ENV_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The condor key for using the local environment
- get_sites_in_grid(String, String, String, String) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil
-
- get_sites_info(String, String, String, String, String) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil
-
- getAbsolutePath(String) - Static method in class edu.isi.pegasus.planner.common.Utility
-
It returns the absolute path of the url.
- getAbsolutePath(Partition, String, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the absolute path to a dagman (usually) related file for a
particular partition in the submit directory that is passed as an input
parameter.
- getAbstractChildID() - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Returns the abstract child id associated with the edge.
- getAbstractJob(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Returns an abstract Job with id ajobid if present otherwise null.
- getAbstractParentID() - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Returns the abstract parent id associated with the edge.
- getAbstractWorkflowName() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the workflow id
- getAccessTime() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getAdditionalBraindumpEntries(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Returns a Map containing additional metrics entries that are specific
to a Code Generator
- getAdditionalBraindumpEntries(ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns a Map containing additional braindump entries that are specific
to a Code Generator.
- getAdditionalBraindumpEntries(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Returns a Map containing additional braindump entries that are specific
to a Code Generator
- getAdditionalBraindumpEntries(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Stork
-
Returns an empty map
- getAliasIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Returns an iterator to aliases associated with the site.
- getAllEntries() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Returns all the entries in the Transformation Store
- getAllIgnoredSites() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a comma separated list of sites, from which to ignore data
transfers for all sites.
- getAllPreferredSites() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a comma separated list of sites, from which to prefer data
transfers for all sites.
- getAncET() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
- getAncSize() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
- getApp_loc() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getApp_loc() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getApp_space() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getApp_space() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getArch() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Returns the architecture of the sytem.
- getArchitecture() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Returns the architecture of the site.
- getArchitecture() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the architecture of the nodes that this grid gateway talks to.
- getArchitecture() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the architecture of the site.
- getArchitecture() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Get the architecture the Executable is compiled for
- getArchitecture() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getArchMode() - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor
- getArguments() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the argument string with which the job has to be invoked.
- getArguments() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Return the argument List.
- getArguments() - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor
- getAssociatedJob() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
Returns the associated job.
- getAttribute(String) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Obtains the attribute value for a given key.
- getAttributeCount() - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Counts the number of attributes known for the PFN.
- getAttributeIterator() - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Provides an iterator to traverse the attributes by their keys.
- getAttributeKeysIterator() - Method in class edu.isi.pegasus.planner.invocation.MachineInfo
-
Returns Iterator for attribute keys.
- getAvailableProcessors() - Method in class edu.isi.pegasus.planner.selector.site.heft.Site
-
Returns the number of available processors.
- getAvailableTime(String, long) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Returns the available time for a site.
- getAvailableTime(long) - Method in class edu.isi.pegasus.planner.selector.site.heft.Processor
-
Returns the earliest time the processor is available for scheduling
a job.
- getAvailableTime(long) - Method in class edu.isi.pegasus.planner.selector.site.heft.Site
-
Returns the earliest time the site is available for scheduling
a job.
- getBag() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns the bag of objects associated with the node.
- getBaseName() - Method in interface edu.isi.pegasus.common.credential.CredentialHandler
-
returns the basename of the credential file name
- getBaseName() - Method in class edu.isi.pegasus.common.credential.impl.Irods
-
returns the basename of the path to the local credential
- getBaseName() - Method in class edu.isi.pegasus.common.credential.impl.Proxy
-
returns the basename of the path to the local credential
- getBaseName() - Method in class edu.isi.pegasus.common.credential.impl.S3CFG
-
returns the basename of the path to the local credential
- getBaseName() - Method in class edu.isi.pegasus.common.credential.impl.Ssh
-
returns the basename of the path to the local credential
- getBasename(String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
A covenience method to construct the basename.
- getBasename(String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Returns the basename of a dagman (usually) related file for a particular
partition.
- getBaseName(Partition) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the base name of the submit directory in which the submit files
for a particular partition reside.
- getBasename(Partition, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the basename of a dagman (usually) related file for a particular
partition.
- getBasename(String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Returns the basename of the URL using substring.
- getBasenamePrefix() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the basename prefix for the per workflow files that are to be
generated by the planner.
- getBasenamePrefix(Job) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the basename prefix of a dagman (usually) related file for a
a job that submits nested dagman.
- getBaseSourceURLForSetupTransfers() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the base source URL where pointing to the directory where the
worker package executables for pegasus releases are kept.
- getBaseSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the root of submit directory hierarchy for the workflow.
- getBaseSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the path to the base submit directory.
- getBaseSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the base submit directory
- getBinDir() - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Accessor pegasus bin directory
- getBinDir() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Accessor to the bin directory of the Pegasus install
- getBinPackingComparator() - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
The comparator is used to sort a collection of jobs in decreasing order
of their run times as specified by the Pegasus.JOB_RUN_TIME property.
- getBlocks() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getBlockSize() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getBooleanValue(Object) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Returns a boolean value, that a particular key is mapped to in this
namespace.
- getBooleanValue(Object) - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Returns a boolean value, that a particular key is mapped to in this
namespace.
- getBooleanValue() - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag
-
Returns the boolean value
- getCacheFileName(PlannerOptions, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Constructs the basename to the cache file that is to be used
to log the transient files.
- getCacheFileName(ADag) - Method in class edu.isi.pegasus.planner.refiner.MainEngine
-
Constructs the basename to the cache file that is to be used
to log the transient files.
- getCacheFilePath(Job) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the full path to a cache file that corresponds for one partition.
- getCacheFiles() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the cache files.
- getCacheFiles() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
It returns the set of cache files.
- getCategoryDAGManKnobs(PegasusProperties) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Write out the DAGMan knobs for each category the user mentions in
the properties.
- getCE(List<MYOSGSiteServiceInfo>) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
Returns the compute element(CE)
- getCERequirementsForJob(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.GLite
-
Constructs the value for remote CE requirements expression for the job .
- getChild() - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Returns the child in the edge.
- getChildren(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Get all the children of a particular node.
- getChildren(String) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Get all the children of a particular node.
- getChildren() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns a list of GraphNode
objects that are children of the
node.
- getChildren(String) - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
Gets all the children of a particular node.
- getChmodDisabledSites() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the list of sites for which the chmod job creation has to be
disabled for executable staging.
- getClassName() - Method in class edu.isi.pegasus.common.util.DynamicLoader
-
Obtains the fully-qualified class name that this instance works with.
- getClassname() - Method in exception edu.isi.pegasus.common.util.FactoryException
-
Returns the name of the class that was trying to be loaded when this
error occured, or some other signifier like a module name.
- getClassPath(String) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Returns the classpath for the default rc-client entry.
- getCleanup() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the option indicating whether to do cleanup or not.
- getCleanupDAG() - Method in class edu.isi.pegasus.planner.refiner.MainEngine
-
Returns the cleanup dag for the concrete dag.
- getCleanupFlag() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
Returns boolean indicating whether the space denoted is the amount cleaned
or not.
- getCleanupImplementation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the name of the class that the user wants, to render the cleanup
jobs.
- getCleanupJobname(ADag, String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
It returns the name of the untar job, that is to be assigned.
- getCleanupScope() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the scope for file cleanup.
- getCleanupStrategy() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the name of the Strategy class that the user wants, to insert the
cleanup jobs in the graph.
- getClusteredDAG() - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Returns the clustered workflow.
- getClusteredDAG() - Method in interface edu.isi.pegasus.planner.cluster.Clusterer
-
Returns the clustered workflow.
- getClusteredDAG() - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Returns the clustered workflow.
- getClustererLabelKey() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the key that is to be used as a label key, for labelled
clustering.
- getClusterExecutableBasename() - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Returns the executable basename of the clustering executable used.
- getClusterExecutableBasename() - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Returns the executable basename of the clustering executable used.
- getClusterExecutableBasename() - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator
-
Returns the executable basename of the clustering executable used.
- getClusterExecutableLFN() - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Returns the logical name of the transformation that is used to
collapse the jobs.
- getClusterExecutableLFN() - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Returns the logical name of the transformation that is used to
collapse the jobs.
- getClusterExecutableLFN() - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator
-
Returns the logical name of the transformation that is used to
collapse the jobs.
- getClusteringTechnique() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the clustering technique to be used for clustering.
- getCollapseFactor(String, Job, int) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Returns the collapse factor, that is used to chunk up the jobs of a
particular type on a pool.
- getCollapseFactor(String, int) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Returns the collapse factor, that is used to determine the number of nodes
going in a partition.
- getCollapseFactors() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a comma separated list for the node collapsing criteria for the
execution pools.
- getCommandLineOptions() - Method in class edu.isi.pegasus.planner.client.Executable
-
Returns the command line arguments passed to the executable
- getCommandLineProperties(PegasusProperties) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Returns the properties that need to be passed to the the rc-client
invocation on the command line .
- getCommentString(Job, int) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Generates the comment string for the job .
- getCompleteDVName() - Method in class edu.isi.pegasus.planner.classes.Job
-
Constructs the fully qualified name of the corresponding derivation used
to generate this job in Chimera including the namespace and version.
- getCompleteName() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Returns the complete name for the transformation.
- getCompleteOptions() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the complete options string that is used to invoke pegasus
- getCompleteTCName() - Method in class edu.isi.pegasus.planner.classes.Job
-
Constructs the fully qualified name of a transformation with
which to query the TC, including the namespace and version.
- getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
Returns the complete name for the transformation that the implementation
is using..
- getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob
-
Returns the complete name for the transformation that the implementation
is using.
- getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Returns the complete name for the transformation.
- getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
Returns the complete name for the transformation.
- getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Returns the complete name for the transformation.
- getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Returns the complete name for the transformation.
- getCompleteTranformationName(String) - Static method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
A convenience method to return the complete transformation name being
used to construct jobs in this class.
- getCompleteTranformationName() - Static method in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
A convenience method to return the complete transformation name being
used to construct jobs in this class.
- getCompleteTranformationName() - Static method in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
A convenience method to return the complete transformation name being
used to construct jobs in this class.
- getComputeJobBundleValue(Job) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Returns the bundle value associated with a compute job as a String.
- getComputeJobBundleValue(Job) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Returns the bundle value associated with a compute job as a String.
- getConcatJobname(ADag) - Method in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
Returns the name of the concat job
- getCondorFileName(String, int, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
A small utility method that constructs the name of the Condor files
that are generated when a dag is submitted.
- getCondorFileName(String, int, String, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
A small utility method that constructs the name of the Condor files
that are generated when a dag is submitted.
- getCondorLogInSubmitDirectory() - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns the path to the condor log file in the submit directory.
- getCondorLogInSubmitDirectory(ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns the path to the condor log file in the submit directory.
- getCondorLogInTmpDirectory() - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns the name of Condor log file in a tmp directory that is created
if generation of symlink for condor logs is turned on.
- getConfigurableParameters(Properties) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGURLGenerator
-
Parsers through the list of parameterID-value pair and returns the
parameters name value pair
- getConfigurationProperties(String) - Method in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
Returns Properties corresponding to a particular configuration.
- getConnectionIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Returns an iterator to connection params associated with the replica
catalog.
- getConstituentJob(int) - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns a job from a particular position in the list of constituent jobs
- getConstructedObject() - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Return a object that is constructed during the parsing of the object.
- getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Returns an ADag object corresponding to the abstract plan it has generated.
- getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
Returns a Map indexed by the logical ID of the jobs, and each value being
a GraphNode object.
- getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Returns an ADag object corresponding to the abstract plan it has generated.
- getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Returns the workflow represented in the Graph
form.
- getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Returns an ADag object corresponding to the abstract plan it has generated.
- getConstructedObject() - Method in interface edu.isi.pegasus.planner.parser.pdax.Callback
-
Return a object that is constructed during the parsing of the object.
- getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the MEGADAG that is generated
- getConstructedObject() - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
Returns a List of Map objects where each map captures information in one
invocation record.
- getConstructedObject() - Method in interface edu.isi.pegasus.planner.visualize.Callback
-
Returns the object constructed.
- getConstructedObject() - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
Returns the SpaceUsage store built.
- getConstructedObject() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
Returns the SpaceUsage store built.
- getContact() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the contact string for the Grid gateway
- getContent() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns the content associated with the node.
- getContents() - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM.ListCallback
-
Returns the contents captured.
- getContents() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
List all the contents of the TC
- getContents() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
List all the contents of the TC
- getContents() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
List all the contents of the TC
- getContents() - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
List all the contents of the TC
- getCoreFlag() - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Accessor
- getCost(long, long) - Method in class edu.isi.pegasus.planner.provisioner.Edge
-
- getCost() - Method in class edu.isi.pegasus.planner.provisioner.Edge
-
- getCount() - Method in class edu.isi.pegasus.planner.invocation.Fifo
-
Accessor
- getCount() - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback
-
Returns the number of words counted so far.
- getCreateDirClass() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the name of the class that the user wants, to insert the
create directory jobs in the graph in case of creating random
directories.
- getCreateDirImplementation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the name of the class that the user wants, to render the directory
creation jobs.
- getCreateDirJobExecutionSite(String, String) - Method in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
Determines the site where the create dir job should be run , looking at the
directory URL passed.
- getCreateDirJobName(ADag, String) - Method in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
It returns the name of the create directory job, that is to be assigned.
- getCreateDirSites(ADag) - Method in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
Retrieves the sites for which the create dir jobs need to be created.
- getCreateDirSites(ADag) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
Retrieves the sites for which the create dir jobs need to be created.
- getCreationTime() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getCredentialTypes() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the various credential types required by a job
- getCredName() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the credential name to be used for the stork transfer jobs.
- getCurrentNumOfJobs(String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
Returns the number of jobs that are executing for a particular site
- getDAG(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Returns a DAG object with id dagid if present otherwise null.
- getDAGFile() - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Returns the DAGFile the job refers to.
- getDAGFilename(ADag, PlannerOptions) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Returns the basename of the dag file
- getDAGFilename(ADag, String) - Method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Returns the name of the file on the basis of the metadata associated
with the DAG.
- getDAGFilename(PlannerOptions, String, String, String) - Static method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Returns the name of the file on the basis of the metadata associated
with the DAG.
- getDAGLFN() - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Returns the lfn for the DAGFile the job refers to.
- getDAGMANOutFilename(ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns the basename of the file, that contains the output of the
dagman while running the dag generated for the workflow.
- getData() - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor
- getData_loc() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getData_loc() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getData_space() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getData_space() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getDatabaseName(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Returns the database name from the database url string
- getDate() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
Returns the time at which Space was record.
- getDateAfter(int) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
-
Returns the date after n days formatted as MM/dd/yyyy.
- getDateFormat() - Method in class edu.isi.pegasus.common.util.Currently
-
Accessor: Obtains the default timestamp format for all queues.
- getDateTime(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the time at which planning started in a ISO 8601 format.
- getDAX() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the path to the DAX.
- getDAX() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the path to the dax file being used by the planner.
- getDAX(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Returns a DAX object with id daxid if present otherwise null.
- GetDAX - Class in edu.isi.pegasus.planner.ranking
-
This class is responsible for the fetching the DAX'es on the basis of the
request ID's from the Windward Provenance Tracking Catalog.
- GetDAX() - Constructor for class edu.isi.pegasus.planner.ranking.GetDAX
-
The default constructor.
- getDAXCallback() - Method in interface edu.isi.pegasus.planner.parser.dax.DAXParser
-
Retuns the DAXCallback for the parser
- getDAXCallback() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Retuns the DAXCallback for the parser
- getDAXCallback() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Retuns the DAXCallback for the parser
- getDAXFile() - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Returns the DAXFile the job refers to.
- getDaxFile() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Returns the dax file, that
was generated by Chimera
containing the description of
the Abstract plan.
- getDAXID() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Clustered jobs never originate in the DAX.
- getDAXID() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the DAX ID for the job if it appeared in the DAX, else null
- getDAXLFN() - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Returns the lfn for the DAXFile the job refers to.
- getDAXMetadata(PegasusBag, String) - Static method in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
Returns the metadata stored in the root adag element in the DAX
- getDAXReplicaStoreFile(PlannerOptions, String, String) - Static method in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
Returns the path to the DAX Replica Store File.
- getDAXSchemaLocation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the location of the schema for the DAX.
- getDAXSchemaLocation(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the location of the schema for the DAX.
- getDAXVersion() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the dax version
- getDAXVersion() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the dax version
- getDefaultBundleValueFromProperties(String, String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Returns the default value for the clustering/bundling of jobs to be used.
- getDefaultExitCodePath() - Method in class edu.isi.pegasus.planner.code.gridstart.ExitCode
-
Returns the path to exitcode that is to be used on the kickstart
output.
- getDefaultExitCodePath() - Method in class edu.isi.pegasus.planner.code.gridstart.ExitPOST
-
Returns the path to exitcode that is to be used on the kickstart
output.
- getDefaultExitCodePath() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
Returns the path to exitcode that is to be used on the kickstart
output.
- getDefaultExitCodePath() - Method in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript
-
Returns the path to exitcode that is to be used on the kickstart
output.
- getDefaultPathToCondorKickstart() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the default path to the condor kickstart.
- getDefaultPathToSC() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the default path to the site catalog file.
- getDefaultPathToTC() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the default path to the transformation catalog.
- getDefaultRegistrationMaxJobsPropertyKey() - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Returns the property key that can be used to set the max jobs for the
default category associated with the registration jobs.
- getDefaultThirdPartySites() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the default list of third party sites.
- getDefaultTransferImplementation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the default transfer implementation to be picked up for
constructing transfer jobs.
- getDefaultTransferPriority() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the default priority for the transfer jobs if specified in
the properties file.
- getDeletedFileTX(String, Job) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
This gets the file transfer objects corresponding to the location of files
found in the replica mechanism, and transfers it to the output pool asked
by the user.
- getDeletedJobs() - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
This returns all the jobs deleted from the workflow after the reduction
algorithm has run.
- getDeletedJobs() - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
This returns all the jobs deleted from the workflow after the reduction
algorithm has run.
- getDeletedLeafJobs() - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
This returns all the deleted jobs that happen to be leaf nodes.
- getDeletedLeafJobs() - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
This returns all the deleted jobs that happen to be leaf nodes.
- getDependantFiles() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Returns the List of dependant files
- getDepET() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
- getDeployJobName(ADag, String, boolean) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
It returns the name of the deployment job, that is to be assigned.
- getDeploymentSites(ADag) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Retrieves the sites for which the deployment jobs need to be created.
- getDepSize() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
- getDepth() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.AbstractSiteCatalogResource
-
- getDepth() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns the depth of the node in the graph.
- getDerivation() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
Returns the logical name of the derivation that this implementation
refers to.
- getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob
-
Returns the logical name of the derivation that this implementation
refers to.
- getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Returns the logical name of the derivation that this implementation
refers to.
- getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
Returns the logical name of the derivation that this implementation
refers to.
- getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Returns the logical name of the derivation that this implementation
refers to.
- getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Returns the logical name of the derivation that this implementation
refers to.
- getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
Returns the namespace of the derivation that this implementation
refers to.
- getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob
-
Returns the namespace of the derivation that this implementation
refers to.
- getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Returns the namespace of the derivation that this implementation
refers to.
- getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
Returns the namespace of the derivation that this implementation
refers to.
- getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Returns the namespace of the derivation that this implementation
refers to.
- getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Returns the namespace of the derivation that this implementation
refers to.
- getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
Returns the version of the derivation that this implementation
refers to.
- getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob
-
Returns the version of the derivation that this implementation
refers to.
- getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Returns the version of the derivation that this implementation
refers to.
- getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
Returns the version of the derivation that this implementation
refers to.
- getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Returns the version of the derivation that this implementation
refers to.
- getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Returns the version of the derivation that this implementation
refers to.
- getDescription() - Method in interface edu.isi.pegasus.common.credential.CredentialHandler
-
Returns the description for the implementing handler
- getDescription() - Method in class edu.isi.pegasus.common.credential.impl.Irods
-
Returns the description for the implementing handler
- getDescription() - Method in class edu.isi.pegasus.common.credential.impl.Proxy
-
Returns the description for the implementing handler
- getDescription() - Method in class edu.isi.pegasus.common.credential.impl.S3CFG
-
Returns the description for the implementing handler
- getDescription() - Method in class edu.isi.pegasus.common.credential.impl.Ssh
-
Returns the description for the implementing handler
- getDescription() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Returns the TC implementation being used
- getDescription() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Returns a textual description of the transformation mode.
- getDescription() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Returns a textual description of the transformation mode.
- getDescription() - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Returns the TC implementation being used
- getDescription() - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Returns a textual description of the transfer implementation.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Returns a textual description of the transfer implementation.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
Returns a textual description of the transfer implementation.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Returns a textual description of the transfer implementation.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Returns a textual description of the transfer implementation.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Returns a textual description of the transfer mode.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
Returns a textual description of the transfer mode.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Returns a textual description of the transfer mode.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.refiner.Default
-
Returns a textual description of the transfer mode.
- getDescription() - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Returns a textual description of the transfer mode.
- getDescriptor() - Method in class edu.isi.pegasus.planner.invocation.Descriptor
-
Accessor
- getDescriptor() - Method in interface edu.isi.pegasus.planner.invocation.HasDescriptor
-
Accessor: Obtains the descriptor of the file handle
- getDescriptor() - Method in class edu.isi.pegasus.planner.invocation.Temporary
-
Accessor
- getDesET() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
- getDesSize() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
- getDestURL() - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Returns a single destination url associated with the transfer.
- getDestURL(boolean) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Returns a single destination url associated with the transfer.
- getDirectory() - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Returns the directory the job refers to.
- getDirectory() - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Returns the directory the job refers to.
- getDirectory() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the directory where the job runs.
- getDirectory(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Returns the directory in which the job should run.
- getDirectory(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Returns the directory in which the job should run.
- getDirectoryKey(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Returns the exectionSiteDirectory that is associated with the constituentJob to specify
the exectionSiteDirectory in which the constituentJob needs to run
- getDirectoryKey(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Returns the directory that is associated with the job to specify
the directory in which the job needs to run
- getDirectoryKey(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Returns the directory that is associated with the job to specify
the directory in which the job needs to run
- getDomainName() - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor
- getDOTColor() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the color with which DOT should color the node representing the
job.
- getDownLen() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
return the DnLength of this task.
- getDuration() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getDuration() - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor
- getDVName() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the name of the underlying derivation.
- getDVNamespace() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the namespace of the underlying derivation.
- getDVVersion() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the version of the underlying derivation.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.Boot
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.CPU
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.Load
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.MachineInfo
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.Proc
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.RAM
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.Stamp
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.Swap
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.Task
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.Uname
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.parser.ParserStackElement
-
Returns the element name.
- getElementObject() - Method in class edu.isi.pegasus.planner.parser.ParserStackElement
-
Returns the object referred to by the element.
- getEndEventMessage() - Method in interface edu.isi.pegasus.common.logging.Event
-
Creates the end message for the event.
- getEndEventMessage() - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Creates the end message for the event on top of the stack.
- getEndEventMessage() - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Creates the end message for the event.
- getEndEventMessage() - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Creates the end message for the event.
- getEndEventMessage() - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Creates the end message for the event on top of the stack.
- getEndTime() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the end time for the planning operation.
- getEntries(String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Returns List of TransformationCatalogEntry objects for a transformation
on a particular site and a type.
- getEntries(String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Returns List of TransformationCatalogEntry objects for a transformation
on a particular site.
- getEntries(String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Returns a list of TransformationCatalogEntry objects matching on a site and
transformation type.
- getEnvArrFromMap() - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
Generates an array of environment variables.
- getEnvironment() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getEnvironmentVariable() - Method in interface edu.isi.pegasus.common.credential.CredentialHandler
-
Returns the name of the environment variable that needs to be set
for the job associated with the credential.
- getEnvironmentVariable() - Method in class edu.isi.pegasus.common.credential.impl.Irods
-
Returns the name of the environment variable that needs to be set
for the job associated with the credential.
- getEnvironmentVariable() - Method in class edu.isi.pegasus.common.credential.impl.Proxy
-
Returns the name of the environment variable that needs to be set
for the job associated with the credential.
- getEnvironmentVariable() - Method in class edu.isi.pegasus.common.credential.impl.S3CFG
-
Returns the name of the environment variable that needs to be set
for the job associated with the credential.
- getEnvironmentVariable() - Method in class edu.isi.pegasus.common.credential.impl.Ssh
-
Returns the name of the environment variable that needs to be set
for the job associated with the credential.
- getEnvironmentVariable(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns an environment variable associated with the site.
- getEnvironmentVariable(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Returns an environment variable associated with the site.
- getEnvironmentVariable(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Returns an environment variable for a particular site set in the
Site Catalog.
- getEnvironmentVariables(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
Returns the environment profiles that are required for the default
entry to sensibly work.
- getEnvironmentVariables(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Returns the environment profiles that are required for the default
entry to sensibly work.
- getEnvironmentVariables(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Returns the environment profiles that are required for the default
entry to sensibly work.
- getEnvironmentVariables(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Returns the environment profiles that are required for the default
entry to sensibly work.
- getEnvironmentVariables(String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Returns the environment profiles that are required for the default
entry to sensibly work.
- getEnvValue(String) - Method in class edu.isi.pegasus.planner.client.Executable
-
Get the value of the environment variable.
- getError() - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Accessor
- getError() - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor
- getEventName() - Method in interface edu.isi.pegasus.common.logging.Event
-
Returns the name of event that is currently associated with the log messages.
- getEventName() - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Returns the name of event that is currently associated with the log messages
and is on the top of the stack
- getEventName() - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Returns the name of event that is currently associated with the log messages.
- getEventName() - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Returns the name of event that is currently associated with the log messages.
- getEventName() - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Returns the name of event that is currently associated with the log messages
and is on the top of the stack
- getEventType(String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
Returns the event type matching a particular job type
- getEventType(String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd
-
Returns the event type matching a particular job type
- getEventTypeForHeader(String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
Returns the event type matching a header.
- getExec_jm() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getExec_jm() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getExecDirectory() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the execution directory suffix or absolute specified
that is appended/replaced to the exec-mount-point specified in the
pool catalog for the various pools.
- getExecMountPoint() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
A helper method that returns the execution mount point.
- getExecPoolWorkDir(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
This determines the working directory on remote execution pool on the
basis of whether an absolute path is specified in the pegasus.dir.exec directory
or a relative path.
- getExecPoolWorkDir(Job) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
This determines the working directory on remote execution pool for a
particular job.
- getExecPoolWorkDir(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
This determines the working directory on remote execution pool on the
basis of whether an absolute path is specified in the pegasus.dir.exec
directory or a relative path.
- getExecPoolWorkDir(String, String, int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
This determines the working directory on remote execution pool on the
basis of whether an absolute path is specified in the pegasus.dir.exec directory
or a relative path.
- getExecutable() - Method in class edu.isi.pegasus.planner.dax.File
-
Check if the file is an executable
- getExecutable() - Method in class edu.isi.pegasus.planner.invocation.Arguments
-
Accessor
- getExecutable() - Method in class edu.isi.pegasus.planner.invocation.CommandLine
-
Accessor
- getExecutable() - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor
- getExecutableBasename() - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Return the executable basename for transfer executable used.
- getExecutableWorkflowName() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the workflow id
- getExecutionDirectory(Job) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Returns the directory in which a job should be executed.
- getExecutionSites() - Method in class edu.isi.pegasus.planner.classes.ADag
-
It returns the a unique list of the execution sites that the Planner
has mapped the dax to so far in it's stage of planning .
- getExecutionSites() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the names of the execution sites where the concrete workflow can
be run.
- getExecutionSites() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Returns the list of execution pools
where the user wants the data
products to be computed.
- getExitCode() - Method in class edu.isi.pegasus.planner.invocation.JobStatusRegular
-
Accessor
- getExitCodePath() - Method in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
-
Returns the path to exitcode that is to be used on the kickstart
output.
- getExpectedRuntime(Job, TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Return expected runtime.
- getExpectedRuntimeFromAC(Job, TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Return expected runtime from the AC only if the process catalog is
initialized.
- getExternalStorageDirectory(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Return the storage mount point for a particular pool.
- getExternalWorkDirectory(FileServer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Return the work directory as seen externally (including external mount point)
- getExternalWorkDirectoryURL(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Returns a URL to the work directory as seen externally ( including external
mount point ).
- getFile() - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor
- getFileBaseName(Job) - Method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Returns the basename of the file to which the job is written to.
- getFileBaseName(Job) - Method in class edu.isi.pegasus.planner.code.generator.Stork
-
Returns the basename of the file to which the job is written to.
- getFileLocs(String) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Returns all the locations as returned from the Replica Lookup Mechanism.
- getFilename() - Method in interface edu.isi.pegasus.planner.invocation.HasFilename
-
Accessor: Obtains the name of the file
- getFilename() - Method in class edu.isi.pegasus.planner.invocation.Regular
-
Accessor
- getFilename() - Method in class edu.isi.pegasus.planner.invocation.Temporary
-
Accessor
- getFilename(String, String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus
-
Returns the filename of the ploticus file to be generated.
- getFilename(String, String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus
-
Returns the filename of the ploticus file to be generated.
- getFileServerIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Not implmented as yet.
- getFileServers() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Not implemented as yet.
- getFileServersIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType
-
Returns at iterator to the file servers.
- getFilesFromRC(DAGJob, Collection) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Special Handling for a DAGJob for retrieving files from the Replica Catalog.
- getFilesFromRC(DAXJob, Collection) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Special Handling for a DAXJob for retrieving files from the Replica Catalog.
- getFilesFromRC(Job, Collection) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
It looks up the RCEngine Hashtable to lookup the locations for the
files and add nodes to transfer them.
- getFilesInReplica() - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
This returns the files for which mappings exist in the Replica Catalog.
- getFileTransfers() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Returns the collection of transfers associated with this transfer
container.
- getFileTX(String, Job, boolean) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
This gets the Vector of FileTransfer objects for the files which have to
be transferred to an one destination pool.
- getFlags() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the bit fields that contain the transient flags (dR and optional).
- getFloatValue(Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
A convenience method to get the intValue for the object passed.
- getFlowTimestamp() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the flow timestamp for the workflow.
- getForce() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the force option set for the planner.
- getForceOption() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Returns true if the user had asked
for the force option.
- getForceReplan() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the force replan option
- getForwardOptions() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the forward options set
- getFreeNodesForSite(String) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Returns the freenodes for a site.
- getFreeSize() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
Sets the free directory size
- getFrom() - Method in class edu.isi.pegasus.planner.provisioner.Edge
-
return the 'from' task
- getGatekeeper() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getGatekeeper() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- getGatekeeper() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getGID() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getGID() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getGk_port() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getGk_port() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getGlibc() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Returns the glibc version of the site.
- getGlibc() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the glibc version of the site.
- getGlibc() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the glibc version of the site.
- getGlibc() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Retuns the glibc version of the system.
- getGlibc() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Get the Glibc version if any set for this file.
- getGlobus_loc() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getGlobus_loc() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getGlobusVersion(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
Returns the version corresponding to a particular version type.
- getGlobusVersion() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
Returns the Globus version as a dot separated String.
- getGrid() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- getGrid_services() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getGrid_services() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getGridDN() - Method in class edu.isi.pegasus.planner.code.generator.Braindump
-
Returns the distinguished name from the proxy
- getGridFtp(List<MYOSGSiteServiceInfo>) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
Returns the GridFtp
- getGridFTPBandwidthInfo() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
Returns a list of GridFTPBandwidth
objects that contain the
bandwidths by which a site is connected to other sites.
- getGridFTPServers(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
It returns all the gridftp servers corresponding to a specified pool.
- getGridFTPServers(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
It returns all the gridftp servers corresponding to a specified pool.
- getGridFTPTimeout() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the timeout value in seconds after which to timeout in case of
opening sockets to grid ftp server.
- getGridGateway(GridGateway.JOB_TYPE) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns a grid gateway object corresponding to a job type.
- getGridGatewayIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Return an iterator to value set of the Map.
- getGridGatewayJobType() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the corresponding grid gateway job type
- getGridGateways() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Not implemented as yet
- getGridStart() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the GRIDSTART that is to be used to launch the jobs on the grid.
- getGridStartInvokeLength() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the trigger value for invoking an application through kickstart
using kickstart.
- getGridTypeID(String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
-
- getGroup() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getGroup() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getGsiftp(VORSSiteInfo) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil
-
- getGsiftp(MYOSGSiteInfoFacade) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogUtil
-
- getGsiftp_port() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getGsiftp_port() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getGsiftp_server() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getGVDSVersion() - Method in class edu.isi.pegasus.planner.client.Executable
-
Returns the version of the Griphyn Virtual Data System.
- getHandle() - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor
- getHandletoPDAXWriter(String, String, String) - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
It returns the handle to the writer for writing out the pdax file
that contains the relations amongst the partitions and the jobs making
up the partitions.
- getHandleToSiteStore() - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenice method to get the handle to the site store
- getHandleToTransformationCatalog() - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenice method to get the handle to the transformation catalog.
- getHandleToTransformationMapper() - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenice method to get the handle to the transformation mapper.
- getHandleToTransientReplicaCatalog() - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenice method to get the handle to the transient replica catalog
- getHeadNodeFS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the headnode filesystem.
- getHelp() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns whether to display or not.
- getHorizontalClusterPreference() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the users horizontal clustering preference.
- getHorizontalPartitionerBundleValue(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the bundle value for a particular transformation.
- getHorizontalPartitionerCollapseValue(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the collapse value for a particular transformation.
- getHostAddress() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getHostName(String) - Static method in class edu.isi.pegasus.planner.common.Utility
-
This returns the host name of the server, given a url prefix.
- getHostname() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getHttpLog4jURL() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the http url for log4j properties for windward project.
- getID() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- getID() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the ID associated with the job.
- getId() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- getID() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns the logical id of the graph node.
- getID() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
It returns the unique id that is associated with the partition.
- getID() - Method in class edu.isi.pegasus.planner.provisioner.Edge
-
- getID() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
- getIdleNodes() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the total number of nodes that this grid gateway talks to.
- getImplementingClass(String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Given a string readMode returns the
name of the class that implements
that read mode.
- getImplementingClass(String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TCMode
-
This method just checks and gives the correct classname if a user provides the classname in a different case.
- getIn() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
return the list of incoming edges.
- getIndex(Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the index for the namespace.
- getIndex() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
It returns the index to number of the partition.
- getIndex() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
Returns the index for the associated unit.
- getIndex(char) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
Returns the index for a unit.
- getInfo(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
This method gets the info about gridftpbw based on the gridftpbwkey
- getInfo(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
Returns the attribute value of a particular attribute of the server.
- getInfo(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
Returns the attribute value of a particular attribute of the jobmanager.
- getInfo(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Returns an Object
containing the attribute value
corresponding to the key specified.
- getInfo(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
Returns the attribute value of a particular attribute of the work
directory.
- getInheritedRCFiles() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the inherited rc files.
- getINode() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getInputBlocks() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- getInputFiles() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the set of input files associated with the job.
- getInputSize() - Method in class edu.isi.pegasus.planner.invocation.Fifo
-
Accessor
- getInstalled() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Check if the executable is of type installed.
- getInstance(String, String) - Static method in class edu.isi.pegasus.common.logging.LogManager
-
To get a reference to the the object.
- getInstance() - Static method in class edu.isi.pegasus.common.util.CondorVersion
-
Factory method to instantiate the class.
- getInstance(LogManager) - Static method in class edu.isi.pegasus.common.util.CondorVersion
-
Factory method to instantiate the class.
- getInstance() - Static method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Deprecated.
- getInstance() - Static method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Deprecated.
- getInstance() - Static method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns an instance to this properties object.
- getInstance(String) - Static method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns an instance to this properties object.
- getInstance(PlannerOptions) - Static method in class edu.isi.pegasus.planner.common.UserOptions
-
The method used to invoke the
singleton instance the first
time, from the CPlanner class.
- getInstance() - Static method in class edu.isi.pegasus.planner.common.UserOptions
-
The method used to invoke the
singleton instance from the
other classes.
- getInteger(int) - Static method in class edu.isi.pegasus.planner.common.PegRandom
-
This calls the next double function
and returns an integer between the
0 and upper index.
- getInteger(int, int) - Static method in class edu.isi.pegasus.planner.common.PegRandom
-
This calls the next double function
and returns an integer between the
lower index and upper index.
- getInterface() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- getInternalMountPoint() - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType
-
Returns the internal mount point for the directory.
- getInternalMountPointOfWorkDirectory() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the work directory for the compute jobs on a site.
- getInternalWorkDirectory(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
This determines the working directory on remote execution pool on the
basis of whether an absolute path is specified in the pegasus.dir.exec directory
or a relative path.
- getInternalWorkDirectory(Job) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
This determines the working directory on remote execution pool for a
particular job.
- getInternalWorkDirectory(Job, boolean) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
This determines the working directory on remote execution pool or a staging
site for a particular job.
- getInternalWorkDirectory(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
This determines the working directory on remote execution pool on the
basis of whether an absolute path is specified in the pegasus.dir.exec
directory or a relative path.
- getInternalWorkDirectory(String, String, int) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
This determines the working directory on remote execution pool on the
basis of whether an absolute path is specified in the pegasus.dir.exec directory
or a relative path.
- getInterpoolFileTX(Job, Vector) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
This gets the Vector of FileTransfer objects for all the files which have
to be transferred to the destination pool in case of Interpool transfers.
- getIntValue(Object) - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenience method to get the intValue for the object passed.
- getIntValue(Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
A convenience method to get the intValue for the object passed.
- getInvoke() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- getInvoke() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Return the list of Notification objects
- getInvoke() - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Return the list of Notification objects
- getInvoluntarySwitches() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Obtains the involuntary context switches.
- getIPFilesForTransfer() - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Returns a comma separated list of files that are designated
for transfer via condor file transfer mechanism for the job.
- getJDBCURL(String, Properties) - Method in class edu.isi.pegasus.planner.ranking.GetDAX
-
Constructs the jdbc url on the basis fo the driver and db properties.
- getJob(String) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Returns the job object corresponding to the id of the job.
- getJob(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Returns a Job object with id jobid if present otherwise null.
- getJob(int) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Obtains a job at a certain position in the job list.
- getJob(String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the job that has been constructed for a particular partition.
- getJobAggregator() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns the JobAggregator that created this aggregated job.
- getJobAggregator() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns what job aggregator is to be used to aggregate multiple
compute jobs into a single condor job.
- getJobCount() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Obtains the size of the job list.
- getJobList() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Gets an array of all values that constitute the current
content.
- getJobManager() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returnss the remote jobmanager on which the job has to run.
- getJobManager(String, String) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
It returns a jobmanager for the given pool.
- getJobmanagers(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
It returns all the jobmanagers corresponding to a specified site.
- getJobmanagers(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
It returns all the jobmanagers corresponding to a specified pool and
universe.
- getJobmanagers() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
It returns all the jobmanagers corresponding to a specified pool.
- getJobmanagers(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
It returns all the jobmanagers corresponding to a specified pool and
universe.
- getJobmanagers(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
It returns all the jobmanagers corresponding to a specified site.
- getJobmanagers(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
It returns all the jobmanagers corresponding to a specified pool and
universe.
- getJobName() - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
It returns the name of the main/compute job making up the VDS supernode
with which this transfer is related.
- getJobName(String) - Method in class edu.isi.pegasus.planner.visualize.KickstartParser
-
Returns the name of the job from the kickstart output filename.
- getJobName() - Method in interface edu.isi.pegasus.planner.visualize.Measurement
-
Returns the job for which the measurement was taken.
- getJobName() - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement
-
Returns the job for which the measurement was taken.
- getJobnamePrefix() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the job prefix to be used while constructing the job names.
- getJobPriority(Job, int) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Computes the priority for a job based on job type and depth in the workflow
- getJobsInRC(Graph, Set) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
Returns all the jobs whose output files exist in the Replica Catalog.
- getJobsInRC(Vector, Set) - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
This determines the jobs which are in
the RC corresponding to the files found
in the Replica Catalog.
- getJobStatus() - Method in class edu.isi.pegasus.planner.invocation.Status
-
Accessor
- getJobType() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the type of jobs that run via this grid gateway.
- getJobType() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the type of the job.
- getJobTypeDescription() - Method in class edu.isi.pegasus.planner.classes.Job
-
Gets the textual description of the type associated with the job.
- getJobTypeDescription(int) - Method in class edu.isi.pegasus.planner.classes.Job
-
Gets the textual description of the type that can be associated
with a job.
- getKeepTMPValue(String) - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
Returns the int value corresponding to the string value passed.
- getKey(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Returns the key with the prefix stripped off.
- getKey() - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
Returns the connection key.
- getKey() - Method in class edu.isi.pegasus.planner.classes.NameValue
-
Returns the key associated with this tuple.
- getKey(String, String) - Method in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper
-
Adds a prefix to the key and returns it.
- getKey() - Method in class edu.isi.pegasus.planner.dax.MetaData
-
Get the key of this metadata object
- getKey() - Method in class edu.isi.pegasus.planner.dax.Profile
-
Get the key of this Profile
- getKey() - Method in class edu.isi.pegasus.planner.invocation.EnvEntry
-
Accessor
- getKickstartPath() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
A helper method that returns the path to gridlaunch on the site.
- getKickstartPath(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Returns the default path to kickstart as constructed from the
environment variable associated with a site in the site catalog
- getLabel() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the label of the workflow, that was specified in the DAX.
- getLabel() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the label of the workflow, that was specified in the DAX.
- getLabel() - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Returns the DAXlabel.
- getLabel() - Method in class edu.isi.pegasus.planner.dax.Parent
-
- getLabel(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.Label
-
Returns the label for the node.
- getLast() - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain.TransferChain
-
Returns the last element in the chain.
- getLast_Test_Date() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- getLeafNodes() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns all the leaf nodes of the dag.
- getLeafNodes() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
This returns all the leaf nodes of the dag.
- getLeaves() - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Returns the leaf nodes of the Graph.
- getLeaves() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Returns the leaf nodes of the Graph.
- getLevel() - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Returns the debug level.
- getLevel() - Method in class edu.isi.pegasus.common.logging.logger.Log4j
-
Returns the debug level.
- getLevel() - Method in class edu.isi.pegasus.common.logging.LogManager
-
Returns the debug level.
- getLevel() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the level associated with the job.
- getLfn(String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
Get logical transformations on a given resource and/or of a particular type.
- getLFN() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
It returns the lfn of the file that is associated with this transfer.
- getLFN() - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Returns the associated LFN.
- getLFN() - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor
- getLFNCount() - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns the number of LFN's for which the mappings are stored in the
store.
- getLfnProfile(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
Get the LFn profiles associated with a logical transformation
- getLFNs() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
It returns the list of lfns referred to by the DAG.
- getLFNs(boolean) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the list of lfns referred to by the DAG.
- getLFNs() - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns the set of LFN's for which the mappings are stored in the store.
- getLFNs(Set) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns a Set
of lfns for which the mappings are stored in
the store, amongst the Set
passed as input.
- getLineNumber() - Method in exception edu.isi.pegasus.planner.parser.ScannerException
-
- getLineNumber() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner
-
Obtains the current line number in the input stream from the outside.
- getLineNumber() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner
-
Obtains the current line number in the input stream from the outside.
- getLink() - Method in class edu.isi.pegasus.planner.dax.File
-
Get the linkage of the file.
- getLinkage() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the linkage for the file during parsing.
- getLinkCount() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getListValueFromMetadata(Map, String) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
Returns the first value from the List values for a key
- getLocalDirectory() - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
Returns the local directory.
- getLocalPoolEnvVar() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Return returns the environment string specified for the local pool.
- getLocalSiteInfo(String) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil
-
- getLog4JLogFile() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the location of the local log file where you want the messages to
be logged.
- getLogFormatter() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the log formatter to use.
- getLogger() - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenice method to get Logger/
- getLoggingFile() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the file to which all the logging needs to be directed to.
- getLoggingLevel() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the logging level.
- getLoggingLevel() - Method in class edu.isi.pegasus.planner.client.SCClient
-
Returns the logging level.
- getLoggingLevel() - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Returns the logging level.
- getLogicalId(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Returns the id associated with the logical transformation.
- getLogicalID() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the logical id of the job.
- getLogicalName() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the Name of the logical transformation.
- getLogicalNameForJobs(List<Job>) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Returns the logical names for the jobs.
- getLogicalNameForJobs(List<Job>) - Method in class edu.isi.pegasus.planner.cluster.Vertical
-
Returns null as for label based clustering we dont want the transformation
name to be considered for constructing the name of the clustered jobs
- getLogicalNamespace() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the Namespace associated with the logical transformation.
- getLogicalTransformation() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Gets the Fully Qualified Transformation mName in the format NS::Name:Ver.
- getLogicalVersion() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the mVersion of the logical transformation.
- getLogManager() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the log manager to use.
- getMachine() - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor
- getMachine() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- getMachineInfoIterator() - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
Returns an iterator for the machine info objects
- getMachineSpecific() - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Obtains the machine-specific grouping element.
- getMajorFaults() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Obtains the major page faults.
- getMakespan() - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Returns the makespan of the scheduled workflow.
- getMatchingJMList(List, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Returns a list containing only those jobmanager entries that match a
particular universe.
- getMatchingProperties(String, boolean) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the properties matching a particular prefix as a list of
sorted name value pairs, where name is the full name of the matching
property (including the prefix) and value is it's value in the properties
file.
- getMaximumRSS() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- getMeasurement(int) - Method in class edu.isi.pegasus.planner.visualize.JobMeasurements
-
Returns the measurement corresponding to the event type.
- getMeasurements(String) - Method in class edu.isi.pegasus.planner.visualize.WorkflowMeasurements
-
Returns the list of Measurement
objects corresponding to a
particular site.
- getMegaDAGMode() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the megadag generation option .
- getMetaData() - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Returns the List of MetaData objects associated with this Catalog entry object
- getMethodName(int) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Its returns the name of the method that needs to be invoked
to get the object of the implementing pool class.
- getMetricsLogFile() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the path to the file that is used to be logging metrics
Referred to by the "pegasus.log.metrics.file" property.
- getMinorFaults() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Obtains the minfor page faults.
- getMode() - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.All
-
Returns the mode description.
- getMode() - Method in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
Returns the TCMapper Mode.
- getMode() - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Installed
-
- getMode() - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Staged
-
- getMode() - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Submit
-
- getMode() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getModificationTime() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getMountPoint() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Returns the mount point
- getMountPoint() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
Returns the mount point for the file system type.
- getMTime() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the last modified time for the file containing the workflow
description.
- getMTime() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the last modified time for the file containing the workflow
description.
- getMultiplyingFactor(int, int) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
Returns multiplying factor for conversion.
- getName(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Returns the name from the key.
- getName() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- getName() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Returns name of compound transformation.
- getName() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the name of the job.
- getName() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- getName() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Get the name of the executable
- getName() - Method in class edu.isi.pegasus.planner.dax.File
-
Get the name of the file
- getName() - Method in class edu.isi.pegasus.planner.dax.Parent
-
- getName() - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Get the name of the transformation
- getName() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns the logical name of the graph node.
- getName() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
It returns the name of the partition.
- getName() - Method in class edu.isi.pegasus.planner.ranking.Ranking
-
Returns the name of the dax.
- getName() - Method in class edu.isi.pegasus.planner.selector.site.heft.Site
-
Returns the name of the site.
- getName() - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
-
Returns the key of this pair, i.e the left hand side of the mapping.
- getNameOfDAX() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
Returns the name of the dax.
- getNameOfDAX() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Returns the name of the dax.
- getNamespace() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Returns the namespace
- getNamespace() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Get the namespace of the executable
- getNamespace() - Method in class edu.isi.pegasus.planner.dax.File
-
Get the namespace of the file
- getNamespace() - Method in class edu.isi.pegasus.planner.dax.Job
-
- getNameSpace() - Method in class edu.isi.pegasus.planner.dax.Profile
-
Get the namespace of this profile
- getNamespace() - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Get the namespace of the transformation
- getNaturalNumberValue(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns a natural number value ( > 0 ) if the parameter passed is an integer
and greater than zero, else -1
- getNetloggerExitCodePath() - Method in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
Returns the path to exitcode that is to be used on the kickstart
output.
- getNextException() - Method in exception edu.isi.pegasus.planner.catalog.CatalogException
-
Retrieves the exception chained to this
CatalogException
object.
- getNode(String) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Returns the node matching the id passed.
- getNode(String) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Returns the node matching the id passed.
- getNodeIDs() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
It returns the set of the job ids making up the partition.
- getNodeLabel() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- getNodeName() - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor
- getNodeParents(String) - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
Gets all the parents of a particular node.
- getNodes() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Returns a list of nodes making up the partition.
- getNonStandardJavaOptions() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the Set of non standard java options.
- getNonThirdPartySite() - Method in class edu.isi.pegasus.planner.classes.TransferJob
-
Returns the site at which the job would have run if the transfer job was
being run in non third party mode.
- getNoOfJobs() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the number of jobs in the dag on the basis of number of elements
in the dagJobs
Vector.
- getNoOfJobs() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the number of jobs in the dag on the basis of number of elements
in the dagJobs
Vector.
- getNOOPJobName(ADag) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Returns the name of the noop job.
- getNOOPJobName(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Generates the name of the noop job , that is unique for the given
workflow.
- getNotifications(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns a collection of all the notifications that need to be
done for a particular condition
- getNotifications() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns all the notifications associated with the job.
- getNotifications(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns a collection of all the notifications that need to be
done for a particular condition
- getNotifications() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns all the notifications associated with the job.
- getNotifications(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Returns a collection of all the notifications that need to be
done for a particular condition
- getNotifications() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Returns all the notifications associated with the job.
- getNotifications(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns a collection of all the notifications that need to be
done for a particular condition
- getNotifications() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns all the notifications associated with the job.
- getNotifications(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.classes.Notifications
-
Returns a collection of all the notifications that need to be
done for a particular condition
- getNumberOfRescueTries() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the number of times to try for rescue dag submission.
- getNumberOfSites() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
-
Returns the number of sites parsed
- getNumOfTransferProcesses() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
It returns the number of processes of g-u-c that the transfer script needs to
spawn to do the transfers.
- getNumOfTransferStreams() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
It returns the number of streams that each transfer process uses to do the
ftp transfer.
- getOptional() - Method in class edu.isi.pegasus.planner.dax.File
-
Check the optional flag of the file
- getOptions() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Returns the options passed to the planner.
- getOriginalArgString() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the argument string of how planner was invoked.
- getOS() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Returns the OS of the site.
- getOS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the OS of the nodes that this grid gateway talks to.
- getOS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the OS of the site.
- getOs() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Returns the os type of the system.
- getOS() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Get the OS the Executable is compiled for
- getOsg_grid() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getOsg_grid() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getOSRelease() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Returns the OS release of the site.
- getOSRelease() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the OS release of the site.
- getOSRelease() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the OS release of the site.
- getOsRelease() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Get the OS release set for this executable.
- getOSVersion() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Returns the OS version of the site.
- getOSVersion() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the OS version of the site.
- getOSVersion() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the OS version of the site.
- getOsversion() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Returns the os version of the system.
- getOsVersion() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Get the OS version set for this executable.
- getOut() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
return the list of outgoing edges.
- getOutputBlocks() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- getOutputFiles() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the set of output files associated with the job.
- getOutputFiles(Vector, Vector) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
It gets the output files for all the nodes which are specified in
the Vector nodes passed.
- getOutputFilesForTransfer() - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Returns a comma separated list of files that are designated
for transfer via condor file transfer mechanism for the job.
- getOutputPool() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Returns output pool where the
user wants the data products
to be transferred to.
- getOutputSite() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the output site where to stage the output .
- getOutputSize() - Method in class edu.isi.pegasus.planner.invocation.Fifo
-
Accessor
- getPageSize() - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Obtains the page size information.
- getParam(int, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGURLGenerator
-
Returns the parameter name-value pair
- getParent() - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Returns the parent in the edge.
- getParents(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Gets all the parents of a particular node
- getParents(String) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Gets all the parents of a particular node.
- getParents() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns a list of GraphNode
objects that are parents of the node.
- getParentsTransientRC(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Returns a set containing the paths to the parent dax jobs
transient replica catalogs.
- getPartitionCount(String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the number of partitions referred to in the PDAX file.
- getPartitionerDAXCallback() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the DAXCallback that is to be used while parsing the DAX.
- getPartitionerLabelKey() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the key that is to be used as a label key, for labelled
partitioning.
- getPartitionID(int) - Method in class edu.isi.pegasus.planner.partitioner.BFS
-
Constructs the id for the partition.
- getPartitionID(int) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Constructs the id for the partition.
- getPartitionID(int) - Method in class edu.isi.pegasus.planner.partitioner.Label
-
Constructs the id for the partition.
- getPartitioningType() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the partitioning type in case of partition and plan.
- getPartitionName() - Method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
It returns the name of the partitioned dax, that the object is
currently writing or initialized to write.
- getPartitionName() - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
Returns the name of the partition, that needs to be set while creating
the Partition object corresponding to each partition.
- getPartitionParsingMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the mode for parsing the dax while writing out the partitioned
daxes.
- getPath() - Method in interface edu.isi.pegasus.common.credential.CredentialHandler
-
Returns the path to the credential on the submit host.
- getPath(String) - Method in interface edu.isi.pegasus.common.credential.CredentialHandler
-
Returns the path to the credential for a particular site handle
- getPath() - Method in class edu.isi.pegasus.common.credential.impl.Abstract
-
Returns the path to the credential on the submit host.
- getPath(String) - Method in class edu.isi.pegasus.common.credential.impl.Irods
-
Returns the path to irodsEnv.
- getPath(String) - Method in class edu.isi.pegasus.common.credential.impl.Proxy
-
Returns the path to user proxy.
- getPath(String) - Method in class edu.isi.pegasus.common.credential.impl.S3CFG
-
Returns the path to s3cfg.
- getPath(String) - Method in class edu.isi.pegasus.common.credential.impl.Ssh
-
Returns the path to ssh private key.
- getPathOnStageoutSite(String) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Returns the full path on remote output site, where the lfn will reside.
- getPathToChmodExecutable(String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Returns the path to the chmod executable for a particular execution
site by looking up the transformation executable.
- getPathToShellScript(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Returns path to the shell script that is generated
- getPDAX() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the path to the PDAX file being used by the planner.
- getPDAX() - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
Returns the name of the pdax file written out.
- getPDAXFilename(String, int) - Static method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
It constructs the name of the partitioned dax file that has to be written
corresponding to a partition of the dax.
- getPDAXFilename(String, int, boolean) - Static method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
It constructs the name of the partitioned dax file that has to be written
corresponding to a partition of the dax.
- getPDAXSchemaLocation(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the location of the schema for the PDAX.
- getPegasusBag() - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Returns the bag of intialization objects.
- getPegasusBag() - Method in class edu.isi.pegasus.planner.refiner.MainEngine
-
Returns the bag of intialization objects.
- getPegasusHome() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Deprecated.
- getPegasusHome(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Deprecated.
- getPegasusHome(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Returns the value of PEGASUS_HOME for a site.
- getPegasusProperties() - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenice method to get PegasusProperties
- getPegasusRunInvocation() - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Returns the pegasus-run invocation on the workflow planned.
- getPFN() - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Accessor: Obtains the PFN portion from this entry.
- getPfn(String, String, String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
Get physical transformation for a particular logical transformation and/or on a resource and/or of a particular type
- getPFN(int) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Return a PFN as a ReplicaCatalogEntry
- getPFNCount() - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Returns the number of pfn's associated with the lfn.
- getPFNList() - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Returns the list of pfn's as ReplicaCatalogEntry
objects.
- getPfnProfile(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
Get the profiles associated with a physical transformation.
- getPhysicalFiles() - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Returns a List of PFN objects associated with this Catalog entry
- getPhysicalId(String, TCType, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Returns the id of the physical transformation
- getPhysicalIds(String, TCType, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Returns a list of pfnid for a given pfn on any resource, and of any type.
- getPhysicalMemory() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- getPhysicalTransformation() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the physical location of the transformation.
- getPID() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getPID() - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor
- getPlannerOptions() - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenice method to get PlannerOptions
- getPool() - Method in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
Returns the pool id of the associated resource in this request.
- getPoolConfig() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
This class returns the reference to the PooConfig
object
containing information about all the pools.
- getPoolConfig() - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
This class returns the reference to the PooConfig
object
containing information about all the pools.
- getPoolEntry(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
Gets the pool information from the pool.config file on the basis
of the name of the pool, and the universe.
- getPoolEntry(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Gets the pool information from the pool.config file on the basis
of the name of the pool, and the universe.
- getPoolFile() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the path to the pool file.
- getPoolMode() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Returns a textual description of the pool mode being used.
- getPoolMode() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Text
-
Returns a textual description about the pool mode that is
implemented by this class.
- getPoolMode() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.XML
-
Returns a textual description about the pool mode that is
implemented by this class.
- getPoolMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the mode to be used for accessing the pool information.
- getPoolName() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
Return the pool for which the transfers are grouped
- getPoolProfile(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
It returns the profile information associated with a particular pool.
- getPoolProfile(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
It returns the profile information associated with a particular pool.
- getPoolProfile(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
It returns profile information associated with a particular namespace and
pool.
- getPools() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
It returns all the pools available in the site catalog
- getPools() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
It returns all the pools available in the site catalog
- getPoolSchemaLocation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the location of the schema for the DAX.
- getPoolSchemaLocation(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the location of the schema for the site catalog file.
- getPosition() - Method in exception edu.isi.pegasus.common.util.ProfileParserException
-
Obtains the position at which point the exception was thrown.
- getPosition() - Method in exception edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParserException
-
Obtains the position at which point the exception was thrown.
- getPosition() - Method in class edu.isi.pegasus.planner.invocation.ArgEntry
-
Accessor
- getPostScriptLogFile(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript
-
Returns the path to the postscript log file for a job.
- getPOSTScriptPath(String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Returns the path to the postscript of a particular type
- getPostScriptProperties(PegasusProperties) - Method in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
Returns the properties that need to be passed to the the postscript
invocation in the java format.
- getPostScriptProperties(PegasusProperties) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
Returns an empty string, as python version of exitcode cannot parse properties
file.
- getPostScriptProperties(PegasusProperties) - Method in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript
-
Returns the properties that need to be passed to the the postscript
invocation in the java format.
- getPrefix(int) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Returns the prefix that needs to be logged corresponding to a particular
message type, when a message is being logged.
- getPreScriptArguments() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the arguments to the prescript for the job if set.
- getPreScriptPath() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the path to the prescript for the job if set.
- getPrintStream(String) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Sets an internal writer to point to a particular stream.
- getPrintStream(int) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Returns a PrintWriter stream on which to log the message.
- getPriority(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Returns the priority for the transfer job as specified in the properties
file.
- getProfile() - Method in class edu.isi.pegasus.planner.classes.Profile
-
Returns the Profile (namespace, value and key);
- getProfile() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Parses a single line and returns a profile.
- getProfileKey() - Method in class edu.isi.pegasus.planner.classes.Profile
-
Returns the Key of the Profile
- getProfileKeyIterator(Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns a iterator over the profile keys corresponding to a particular namespace.
- getProfileKeyIterator() - Method in class edu.isi.pegasus.planner.namespace.Hints
-
Provides an iterator to traverse the profiles by their keys.
- getProfileKeyIterator() - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Provides an iterator to traverse the profiles by their keys.
- getProfileNamespace() - Method in class edu.isi.pegasus.planner.classes.Profile
-
Returns the NameSpace of the Profile
- getProfiles() - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the list of profiles for all namespaces.
- getProfiles(String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the list of profiles corresponding to a single namespace
- getProfiles(Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the list of profiles corresponding to a single namespace
- getProfiles(Namespace) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the list of profiles corresponding to a single namespace
- getProfiles() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the profiles associated with the site.
- getProfiles() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the list of profiles associated with the transformation.
- getProfiles(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the profiles for a particular Namespace.
- getProfiles(Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns all the profiles relevant to a particular namespace
- getProfiles() - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Return the List of
Profile
objects associated with this Catalog entry
- getProfiles() - Method in class edu.isi.pegasus.planner.dax.PFN
-
- getProfilesForTransformation() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Returns a list of profiles that have to be applied to the entries for
all the sites corresponding to a transformation.
- getProfileValue() - Method in class edu.isi.pegasus.planner.classes.Profile
-
Returns the Value for the profile
- getProgramName(String) - Method in interface edu.isi.pegasus.common.logging.Event
-
Returns the program name for the software whose log statement are logged.
- getProgramName(String) - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Returns the program name for the software whose log statement are logged.
- getProgramName(String) - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Returns the program name for the software whose log statement are logged.
- getProgramName(String) - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Returns the program name for the software whose log statement are logged.
- getProgramName(String) - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Returns the program name for the software whose log statement are logged.
- getProperties() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the path to the properties file for the run.
- getPropertiesInSubmitDirectory() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the path to the property file that has been writting out in
the submit directory.
- getProperty(String) - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Accessor: access to the internal properties as read from file.
- getProperty(String, String) - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Accessor: access to the internal properties as read from file
An existing system property of the same key will have precedence
over any project property.
- getProperty(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.AbstractSiteCatalogResource
-
Returns the property value
- getProperty(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
-
Returns the property value
- getProperty(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfo
-
Returns the property value
- getProperty(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
-
Returns the property value
- getProperty(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
-
Returns the property value
- getProperty(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteVOOwnershipInfo
-
Returns the property value
- getProperty(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
It allows you to get any property from the property file without going
through the corresponding accesor function in this class.
- getProperty(String, String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
This function is used to check whether a deprecated property is used or
not.
- getProperty(String, String, String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
This function is used to check whether a deprecated property is used or
not.
- getProperty(String, String) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted
-
Returns the name of the property, for a particular site X.
- getPropertyKey(String, String) - Method in class edu.isi.pegasus.planner.client.PegasusGetSites
-
Returns the full name of the property key with the appropriate prefix
- getPropertyKey(int) - Static method in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
Returns the name of the property that needs to be loaded for a particular
type.
- getProtocol() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Returns protocol implemented by the file server.
- getQuotedValue(String) - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Parses a quoted value and strips out the enclosing quotes.
- getRandomDir() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the random directory option.
- getRandomDirectory(ADag) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Sets the basename of the random directory that is created on the remote
sites per workflow.
- getRandomDirName() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the name of the random
directory, only if the generate
Random Dir flag is set.
- getRandomDirName() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Returns the name of the random
directory, only if the generate
Random Dir flag is set.
- getRank() - Method in class edu.isi.pegasus.planner.ranking.Ranking
-
Returns the rank.
- getRank() - Method in class edu.isi.pegasus.planner.selector.replica.Regex.Rank
-
Returns the rank associated with it.
- getReceived() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- getRefinementProvenanceStore() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the provenance store to use to log the refiner actions.
- getRegex() - Method in class edu.isi.pegasus.planner.selector.replica.Regex.Rank
-
Returns the underlying regex pattern associated with the Rank object.
- getRegexSet(Properties) - Method in class edu.isi.pegasus.planner.selector.replica.Regex
-
Returns a sorted set containing the various Patterns pre-compiled.
- getRegister() - Method in class edu.isi.pegasus.planner.dax.File
-
Get the register flag of this file.
- getRegisterFlag() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the value of the register flag
- getRegistrationFiles() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Returns the collection of registration files associated with this transfer
container.
- getRegJobName(int, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
Generates the name of the transfer job, that is unique for the given
workflow.
- getRegName() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Returns the name of the registration job.
- getRelations() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
A function to return the child-parent relations for the jobs making up the
partition.
- getRelativeDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the relative directory.
- getRelativeSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the path to the relative submit directory.
- getRelativeSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the relative submit directory.
- getRelativeSubmitDirectoryOption() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the relative submit directory option.
- getRelease() - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor
- getRemoteExecutable() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the path of the underlying executable on the remote grid site.
- getRemoveDirJobName(ADag, String) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
It returns the name of the remove directory job, that is to be assigned.
- getReplicaCatalogIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Return an iterator to the replica catalog associated with the site.
- getReplicaLocation(String) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns a ReplicaLocation
corresponding to the LFN.
- getReplicaMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the replica mode.
- getReplicaSelector() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the name of the selector to be used for selection amongst the
various replicas of a single lfn.
- getReplicaStore() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the Replica Store
- getReplicaStoreFromFiles(Set) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Ends up loading a Replica Store from replica catalog files
- getRequestID() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the request id.
- getResource(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
Get and print the Resource entries for a given logical transformation and transformation type
- getResource() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getResourceContact() - Method in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
Returns the url of the resource to contact.
- getResourceHandle() - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Obtains the resource handle from the attributes map.
- getResourceId() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the resource where the transformation is located.
- getResourceType() - Method in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
Returns the type of the request.
- getRLIURL() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the url to the RLI of the RLS.
- getRLSTimeout() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
It returns the timeout value in seconds after which to timeout in case of
no activity from the RLS.
- getRootDirectoryNameForPegasus(String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Does regex magic to figure out the version of pegasus from the url, and
use it to construct the name of pegasus directory, when worker package
is untarred.
- getRootNodes() - Method in class edu.isi.pegasus.planner.classes.ADag
-
It determines the root Nodes for the ADag looking at the relation pairs
of the adag.
- getRootNodes() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
It determines the root Nodes for the ADag looking at the relation pairs
of the adag.
- getRootNodes() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Returns the root nodes in the partition.
- getRoots() - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Returns the root nodes of the Graph.
- getRoots() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Returns the root nodes of the Graph.
- getRootWorkflowUUID() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the UUID for the Root workflow
- getRootWorkflowUUID() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the root workflow UUID if defined in the properties, else null
Referred to by the "pegasus.workflow.root.uuid" property.
- getRuntime() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the expected runtime for the job that is set using the
setRuntime method.
- getRuntime() - Method in class edu.isi.pegasus.planner.ranking.Ranking
-
Returns the runtime.
- getScheduler() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the the underlying scheduler that gateway talks to.
- getSchedulerType(String) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil
-
- getSchedulerType(String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogUtil
-
- getSchemaDir() - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Accessor to schema directory
- getSchemaDir() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Accessor to the schema directory of the Pegasus install
- getSchemaLocation() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
-
- getSchemaLocation() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
- getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
- getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Helps the load database to locate the DAX XML schema, if available.
- getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Returns the local path to the XML schema against which to validate.
- getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.Parser
-
Helps the load database to locate the XML schema, if available.
- getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.PDAXParser
-
Helps the load database to locate the PDAX XML schema, if available.
- getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogParser
-
Returns the local path to the XML schema against which to validate.
- getSchemaNamespace() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
-
Returns the XML schema namespace that a document being parsed conforms
to.
- getSchemaNamespace() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
Returns the XML schema namespace that a document being parsed conforms
to.
- getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
Returns the XML schema namespace that a document being parsed conforms
to.
- getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Returns the XML schema namespace that a document being parsed conforms
to.
- getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Returns the XML schema namespace that a document being parsed conforms
to.
- getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.Parser
-
Returns the XML schema namespace that a document being parsed conforms
to.
- getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.PDAXParser
-
Returns the XML schema namespace that a document being parsed conforms
to.
- getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogParser
-
Returns the XML schema namespace that a document being parsed conforms
to.
- getSchemaOfDocument(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
A convenience method that tries to get the name of the schema the document
refers to.
- getScratch() - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Returns the scratch area on the head node.
- getScratch() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Returns the scratch area on the head node.
- getScriptFooter() - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Returns the footer for the generated shell script.
- getScriptHeader(String) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Returns the header for the generated shell script.
- getSeMountPoint(SiteInfo) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Return the storage mount point for a particular pool.
- getSent() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- getSetXBitJobName(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Generates the name of the setXBitJob , that is unique for the given
workflow.
- getSetXBitJobName(String, int) - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Generates the name of the setXBitJob , that is unique for the given
workflow.
- getSharedDir() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Accessor to the bin directory of the Pegasus install
- getSharedDirectory() - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
Returns the shared directory.
- getSharedRSS() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- getSharedStateDir() - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Accessor to $PEGASUS_HOME/com.
- getShortname() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getShortname() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getSignalNumber() - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Accessor
- getSignalNumber() - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Accessor
- getSignals() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Obtains the system signals sent.
- getSISiteBundleValue(String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Determines the bundle factor for a particular site on the basis of the
stage in bundle value associcated with the underlying transfer
transformation in the transformation catalog.
- getSite() - Method in class edu.isi.pegasus.planner.dax.PFN
-
- getSite() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Returns the site transformation for a site, and moves the scanner to hold the next
TransformationCatalogReservedWord
.
- getSiteBundleValue(String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
Determines the bundle factor for a particular site on the basis of the
key associcated with the underlying transfer transformation in the
transformation catalog.
- getSiteForCleanup(Job) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Returns site to be used for the cleanup algorithm.
- getSiteHandle() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the site handle for the site
- getSiteHandle() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the handle of the site where the job is scheduled.
- getSiteHandle() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser
-
Returns the site handle for a site, and moves the scanner to hold the next
SiteCatalogReservedWord
.
- getSiteList(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
Returns a list of sites that are valid sites for a given lfn and a list of sites.
- getSiteList(String) - Method in class edu.isi.pegasus.planner.classes.TCMap
-
Returns a List of siteid's that are valid for a particular lfn.
- getSiteList(String, List) - Method in class edu.isi.pegasus.planner.classes.TCMap
-
Returns a list of siteid's that are valid for a particular lfn and
among a list of input sites
- getSiteMap(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.All
-
This method returns a Map of compute sites to List of TransformationCatalogEntry
objects that are valid for that site.
- getSiteMap(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
This method returns a Map of compute sites to List of
TransformationCatalogEntry objects that are valid for that site.
- getSiteMap(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Installed
-
This method returns a Map of compute sites to List of
TransformationCatalogEntry objects that are valid for that site.
- getSiteMap(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Staged
-
This method returns a Map of compute sites to List of TransformationCatalogEntry
objects that are valid for that site
- getSiteMap(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Submit
-
This method returns a Map of compute sites to List of TransformationCatalogEntry
objects that are valid for that site
- getSiteMap(String) - Method in class edu.isi.pegasus.planner.classes.TCMap
-
Returns a HashMap of sites as keys and a List of TransformationCatalogEntry object as values.
- getSites() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
-
Returns the site's list
- getSites() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
Returns information about all the sites.
- getSiteSelectorKeep() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a value designating whether we need to keep the temporary files
that are passed to the external site selectors.
- getSiteSelectorMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the class name of the site selector, that needs to be invoked to do
the site selection.
- getSiteSelectorPath() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the path to the external site selector that needs to be called
out to make the decision of site selection.
- getSiteSelectorTimeout() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
It returns the timeout value in seconds after which to timeout in case of
no activity from the external site selector.
- getSitesMissingInformation(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getSitesSet(String) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted
-
Returns a set of third party sites.
- getSitesTCEntries(String, List) - Method in class edu.isi.pegasus.planner.classes.TCMap
-
Retrieves all the entries matching a particular lfn for the sites
passed.
- getSiteStore() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogParser
-
Returns the constructed site store object
- getSiteTCEntries(String, String) - Method in class edu.isi.pegasus.planner.classes.TCMap
-
This method returns a list of TransformationCatalogEntry objects
for a given transformation and siteid
- getSize() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the size for the file.
- getSize() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getSize() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
Returns the size in the units associated with it.
- getSize(char) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
Returns the size in particular unit.
- getSizes(String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsage
-
Returns the list of Space
objects corresponding to a
particular site.
- getSLSInputLFN(Job) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Returns the LFN of sls input file.
- getSLSInputLFN(Job) - Method in interface edu.isi.pegasus.planner.transfer.SLS
-
Returns the LFN of sls input file.
- getSLSInputLFN(Job) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Returns the LFN of sls input file.
- getSLSOutputLFN(Job) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Returns the LFN of sls output file.
- getSLSOutputLFN(Job) - Method in interface edu.isi.pegasus.planner.transfer.SLS
-
Returns the LFN of sls output file.
- getSLSOutputLFN(Job) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Returns the LFN of sls output file.
- getSLSTransferArguments() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the extra arguments with which the SLS transfer executables needs
to be invoked.
- getSLSTransferImplementation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the sls transfer implementation that is to be used for constructing
the transfer jobs.
- getSourceURL() - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Returns a single source url associated with the transfer.
- getSourceURL(boolean) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Returns a single source url associated with the transfer.
- getSpace(int, int) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
Gets the required space for pretty printing.
- getSpaceReading(int) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace
-
Returns the space reading for a particular type of job of event.
- getSponsor_vo() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getSponsor_vo() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getStackRSS() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- getStagedExecutableBaseName() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the basename for the staged executable corresponding to the
job.
- getStagedExecutableBaseName(String, String, String) - Static method in class edu.isi.pegasus.planner.classes.Job
-
Returns the basename for the staged executable corresponding to the
job.
- getStageInPoolTransfer(Map<String, Bundle.PoolTransfer>, String, int, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Returns the appropriate stagein pool transfer for a particular site.
- getStageOutPoolTransfer(String, boolean, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Returns the appropriate pool transfer for a particular site.
- getStagingDelimiter() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the delimiter to be used for constructing the staged executable
name, during transfer of executables to remote sites.
- getStagingSite(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the staging site for an execution site.
- getStagingSite(String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Returns the staging site for a particular execution site.
- getStagingSite(Job) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Returns the staging site to be used for a job.
- getStagingSite(Job) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Returns the staging site to be used for a job.
- getStagingSiteHandle() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the staging site.
- getStamp() - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Obtains the time stamp information when the remote machine element
was recorded.
- getStart() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getStart() - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor
- getStartDate() - Method in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
-
Returns the start date formatted as MM/dd/yyyy.
- getStartEventMessage() - Method in interface edu.isi.pegasus.common.logging.Event
-
Creates the start message for the event.
- getStartEventMessage() - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Creates the start message for the event on top of the internal stack
- getStartEventMessage() - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Creates the start message for the event.
- getStartEventMessage() - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Creates the start message for the event.
- getStartEventMessage() - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Creates the start message for the event on top of the internal stack
- getStartTime() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the start time for the planning operation.
- getStatCall(int) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Obtains a stat at a certain position in the stat list.
- getStatCount() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Obtains the size of the stat list.
- getState() - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
Returns the state.
- getState() - Method in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
Returns the state.
- getStatement(int) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Singleton manager for prepared statements.
- getStatement(int) - Method in class edu.isi.pegasus.planner.catalog.work.Database
-
Singleton manager for prepared statements.
- getStatement(int) - Method in class edu.isi.pegasus.planner.ranking.GetDAX
-
Singleton manager for prepared statements.
- getStatInfo() - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor
- getStatList() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Gets an array of all values that constitute the current
content.
- getStatus() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- getStatus() - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor
- getStatus() - Method in class edu.isi.pegasus.planner.invocation.Status
-
Accessor
- getStdErr() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the file to which the stderr of the job is written to.
- getStderr() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- getStdIn() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the file from which the stdin is picked up.
- getStdin() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Get the STDIN file object
- getStdOut() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the file to which the stdout of the job is written to.
- getStdout() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- getStorage() - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Returns the storage area on the head node.
- getStorage() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Returns the storage area on the head node.
- getStorageDirectory() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the storage directory suffix or absolute specified
that is appended/replaced to the storage-mount-point specified in the
pool catalog for the various pools.
- getStringValue(Object) - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Returns a String value, that a particular key is mapped to in this
namespace.
- getSubInfo(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
This returns a Job object corresponding to the job by looking through
all the subInfos.
- getSubInfo(String) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Returns the Job object for the job specified.
- getSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the path to the directory where the submit files are to be
generated.
- getSubmitFileDir() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Returns the directory where the
user wants the submit files to be
generated.
- getSubmitHostname() - Method in class edu.isi.pegasus.planner.code.generator.Braindump
-
Returns the submit hostname
- getSubmitHostPathToPegasusLiteCommon() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Determines the path to common shell functions file that Pegasus Lite
wrapped jobs use.
- getSubmitHostPathToPegasusLiteLocal() - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
Determines the path to PegasusLite local job
- getSubmitHostPathToShellRunnerFunctions() - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Determines the path to common shell functions file that the generated
shell script will use.
- getSubmitLogsDirectory() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the the path to the logs directory on the submit host.
- getSubmitMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns which submit mode to be used to submit the jobs on to the grid.
- getSwaps() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Obtains number of swap operations.
- getSyncJob(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Returns the current synch job for a site.
- getSyncJobBetweenLevelsName(String, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Returns the name of the job that acts as a synchronization node in
between stage in jobs of different levels.
- getSysConfDir() - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Accessor to $PEGASUS_HOME/etc.
- getSysConfDir() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Accessor to $PEGASUS_HOME/etc.
- getSysInfo() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the System Information associated with the Site.
- getSysInfo(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Returns the SysInfo
for the site
- getSysinfo(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
Returns the System information for a single site.
- getSysinfo(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Returns the System information for a single site.
- getSysInfo() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the System Information associated with the transformation.
- getSysInfoId(VDSSysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Gets the id for the system information entry.
- getSysInfos(List<String>) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
- getSysinfos(List) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
Returns the System information for a bunch of sites.
- getSysinfos(List) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Returns the System information for a bunch of sites.
- getSystemName() - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor
- getSystemTime() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Obtains the system time from the object.
- getTag() - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor
- getTag() - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
Accessor
- getTaskCount(Job) - Method in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper
-
Returns the task count for a job.
- getTaskCount(Job) - Method in class edu.isi.pegasus.planner.code.generator.Stampede
-
Returns the task count for a job.
- getTC() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
Print all the contents of the TC in pretty print
- getTCEntry(Job) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Helper method to get an entry from the transformation catalog for an
installed executable.
- getTCEntry(String) - Method in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
Returns the TCEntry object for the rm executable on a grid stagingSite.
- getTCEntry(String) - Method in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
Returns the TCEntry object for the rm executable on a grid site.
- getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.transformation.Installed
-
Returns a list of TransformationCatalogEntry objects of type installed
from a List of valid TCEntries
- getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.transformation.Random
-
This method randomly selects one of the records from numerous valid
Transformation Catalog Entries returned by the TCMapper.
- getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.transformation.RoundRobin
-
- getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.transformation.Staged
-
Takes a list of TransformationCatalogEntry objects and returns 1 or
many TransformationCatalogEntry objects as a list by selecting only Static stageable binary's
- getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.transformation.Submit
-
This method returns a list of TransformationCatalogEntry objects of type
STATIC_BINARY and only available on the Submit machine( "local" site).
- getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.TransformationSelector
-
Takes a list of TransformationCatalogEntry objects and returns 1 or many
TransformationCatalogEntry objects as a list depending on the type of selection algorithm.
- getTCList(String, String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
This method returns a List of TransformationCatalog Objects valid for a
particular transformation and for a particular compute site
- getTCLogicalNames(String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Get the list of LogicalNames available on a particular resource.
- getTCLogicalNames(String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Get the list of LogicalNames available on a particular resource.
- getTCLogicalNames(String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Get the list of LogicalNames available on a particular resource.
- getTCLogicalNames(String, TCType) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Get the list of LogicalNames available on a particular resource.
- getTCMapperMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the mode for loading the transformation mapper that sits in
front of the transformation catalog.
- getTCMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the mode to be used for accessing the Transformation Catalog.
- getTCPath() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the location of the transformation catalog.
- getTCXML() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
- getTempFilename() - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
Creates a temporary file and obtains its name.
- getTerminate() - Static method in class edu.isi.pegasus.planner.invocation.SimpleServer
-
- getTextToPoolConfig(String) - Method in class edu.isi.pegasus.planner.client.SCClient
-
Generates the old site catalog object reading in from text file.
- getThirdPartySites(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the comma separated list of third party sites, specified in the
properties.
- getThirdPartySites(String) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
Returns a set of third party sites.
- getThirdPartySites(String) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Returns a set of third party sites.
- getThirdPartySitesRemote(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the comma separated list of third party sites for which
the third party transfers are executed on the remote sites.
- getTime() - Method in interface edu.isi.pegasus.planner.visualize.Measurement
-
Returns the time at which the measurement was taken.
- getTime() - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement
-
Returns the time at which the measurement was taken.
- getTimeStamp() - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Gets the timestamp nicely formatted.
- getTmp_loc() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getTmp_loc() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getTmp_space() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getTmp_space() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getTo() - Method in class edu.isi.pegasus.planner.provisioner.Edge
-
return the 'to' task
- getTotalNodes() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the total number of nodes that this grid gateway talks to.
- getTotalSize() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
Returns the total directory size.
- getTransfer() - Method in class edu.isi.pegasus.planner.dax.File
-
Get the transfer type of the file
- getTransferArguments() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the arguments with which the transfer executable needs
to be invoked.
- getTransferContainerIterator() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
Returns the iterator to the list of transfer containers.
- getTransferFlag() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the tristate transfer mode that is associated with the file.
- getTransferImplementation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the transfer implementation that is to be used for constructing
the transfer jobs.
- getTransferImplementation(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the transfer implementation.
- getTransferInterPriority() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the priority to be set for the interpool transfer job.
- getTransferPriority(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the transfer priority.
- getTransferRefiner() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the transfer refiner that is to be used for adding in the
transfer jobs in the workflow
Referred to by the "pegasus.transfer.refiner" property.
- getTransferStageInPriority() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the priority to be set for the stage in transfer job.
- getTransferStageOutPriority() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the priority to be set for the stage out transfer job.
- getTransformation() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getTransformation() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Returns the transformation name, and moves the scanner to hold the next
TransformationCatalogReservedWord
.
- getTransformationCatalogEntry(String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Returns the transformation catalog entry for kickstart on a site
- getTransformationCatalogEntry(String, Profiles, boolean) - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Constructs a single transformation catalog entry and returns it.
- getTransformationCatalogEntry(String, int) - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Retrieves the transformation catalog entry for the executable that is
being used to transfer the files in the implementation.
- getTransformationCatalogEntry(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Retrieves the transformation catalog entry for the executable that is
being used to transfer the files in the implementation.
- getTransformationCatalogEntry(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
Retrieves the transformation catalog entry for the executable that is
being used to transfer the files in the implementation.
- getTransformationCatalogEntry(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Retrieves the transformation catalog entry for the executable that is
being used to transfer the files in the implementation.
- getTransformationCatalogEntry(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Retrieves the transformation catalog entry for the executable that is
being used to transfer the files in the implementation.
- getTransformationCatalogEntry(String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Retrieves the transformation catalog entry for the executable that is
being used to transfer the files in the implementation.
- getTransformations(String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Returns a list of transformation names matching on a site and
transformation type.
- getTransformationStore() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the Transformation Store
- getTransientRegFlag() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the transient registration flag (the value of dontRegister).
- getTransientTransferFlag() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns whether the transfer is transient or not.
- getTruncated() - Method in class edu.isi.pegasus.planner.invocation.Data
-
Accessor
- getTXJobName(int, int, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
Generates the name of the transfer job, that is unique for the given
workflow.
- getTXJobName(int, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
Generates the name of the transfer job, that is unique for the given
workflow.
- getTXName() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the name of the underlying transformation.
- getTXName() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Returns the name of the transfer job.
- getTXNamespace() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the namespace of the underlying transformation.
- getTXPoolEntry(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Gets the pool object to be used for the transfer universe.
- getTXSelectorMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the mode for loading the transformation selector that selects
amongst the various candidate transformation catalog entry objects.
- getTXVersion() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the version of the underlying transformation.
- getType() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the type of jobs that run via this grid gateway.
- getType() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Returns the type of replica catalog.
- getType() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- getType() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the type of the transformation.
- getType() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the tristate transfer mode that is associated with the file.
- getType() - Method in class edu.isi.pegasus.planner.dax.MetaData
-
Get the type of the metdata object
- getUID() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getUID() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getUMask() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getUname() - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Obtains the utsname generic system information record.
- getUnits() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
Returns the units associated with the size.
- getUniverse() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the universe associated with the job.
- getUnsharedRSS() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- getUntarJobName(ADag, String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
It returns the name of the untar job, that is to be assigned.
- getUpLen() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
return the UpLength of this task.
- getURL() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Returns the url for the replica catalog.
- getURL(Properties) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGURLGenerator
-
Returns the url
- getURL() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC
-
Returns the LRC url associated with a pool.
- getURL(Map, boolean) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Returns a single url from the map passed.
- getURL() - Method in class edu.isi.pegasus.planner.dax.PFN
-
- getURLPrefix() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Returns the url prefix .
- getURLPrefix(boolean) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
A helper method that returns the url prefix for one of the gridftp server
associated with the pool.
- getURLPrefix(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Returns the url prefix of a gridftp server on the pool.
- getUsage() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getUsage() - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor
- getUseOfSymbolicLinks() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
It returns whether the use of symbolic links in case where the source
and destination files happen to be on the same file system.
- getUser() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getUser() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getUserTime() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Obtains the user time from the object.
- getUses() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- getUses() - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Get the List of files and/or executables being used by the transformation
- getUtil_jm() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getUtil_jm() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getUtilJobManager(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
Returns the utility job manager path
- getValue() - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
Returns the key value.
- getValue(String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Deprecated.
- getValue() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
-
Returns the value of the architecture as string.
- getValue() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
-
Returns the value of the operating system as string.
- getValue() - Method in class edu.isi.pegasus.planner.classes.NameValue
-
Returns the value associated with this tuple.
- getValue() - Method in class edu.isi.pegasus.planner.dax.MetaData
-
Get the value of the metdata object
- getValue() - Method in class edu.isi.pegasus.planner.dax.Profile
-
Get the value of this profile
- getValue() - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.ArgEntry
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.ArgString
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.Arguments
-
This abstract method is called by higher-level functions to
obtain a single string representation of the arguments.
- getValue() - Method in class edu.isi.pegasus.planner.invocation.ArgVector
-
Returns the full argument vector as one single string.
- getValue() - Method in class edu.isi.pegasus.planner.invocation.Boot
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.CommandLine
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.CPU
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.Data
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.EnvEntry
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.File
-
Accessor
- getValue() - Method in interface edu.isi.pegasus.planner.invocation.HasText
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.Ignore
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.Stamp
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.Uname
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.WorkingDir
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.parser.tokens.Identifier
-
Obtains the token value of a given reserved word token.
- getValue() - Method in class edu.isi.pegasus.planner.parser.tokens.QuotedString
-
Obtains the token value of a given string token.
- getValue() - Method in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
Obtains the token value of a given reserved word token.
- getValue() - Method in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
Obtains the token value of a given reserved word token.
- getValue() - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
-
Returns the value associated with this pair.
- getValue() - Method in interface edu.isi.pegasus.planner.visualize.Measurement
-
Returns the value of the measurement.
- getValue() - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement
-
Returns the value of the measurement.
- getVDS_HOME(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Returns the value of VDS_HOME for a site.
- getVDSHome() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Deprecated.
- getVDSHome(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Deprecated.
- getVDSKeyValue() - Method in interface edu.isi.pegasus.planner.code.GridStart
-
Returns the value of the vds profile with key as VDS.GRIDSTART_KEY,
that would result in the loading of this particular implementation.
- getVDSKeyValue() - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Returns the value of the vds profile with key as Pegasus.GRIDSTART_KEY,
that would result in the loading of this particular implementation.
- getVDSKeyValue() - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Returns the value of the vds profile with key as Pegasus.GRIDSTART_KEY,
that would result in the loading of this particular implementation.
- getVDSKeyValue() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Returns the value of the vds profile with key as Pegasus.GRIDSTART_KEY,
that would result in the loading of this particular implementation.
- getVDSProperties() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the VDS properties that were set by the user.
- getVDSProperties() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the CommonProperties that this object encapsulates.
- getVDSSuperNode() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the name of the compute job of Pegasus supernode containing this job.
- getVDSSysInfo() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the sysinfo for the site.
- getVDSSysInfo(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Returns the VDSSysInfo
for the site
- getVDSSysInfo() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the System Information in the old VDS format associated with the
transformation.
- getVdt_version() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getVdt_version() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getVersion() - Method in class edu.isi.pegasus.common.util.CondorVersion.CondorVersionCallback
-
Returns the condor version detected.
- getVersion() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Returns the version
- getVersion() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Get the version of the executablle
- getVersion() - Method in class edu.isi.pegasus.planner.dax.File
-
Get the version of the file
- getVersion() - Method in class edu.isi.pegasus.planner.dax.Job
-
- getVersion() - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Get the version of the transformation
- getVersion() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getVersionOfDAX(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
A convenience method that tries to determine the version of the dax
schema by reading ahead in the DAX file, and searching for
the version attribue in the file.
- getVOGroup() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the VO Group.
- getVOGroup() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the VO Group to which the user belongs
- getVOID(String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
-
- getVoInfo() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getVoluntarySwitches() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Obtains the voluntary context switches.
- getWhat() - Method in class edu.isi.pegasus.planner.dax.Invoke
-
Get what to invoke
- getWhen() - Method in class edu.isi.pegasus.planner.dax.Invoke
-
Get when to Invoke
- getWingsPropertiesFile() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the path to the wings properties file.
- getWingsRequestID() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the request id.
- getWntmp_loc() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- getWntmp_loc() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- getWorkerNodeDirectory(Job) - Method in interface edu.isi.pegasus.planner.code.GridStart
-
Returns the directory in which the job executes on the worker node.
- getWorkerNodeDirectory(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Returns the exectionSiteDirectory in which the constituentJob executes on the worker node.
- getWorkerNodeDirectory(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Returns the directory in which the job executes on the worker node.
- getWorkerNodeDirectory(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Returns the directory in which the job executes on the worker node.
- getWorkerNodeFS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the worker node filesystem.
- getWorkerPackageMap() - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenice method to get the worker package
- getWorkerSharedDirectory() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
-
Returns the directory shared amongst the worker nodes only.
- getWorkerSharedDirectory() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage
-
Returns the directory shared amongst the worker nodes only.
- getWorkflow() - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Returns a reference to the workflow that is being refined by the refiner.
- getWorkflow() - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
Returns a reference to the workflow that is being refined by the refiner.
- getWorkflow() - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Returns a reference to the workflow that is being refined by the refiner.
- getWorkflow() - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
Returns a reference to the workflow that is being refined by the refiner.
- getWorkflow() - Method in interface edu.isi.pegasus.planner.refiner.Refiner
-
Returns a reference to the workflow that is being refined by the refiner.
- getWorkflow() - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
Returns a reference to the workflow that is being refined by the refiner.
- getWorkflowFileName(PlannerOptions, String, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Constructs the basename to a workflow file that.
- getWorkflowLabel() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getWorkflowMetrics() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the metrics about the workflow.
- getWorkflowMetrics() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the workflow metrics so far.
- getWorkflowMetrics() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the workflow metrics.
- getWorkflowTimestamp() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getWorkflowUUID() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the UUID for the workflow
- getWorkingDirectory() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getWriter(Job) - Method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Returns an open stream to the file that is used for writing out the
job information for the job.
- getWriter(Job) - Method in class edu.isi.pegasus.planner.code.generator.HashedFile
-
Returns an open stream to the file that is used for writing out the
job information for the job.
- getXMLProducer() - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Returns a reference to the XMLProducer, that generates the XML fragment
capturing the actions of the refiner.
- getXMLProducer() - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
Returns a reference to the XMLProducer, that generates the XML fragment
capturing the actions of the refiner.
- getXMLProducer() - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Returns a reference to the XMLProducer, that generates the XML fragment
capturing the actions of the refiner.
- getXMLProducer() - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
Returns a reference to the XMLProducer, that generates the XML fragment
capturing the actions of the refiner.
- getXMLProducer() - Method in interface edu.isi.pegasus.planner.refiner.Refiner
-
Returns a reference to the XMLProducer, that generates the XML fragment
capturing the actions of the refiner.
- getXMLProducer() - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
Returns a reference to the XMLProducer, that generates the XML fragment
capturing the actions of the refiner.
- gftp - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
- gftp - Variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
- gk_port - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- gk_port - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- glibc - Variable in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Glibc version of the system
- GLIDEIN_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The style indicating that the submit files are to be generated for a
glidein execution.
- GLIDEIN_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The name of the class implementing the Condor GlideIN Style.
- GLIDEINWMS_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The style indicating that the submit files are to be generated for a
glideinwms execution.
- GLIDEINWMS_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The name of the class implementing the Condor GlideinWMS Style.
- GLite - Class in edu.isi.pegasus.planner.code.generator.condor.style
-
This implementation enables a job to be submitted via gLite to a
grid sites.
- GLite() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.GLite
-
The default Constructor.
- GLITE_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The style indicating that the submit files are to be generated for a
glite execution.
- GLITE_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The name of the class implementing the CondorG Style.
- globallyIgnored(String) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted
-
Returns a boolean indicating whether a site is to be ignored as a replica
source for all compute sites.
- globallyPreferred(String) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted
-
Returns a boolean indicating whether a site is a preferred replica source
for all compute sites.
- GLOBUS - Static variable in class edu.isi.pegasus.planner.classes.Profile
-
- Globus - Class in edu.isi.pegasus.planner.namespace
-
This helper class helps in handling the globus rsl key value pairs that
come through profile information for namespace Globus.
- Globus() - Constructor for class edu.isi.pegasus.planner.namespace.Globus
-
The default constructor.
- Globus(Map) - Constructor for class edu.isi.pegasus.planner.namespace.Globus
-
The overloaded constructor
- globus_loc - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- globus_loc - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- GLOBUS_SCHEDULER_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Hints
-
The globus scheduler hints key
- GLOBUS_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The style indicating that the submit files are to be generated for
a CondorG execution.
- GLOBUS_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The name of the class implementing the CondorG Style.
- GLOBUS_UNIVERSE - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The condor universe key value for vanilla universe.
- GLOBUS_VERSION - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The constant to be passed to the accessor functions to get or set the
globus version of the grid ftp server.
- GLOBUS_VERSION - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the
globus version.
- globusRSL - Variable in class edu.isi.pegasus.planner.classes.Job
-
The namespace object containing the globus rsl attributes which the user
specifies in the dax, or the pool file or the properties file.
- globusScheduler - Variable in class edu.isi.pegasus.planner.classes.Job
-
The globus Scheduler for the job.
- GlobusVersion - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes
-
This is a data class that stores the globus version installed and to be used
on a particular pool for the gridftp server or the jobmanagers.
- GlobusVersion() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
The default constructor.
- GlobusVersion(String) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
Overloaded constructor for the class;
- GlobusVersion(int, int, int) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
Constructor to set the version information
- Graph - Interface in edu.isi.pegasus.planner.partitioner.graph
-
The interface for the Graph Class.
- GraphNode - Class in edu.isi.pegasus.planner.partitioner.graph
-
Data class that allows us to construct information about the nodes
in the abstract graph.
- GraphNode() - Constructor for class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The default constructor.
- GraphNode(String, GraphNodeContent) - Constructor for class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The overloaded constructor.
- GraphNode(String, String) - Constructor for class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The overloaded constructor.
- GraphNodeContent - Interface in edu.isi.pegasus.planner.partitioner.graph
-
This inteface defines a common base for all the classes that can reside in
a GraphNode
object.
- GRAY_COLOR - Static variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
- Grid - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- GRID_DN_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The Grid DN of the user.
- GRID_JOB_TYPE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that specifies the grid job type.
- GRID_KEY - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
-
The name of the key that determines whether we keep the tmp xml file
around or not.
- GRID_RESOURCE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The condor key for designation the grid_resource.
- grid_services - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- grid_services - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- GRID_UNIVERSE - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The condor universe key value for grid universe.
- GRIDFTP - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The constant to be passed to the accessor functions to get or set the
list of GridFTP
objects for the remote site.
- GRIDFTP - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
token value for the reserved word "gridftp".
- GRIDFTP_RESOURCE - Static variable in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
The type identifying that the resource to authenticate against is a grid
ftp server.
- GRIDFTP_URL - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The constant to be passed to the accessor functions to get or set the url.
- GridFTPBandwidth - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes
-
This is a data class to store information about gridftp bandwidths between
various sites.
- GridFTPBandwidth() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- GRIDFTPBANDWIDTHINFO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- GRIDFTPINFO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
Array storing the names of the attributes that are stored with the
grid ftp server.
- GridFTPServer - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes
-
This is a data class that is used to store information about a grid ftp server.
- GridFTPServer() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The default constructor.
- GridGateway - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This class describes the Grid Gateway into a site.
- GridGateway() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
The default constructor.
- GridGateway(GridGateway.TYPE, String, GridGateway.SCHEDULER_TYPE) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
The overloaded constructor.
- GridGateway.JOB_TYPE - Enum in edu.isi.pegasus.planner.catalog.site.classes
-
An enumeration of types of jobs handled by an instance of a grid gateway.
- GridGateway.JOB_TYPE() - Constructor for enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.JOB_TYPE
-
- GridGateway.SCHEDULER_TYPE - Enum in edu.isi.pegasus.planner.catalog.site.classes
-
An enumeration of valid schedulers on the grid gateway.
- GridGateway.SCHEDULER_TYPE() - Constructor for enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.SCHEDULER_TYPE
-
- GridGateway.TYPE - Enum in edu.isi.pegasus.planner.catalog.site.classes
-
An enumeration of valid types of grid gateway.
- GridGateway.TYPE() - Constructor for enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
-
- GRIDLAUNCH - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The constant to be passed to the accessor functions to get or set the
path to kickstart.
- GRIDLAUNCH - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
token value for the reserved word "gridlaunch".
- gridstart(PrintWriter, Job, boolean) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
This function creates the stdio handling with and without gridstart.
- GridStart - Interface in edu.isi.pegasus.planner.code
-
The interface that defines how a job specified in the abstract workflow
is launched on the grid.
- gridStart(String) - Method in class edu.isi.pegasus.planner.code.GridStartFactory
-
Returns the cached implementation of GridStart from the implementing
class table.
- GRIDSTART_ARGUMENTS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key, that determines the arguments with which
the GridStart that is used to launch a job on the remote site is invoked
with.
- GRIDSTART_IMPLEMENTING_CLASSES - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The known gridstart implementations.
- GRIDSTART_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key that determines the launching executable
to be used to launch a job on the grid.
- GRIDSTART_MAINJOB_EVENT_TYPE - Static variable in class edu.isi.pegasus.planner.visualize.JobMeasurements
-
The MAINJOB data index.
- GRIDSTART_MAINJOB_EVENT_TYPE - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace
-
The MAINJOB data index.
- GRIDSTART_MAINJOB_STATE - Static variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
The state in the jobstate that is taken to designate the GRIDSTART_MAINJOB
time.
- GRIDSTART_MAINJOB_STATE - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd
-
The state in the jobstate that is taken to designate the GRIDSTART_MAINJOB
time.
- GRIDSTART_PATH_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key that designates the path to a gridstart.
- GRIDSTART_POSTJOB_EVENT_TYPE - Static variable in class edu.isi.pegasus.planner.visualize.JobMeasurements
-
The POSTJOB data index.
- GRIDSTART_POSTJOB_EVENT_TYPE - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace
-
The POSTJOB data index.
- GRIDSTART_POSTJOB_STATE - Static variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
The state in the jobstate that is taken to designate the GRIDSTART_POSTJOB
time.
- GRIDSTART_POSTJOB_STATE - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd
-
The state in the jobstate that is taken to designate the GRIDSTART_POSTJOB
time.
- GRIDSTART_PREJOB - Static variable in class edu.isi.pegasus.planner.namespace.ENV
-
The name of the environment variable that specifies the Gridstart PREJOB.
- GRIDSTART_PREJOB_EVENT_TYPE - Static variable in class edu.isi.pegasus.planner.visualize.JobMeasurements
-
The PREJOB data index.
- GRIDSTART_PREJOB_EVENT_TYPE - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace
-
The PREJOB data index.
- GRIDSTART_PREJOB_STATE - Static variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
The state in the jobstate that is taken to designate the GRIDSTART_PREJOB
time.
- GRIDSTART_PREJOB_STATE - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd
-
The state in the jobstate that is taken to designate the GRIDSTART_PREJOB
time.
- GRIDSTART_SHORT_NAMES - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The corresponding short names for the implementations.
- GridStartFactory - Class in edu.isi.pegasus.planner.code
-
An abstract factory class to load the appropriate type of GridStart
implementations, and their corresponding POSTScript classes.
- GridStartFactory() - Constructor for class edu.isi.pegasus.planner.code.GridStartFactory
-
The default constructor.
- GridStartFactoryException - Exception in edu.isi.pegasus.planner.code
-
Class to notify of failures while instantiating GridStart implementations.
- GridStartFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.code.GridStartFactoryException
-
Constructs a GridStartFactoryException
with no detail
message.
- GridStartFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.code.GridStartFactoryException
-
Constructs a GridStartFactoryException
with the specified detailed
message.
- GridStartFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.GridStartFactoryException
-
Constructs a GridStartFactoryException
with the
specified detailed message and a cause.
- GridStartFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.GridStartFactoryException
-
Constructs a GridStartFactoryException
with the
specified detailed message and a cause.
- gridTypeID - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
-
- Group - Class in edu.isi.pegasus.planner.selector.site
-
A site selector than ends up doing grouping jobs together on the basis of
an identifier specifed in the dax for the jobs, and schedules them on to the
same site.
- Group() - Constructor for class edu.isi.pegasus.planner.selector.site.Group
-
The default constructor.
- GROUP_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key in vds namespace that does the grouping.
- gsiftp_port - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- gsiftp_port - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- gsiftp_server - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- GUC - Class in edu.isi.pegasus.planner.transfer.implementation
-
The implementation that is used to create transfer jobs that callout to
the new globus-url-copy client, that support multiple file transfers
- GUC(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.GUC
-
The overloaded constructor, that is called by the Factory to load the
class.
- Gvds_Pool_Gridlaunch - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Gvds_Pool_Id - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Gvds_Pool_Lrc - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Gvds_Pool_Profile - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Gvds_Pool_Storage - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Gvds_Pool_Universe - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Gvds_Pool_WorkDir - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- m_application - Variable in class edu.isi.pegasus.planner.client.VersionNumber
-
application's own name.
- m_archmode - Variable in class edu.isi.pegasus.planner.invocation.Architecture
-
Describes the architecture runtime mode.
- m_arguments - Variable in class edu.isi.pegasus.planner.invocation.Job
-
Command-line arguments.
- m_argv - Variable in class edu.isi.pegasus.planner.invocation.ArgVector
-
This is the (new) alternative explicit argument vector.
- m_atime - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
Contains the last access time timestamp.
- m_attributeMap - Variable in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Any optional attributes associated with the PFN.
- m_autoinc - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Remembers if obtaining generated keys will work or not.
- m_autoinc - Variable in class edu.isi.pegasus.planner.catalog.work.Database
-
Remembers if obtaining generated keys will work or not.
- m_batch - Variable in class edu.isi.pegasus.planner.client.RCClient
-
Indication of batch mode.
- m_binDir - Variable in class edu.isi.pegasus.common.util.CommonProperties
-
The bin dir of the Pegasus install
- m_blksize - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
Stores the blocksize of the file.
- m_blocks - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
Stores the number of blocks of the file.
- m_chunk_factor - Variable in class edu.isi.pegasus.planner.client.RCClient
-
The number of lines that are to be parsed for chunking up large input
files.
- m_classname - Variable in class edu.isi.pegasus.common.util.DynamicLoader
-
Stores the fully qualified class name to dynamically instantiate.
- m_coarse - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
Parsing for ISO dates without milliseconds
- m_conf_property_file - Variable in class edu.isi.pegasus.planner.client.RCClient
-
Reference to the property file passed using the --conf option
- m_core - Variable in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
This flag signals, if a core file was generated.
- m_count - Variable in class edu.isi.pegasus.planner.invocation.Fifo
-
optional message count for the FIFO.
- m_ctime - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
Contains the creation time timestamp.
- m_cwd - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Working directory at startup.
- m_data - Variable in class edu.isi.pegasus.planner.invocation.StatCall
-
Optional data gleaned from stdout or stderr.
- m_dbschema - Variable in class edu.isi.pegasus.planner.invocation.SimpleServer
-
- m_depth - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
Count the depths of elements in the document
- m_derivation - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Name of the Derivation that produced this invocation.
- m_descriptor - Variable in class edu.isi.pegasus.planner.invocation.Descriptor
-
Descriptor of the file.
- m_descriptor - Variable in class edu.isi.pegasus.planner.invocation.Temporary
-
Descriptor of the file.
- m_domainname - Variable in class edu.isi.pegasus.planner.invocation.Architecture
-
Contains the optional domain name on the network.
- m_duration - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
total duration of call.
- m_duration - Variable in class edu.isi.pegasus.planner.invocation.Job
-
Duration of the job.
- m_emptyFail - Variable in class edu.isi.pegasus.planner.invocation.SimpleServer
-
- m_environment - Variable in class edu.isi.pegasus.planner.invocation.Environment
-
Mappings of keys to values
- m_environment - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Environment settings.
- m_errno - Variable in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
This is the errno value with the reason that the invocation
of the application failed.
- m_errno - Variable in class edu.isi.pegasus.planner.invocation.StatCall
-
value of errno after calling any stat function, or -1 for failure.
- m_errors - Variable in class edu.isi.pegasus.planner.client.DAXValidator
-
Counts the number of errors.
- m_escapable - Variable in class edu.isi.ikcap.workflows.util.logging.Escape
-
Defines the set of characters that require escaping.
- m_escapable - Variable in class edu.isi.pegasus.common.util.Escape
-
Defines the set of characters that require escaping.
- m_escape - Variable in class edu.isi.ikcap.workflows.util.logging.Escape
-
Defines the character used to escape characters.
- m_escape - Variable in class edu.isi.pegasus.common.util.Escape
-
Defines the character used to escape characters.
- m_executable - Variable in class edu.isi.pegasus.planner.invocation.Arguments
-
This is the executable that was run.
- m_executable - Variable in class edu.isi.pegasus.planner.invocation.CommandLine
-
This is the executable that was run.
- m_executable - Variable in class edu.isi.pegasus.planner.invocation.Job
-
Stat call of the executable.
- m_exitcode - Variable in class edu.isi.pegasus.planner.invocation.JobStatusRegular
-
This is exit code returned by the application.
- m_fatals - Variable in class edu.isi.pegasus.planner.client.DAXValidator
-
Counts the number of fatal errors.
- m_file - Variable in class edu.isi.pegasus.planner.invocation.StatCall
-
the object (fn,fd) that the stat call was taken on.
- m_filename - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Records the name of the on-disk representation.
- m_filename - Variable in class edu.isi.pegasus.planner.invocation.Regular
-
Name of the file.
- m_filename - Variable in class edu.isi.pegasus.planner.invocation.Temporary
-
Name of the file.
- m_fine - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
Parsing for ISO dates with millisecond extension.
- m_formatter - Variable in class edu.isi.pegasus.common.util.Currently
-
This is used to format the time stamp.
- m_forward - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
A Hashmap to forward resolve namespaces that were encountered
during parsing.
- m_gid - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
numerical group id of the effective user.
- m_gid - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
group id of the owner of the file.
- m_group - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
symbolical group name of the effective user.
- m_group - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
symbolical group name of the effective user.
- m_handle - Variable in class edu.isi.pegasus.planner.invocation.StatCall
-
optional handle for stat calls of the invocation record
- m_hexbyte - Variable in class edu.isi.pegasus.planner.invocation.File
-
optional first 16 byte of file, or less if shorter.
- m_hostaddr - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
host address where gridlaunch ran (primary interface).
- m_hostname - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Symbolic hostname where gridlaunch ran (primary interface).
- m_identifiers - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- m_idrss - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
integral unshared data size, or private integral resident set size.
- m_in - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner
-
Stores the stream from which we are currently scanning.
- m_inblock - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
block input operations.
- m_info - Variable in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
The List of MachineInfo
elements associated with the machine.
- m_inode - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
We store the inode number, which let's us reference a file uniquely
per filesystem.
- m_instance - Static variable in class edu.isi.pegasus.common.util.CommonProperties
-
implements the singleton access via class variable.
- m_interface - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Symbolic name of primary interface we used to determine host-name and -address.
- m_isrss - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
integral stoack size.
- m_ixrss - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
integral shared memory size.
- m_job - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Job records: prejob, main job, postjob
- m_jobStatus - Variable in class edu.isi.pegasus.planner.invocation.Status
-
This member variable contains the real status of the job.
- m_key - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
- m_key - Variable in class edu.isi.pegasus.planner.invocation.EnvEntry
-
environment handle
- m_key - Variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
- m_lfn - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Maintains a memory slurp of the file representation.
- m_lfn - Variable in class edu.isi.pegasus.planner.invocation.StatCall
-
optional logical filename associated with this stat call
- m_lineno - Variable in exception edu.isi.pegasus.planner.parser.ScannerException
-
- m_location - Variable in class edu.isi.pegasus.planner.client.DAXValidator
-
Keep the location within the document.
- m_location - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
Keep the location within the document
- m_log - Variable in class edu.isi.pegasus.planner.client.RCClient
-
Our own logger.
- m_log - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
Obtain our logger once for multiple uses.
- m_logger - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser
-
The handle to the logger used to log messages.
- m_lookAhead - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser
-
Stores the look-ahead symbol.
- m_lookAhead - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner
-
Captures the look-ahead character.
- m_machine - Variable in class edu.isi.pegasus.planner.invocation.Architecture
-
Contains the machine's hardware description.
- m_machine - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
The Machine object capturing machine information.
- m_majflt - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
major page faults - incurred subsystem IO, sometimes includes swap.
- m_maxrss - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
maximum resident set size.
- m_minflt - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
minor page faults - sometimes also recovered pages.
- m_mode - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
Is the number for the file mode.
- m_msgrcv - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
messages received.
- m_msgsnd - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
messages sent.
- m_mtime - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
Contains the last modification time timestamp;
- m_name - Variable in class edu.isi.pegasus.planner.parser.IVSElement
-
- m_namespace - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
- m_namespace - Variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
- m_next_exception - Variable in exception edu.isi.pegasus.planner.catalog.CatalogException
-
chains the next exception into line.
- m_nivcsw - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
involuntary conext switches.
- m_nlink - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
Stores the number of hard links to the file.
- m_noDBase - Variable in class edu.isi.pegasus.planner.invocation.SimpleServer
-
- m_nodename - Variable in class edu.isi.pegasus.planner.invocation.Architecture
-
Describes the machine's network node hostname.
- m_nsignals - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
number of signals sent to process.
- m_nswap - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
number of swap operations - unused in Linux unless kernel patched.
- m_nvcsw - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
voluntary context switches.
- m_obj - Variable in class edu.isi.pegasus.planner.parser.IVSElement
-
- m_outblock - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
block output operations.
- m_pagesize - Variable in class edu.isi.pegasus.planner.invocation.Machine
-
The only attribute to the machine element is required.
- m_parser - Variable in class edu.isi.pegasus.planner.invocation.SimpleServer
-
- m_parser - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
- m_pconfig - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
- m_pconfig - Variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
- m_pegasus_props - Variable in class edu.isi.pegasus.planner.client.RCClient
-
The object holding all the properties pertaining to Pegasus.
- m_pfn - Variable in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
The physical filename.
- m_pid - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
process id of gridlaunch itself.
- m_pid - Variable in class edu.isi.pegasus.planner.invocation.Job
-
Process id assigned to the job.
- m_pmem - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Records the physical memory on the remote machine, if available.
- m_pool_info - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
- m_pool_info - Variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
- m_position - Variable in exception edu.isi.pegasus.common.util.ProfileParserException
-
Remembers the position that cause the exception to be thrown.
- m_position - Variable in class edu.isi.pegasus.planner.invocation.ArgEntry
-
argument vector position
- m_prefs - Variable in class edu.isi.pegasus.planner.client.RCClient
-
Maintains instance-local settings on user preferences.
- m_props - Variable in class edu.isi.pegasus.common.util.CommonProperties
-
internal set of properties.
- m_quote - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Records the quoting mode for LFNs and PFNs.
- m_rc - Variable in class edu.isi.pegasus.planner.client.RCClient
-
Maintains the interface to the replica catalog implementation.
- m_reader - Variable in class edu.isi.pegasus.planner.client.DAXValidator
-
- m_readonly - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
A boolean indicating whether the catalog is read only or not.
- m_release - Variable in class edu.isi.pegasus.planner.invocation.Architecture
-
Contains the operating system's version string.
- m_remote - Variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
-
- m_resource - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Resource, site or pool at which the jobs was run.
- m_result - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
Holds the result, will be overwritten by each invocation of parse().
- m_reverse - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
A Hashmap to reverse resolve namespaces that were encountered
during parsing.
- m_rls_logger - Variable in class edu.isi.pegasus.planner.client.RCClient
-
Logger for RLS implementation for the time being.
- m_root - Static variable in class edu.isi.pegasus.planner.client.RCClient
-
Keeps track of log4j's root logger as singleton.
- m_rsize - Variable in class edu.isi.pegasus.planner.invocation.Fifo
-
optional number of bytes read from FIFO.
- m_scanner - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser
-
The access to the lexical scanner is stored here.
- m_schemaDir - Variable in class edu.isi.pegasus.common.util.CommonProperties
-
Location of our schemas
- m_schemafile - Variable in class edu.isi.pegasus.planner.client.DAXValidator
-
what is the name of the schema file in the filename hint?
- m_server - Variable in class edu.isi.pegasus.planner.invocation.SimpleServer
-
- m_server - Variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
-
- m_sharedStateDir - Variable in class edu.isi.pegasus.common.util.CommonProperties
-
GNU: modifiable architecture-independent data in DIR [PREFIX/share/pegasus].
- m_signo - Variable in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
This is the signal number that led to the process termination.
- m_signo - Variable in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
This is the signal number that led to the suspension.
- m_size - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
Denotes the size of the file.
- m_socket - Variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
-
- m_specific - Variable in class edu.isi.pegasus.planner.invocation.Machine
-
This is a grouping element for the remaining machine-specific
items.
- m_stack - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
A stack of namespaces?
- m_stamp - Variable in class edu.isi.pegasus.planner.invocation.Machine
-
The time when the snapshot was taken.
- m_start - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
start of gridlaunch timestamp.
- m_start - Variable in class edu.isi.pegasus.planner.invocation.Job
-
Start time of this job.
- m_stat - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Array with stat() and fstat() information about various files.
- m_statinfo - Variable in class edu.isi.pegasus.planner.invocation.StatCall
-
the stat information itself, only present for unfailed calls.
- m_status - Variable in class edu.isi.pegasus.planner.invocation.Job
-
Exit condition of the job.
- m_status - Variable in class edu.isi.pegasus.planner.invocation.Status
-
The raw exit code, unparsed and unprepared.
- m_stime - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
system time - time spent in system mode, seconds with fraction.
- m_symbolTable - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
Singleton implementation of a symbol table for reserved words.
- m_sysConfDir - Variable in class edu.isi.pegasus.common.util.CommonProperties
-
GNU: read-only single-machine data in DIR [PREFIX/etc].
- m_sysname - Variable in class edu.isi.pegasus.planner.invocation.Architecture
-
Describes the operating system name.
- m_tag - Variable in class edu.isi.pegasus.planner.invocation.Job
-
This is the tag to produce the job for.
- m_tag - Variable in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
This is the tag to group the machine-specific information.
- m_total_lines_succ_worked - Variable in class edu.isi.pegasus.planner.client.RCClient
-
The total number of lines on which the client has successfully worked on
till yet.
- m_total_lines_worked - Variable in class edu.isi.pegasus.planner.client.RCClient
-
The total number of lines on which the client has worked on till yet.
- m_transformation - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Name of the: Transformation that produced this invocation.
- m_truncated - Variable in class edu.isi.pegasus.planner.invocation.Data
-
Indicates, if the data is only partial.
- m_uid - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
numerical user id of the effective user.
- m_uid - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
user id of the owner of the file.
- m_umask - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Currently active umask while kickstart was executing.
- m_uname - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Architectural information.
- m_uname - Variable in class edu.isi.pegasus.planner.invocation.Machine
-
The uname child element is mandatory.
- m_usage - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Total resource consumption by gridlaunch and all siblings.
- m_usage - Variable in class edu.isi.pegasus.planner.invocation.Job
-
Resource usage of this job.
- m_usage1 - Static variable in class edu.isi.pegasus.planner.client.ExitCode
-
Just a string to denote the short usage.
- m_user - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
symbolical user name of the effective user.
- m_user - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
symbolical user name of the effective user.
- m_utime - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
user time - time spent in user mode, seconds with fraction.
- m_value - Variable in class edu.isi.pegasus.planner.invocation.Architecture
-
This is the data contained between the tags.
- m_value - Variable in class edu.isi.pegasus.planner.invocation.ArgEntry
-
argument vector value
- m_value - Variable in class edu.isi.pegasus.planner.invocation.ArgString
-
This is the data contained between the tags.
- m_value - Variable in class edu.isi.pegasus.planner.invocation.CommandLine
-
This is the data contained between the tags.
- m_value - Variable in class edu.isi.pegasus.planner.invocation.Data
-
This is the data contained between the tags.
- m_value - Variable in class edu.isi.pegasus.planner.invocation.EnvEntry
-
environment value
- m_value - Variable in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
This is the data contained between the tags.
- m_value - Variable in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
This is the signal name or message contained between the tags.
- m_value - Variable in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
This is the data contained between the tags.
- m_value - Variable in class edu.isi.pegasus.planner.invocation.WorkingDir
-
This is the data contained between the tags.
- m_value - Variable in class edu.isi.pegasus.planner.parser.tokens.Identifier
-
This instance variable captures the token value for the reserved word.
- m_value - Variable in class edu.isi.pegasus.planner.parser.tokens.QuotedString
-
This instance variable captures the token value for the quoted string.
- m_value - Variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
This instance variable captures the token value for the reserved word.
- m_verbose - Variable in class edu.isi.pegasus.planner.client.DAXValidator
-
How verbose should we be?
- m_version - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
protocol version information.
- m_warnings - Variable in class edu.isi.pegasus.planner.client.DAXValidator
-
Counts the number of warnings.
- m_wf_label - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Workflow label, currently optional?
- m_wf_stamp - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Workflow timestamp to make the label more unique.
- m_wsize - Variable in class edu.isi.pegasus.planner.invocation.Fifo
-
optional number of bytes written - but not to the FIFO.
- mAbstractChildID - Variable in class edu.isi.pegasus.planner.classes.PCRelation
-
The abstract id for the child node.
- mAbstractDag - Variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The abstract DAG.
- mAbstractGraph - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
The map containing the a graph node for each of the jobs referred to in
the dax.
- mAbstractParentID - Variable in class edu.isi.pegasus.planner.classes.PCRelation
-
The abstract id for the parent node.
- Machine - Class in edu.isi.pegasus.planner.invocation
-
The Machine element groups a time stamp, the page size, the generic
utsname information, and a machine-specific content collecting element.
- Machine() - Constructor for class edu.isi.pegasus.planner.invocation.Machine
-
Default constructor.
- MACHINE_ATTRIBUTE_KEY - Static variable in class edu.isi.pegasus.planner.invocation.Uname
-
The release attribute for the uname
- MACHINE_INFO_PREFIX - Static variable in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
The prefix for machine information keys
- MachineInfo - Class in edu.isi.pegasus.planner.invocation
-
An abstract class that is used for all the child elements that appear
in the machine element.
- MachineInfo() - Constructor for class edu.isi.pegasus.planner.invocation.MachineInfo
-
Default constructor.
- MachineSpecific - Class in edu.isi.pegasus.planner.invocation
-
This class collects the various OS-specific elements that we are capturing
machine information for.
- MachineSpecific(String) - Constructor for class edu.isi.pegasus.planner.invocation.MachineSpecific
-
Default constructor.
- mAddJobsDeleted - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
the jobs which are deleted due
to the application of the
Reduction algorithm.
- mAddNodesForSettingXBit - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
A boolean indicating whether chmod jobs should be created that set the
xbit in case of executable staging.
- mAddNodesForSettingXBit - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
A boolean indicating whether chmod jobs should be created that set the
xbit in case of executable staging.
- mAdjFName - Variable in class edu.isi.pegasus.planner.parser.Parser
-
Boolean flag to ensure that two adjacent filenames are separated by a
whitespace.
- mAggregatorTable - Static variable in class edu.isi.pegasus.planner.namespace.Globus
-
The table that maps the various globus profile keys to their aggregator
functions.
- main(String[]) - Static method in class edu.isi.ikcap.workflows.util.logging.Escape
-
Test program.
- main(String[]) - Static method in class edu.isi.pegasus.common.logging.TestLogFormatter
-
- main(String[]) - Static method in class edu.isi.pegasus.common.util.CommonProperties
-
- main(String[]) - Static method in class edu.isi.pegasus.common.util.CondorVersion
-
The main program to test.
- main(String[]) - Static method in class edu.isi.pegasus.common.util.Escape
-
Test program.
- main(String[]) - Static method in class edu.isi.pegasus.common.util.FindExecutable
-
Test function for the class
- main(String[]) - Static method in class edu.isi.pegasus.common.util.ProfileParser
-
Test program.
- main(String[]) - Static method in class edu.isi.pegasus.common.util.Separator2Test
-
- main(String[]) - Static method in class edu.isi.pegasus.common.util.SeparatorTest
-
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
-
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.replica.TestReplicaCatalog
-
The main program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.CreateSampleSiteCatalog
-
The main program
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.test.TestMyOSG
-
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.TestSiteCatalog
-
The main program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.site.TestSiteCatalog
-
The main program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.site.TestVORSSiteCatalog
-
The main program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TestTransformationCatalog
-
The main program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.CPlanner
-
The main program for the CPlanner.
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.DAXValidator
-
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.ExitCode
-
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.NetloggerExitcode
-
The main program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.PartitionDAX
-
The main function of the class, that is invoked by the jvm.
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.PegasusGetSites
-
The main program
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.PlotNodeUsage
-
The main program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.PlotSpaceUsage
-
The main program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.RankDAX
-
The main program for the CPlanner.
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.RCClient
-
Manipulate entries in a given replica catalog implementation.
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.SCClient
-
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.TCClient
-
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.TCConverter
-
The main function
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
The main test program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.VersionNumber
-
- main(String[]) - Static method in class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser
-
A Test program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.dax.ADAG
-
Create an example DIAMOND DAX
- main(String[]) - Static method in class edu.isi.pegasus.planner.invocation.SimpleServer
-
- main(String[]) - Static method in class edu.isi.pegasus.planner.namespace.TestNamespace
-
- main(String[]) - Static method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The main program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
- main(String[]) - Static method in class edu.isi.pegasus.planner.parser.IVPTest
-
- main(String[]) - Static method in class edu.isi.pegasus.planner.parser.SiteCatalogParser
-
- main(String[]) - Static method in class edu.isi.pegasus.planner.parser.TestDAXParser
-
The main program to TestDAXParser.
- main(String[]) - Static method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Test function.
- main(String[]) - Static method in class edu.isi.pegasus.planner.provisioner.Estimator
-
- main(String[]) - Static method in class edu.isi.pegasus.planner.ranking.GetDAX
-
For Testing purposes only.
- main(String[]) - Static method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The main program that allows you to test.
- main(String[]) - Static method in class edu.isi.pegasus.planner.transfer.TestTPT
-
- main(String[]) - Static method in class edu.isi.pegasus.planner.visualize.spaceusage.KickstartOutputFilenameFilter
-
- main(String[]) - Static method in class ShowProperties
-
Runs the main program.
- MainEngine - Class in edu.isi.pegasus.planner.refiner
-
The central class that calls out to the various other components of Pegasus.
- MainEngine(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.MainEngine
-
This constructor initialises the class variables to the variables
passed.
- MAINJOB_MARKER - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
The marker for the MAINJOB.
- MAJOR - Static variable in class edu.isi.pegasus.common.util.Version
-
This constant defines the major version number.
- MAJOR - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
The constant for the major version type.
- major - Variable in class VersionTask
-
member variable to obatain the major version number.
- makeAbstractAggregatedJobConcrete(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Enables the abstract clustered job for execution and converts it to it's
executable form
- makeAbstractAggregatedJobConcrete(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Enables the abstract clustered job for execution and converts it to it's
executable form.
- makeAbstractAggregatedJobConcrete(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Enables the abstract clustered job for execution and converts it to it's
executable form.
- makeAbstractAggregatedJobConcrete(AggregatedJob) - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator
-
Enables the abstract clustered job for execution and converts it to it's
executable form
- makeCreateDirJob(String, String, String) - Method in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
It creates a make directoryURL job that creates a directoryURL on the remote pool
using the perl executable that Gaurang wrote.
- makeCreateDirJob(String, String, String) - Method in interface edu.isi.pegasus.planner.refiner.createdir.Implementation
-
It creates a make directory job that creates a directory on the remote pool
using the perl executable that Gaurang wrote.
- makeDummyConcatJob(ADag) - Method in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
It creates a dummy concat job that is run at the local submit host.
- makeRCRegNode(String, Job, Collection) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
It constructs the Job object for the registration node, which
registers the materialized files on the output pool in the RLS.
- makeRedDagObject(ADag, Vector) - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
makes the Reduced Dag object which
corresponding to the deleted jobs
which are specified.
- makeRemoveDirJob(String, String) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
It creates a remove directory job that creates a directory on the remote pool
using the perl executable that Gaurang wrote.
- makeRemoveDirJob(String, String, List<String>) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
It creates a remove directory job that creates a directory on the remote pool
using the perl executable that Gaurang wrote.
- makeUntarJob(String, String, String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
It creates a untar job , that untars the worker package that is staged
by the setup transfer job.
- MALFORMED_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Namespace
-
Either the key or the value specified is null or malformed.
- malformedKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Warns about a namespace profile key-value pair that is malformed.
- mAliases - Variable in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Set of alias names to be used for lookup.
- mAllDeletedJobs - Variable in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
List of all deleted jobs during workflow reduction.
- mAllDeletedJobs - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
all deleted jobs.
- map(String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Helper function to map prefixes correctly onto the elements.
- MapGraph - Class in edu.isi.pegasus.planner.partitioner.graph
-
An implementation of the Graph that is backed by a Map.
- MapGraph() - Constructor for class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
The default constructor.
- MapGraph.MapGraphIterator - Class in edu.isi.pegasus.planner.partitioner.graph
-
An inner iterator class that traverses through the Graph.
- MapGraph.MapGraphIterator() - Constructor for class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator
-
The default constructor.
- mapJob(Job, List) - Method in class edu.isi.pegasus.planner.selector.site.AbstractPerJob
-
Maps a job in the workflow to the various grid sites.
- mapJob(Job, List) - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
Calls out to the external site selector.
- mapJob(Job, List) - Method in class edu.isi.pegasus.planner.selector.site.Random
-
Maps a job in the workflow to an execution site.
- mapJob(Job, List) - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin
-
Maps a job in the workflow to an execution site.
- mapJob2ExecPool(Job, List) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The call out to the site selector to determine on what pool the job
should be scheduled.
- Mapper - Class in edu.isi.pegasus.planner.catalog.transformation
-
This is an interface for generating valid TC maps which will be used for
executable staging.
- Mapper(PegasusBag) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
The private constructor.
- mapWorkflow(ADag, List) - Method in class edu.isi.pegasus.planner.selector.site.Abstract
-
Maps the jobs in the workflow to the various grid sites.
- mapWorkflow(Graph, List) - Method in class edu.isi.pegasus.planner.selector.site.AbstractPerJob
-
Maps the jobs in the workflow to the various grid sites.
- mapWorkflow(Graph, List) - Method in class edu.isi.pegasus.planner.selector.site.Group
-
The call out to map a list of jobs on to the execution pools.
- mapWorkflow(ADag, List) - Method in class edu.isi.pegasus.planner.selector.site.Heft
-
Maps the jobs in the workflow to the various grid sites.
- mapWorkflow(Graph, List) - Method in class edu.isi.pegasus.planner.selector.site.Heft
-
Maps the jobs in the workflow to the various grid sites.
- mapWorkflow(Graph, List, String) - Method in class edu.isi.pegasus.planner.selector.site.Heft
-
Maps the jobs in the workflow to the various grid sites.
- mapWorkflow(ADag, List) - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
Maps the jobs in the workflow to the various grid sites.
- mapWorkflow(Graph, List) - Method in interface edu.isi.pegasus.planner.selector.SiteSelector
-
Maps the jobs in the workflow to the various grid sites.
- mapWorkflow(ADag, List) - Method in interface edu.isi.pegasus.planner.selector.SiteSelector
-
Maps the jobs in the workflow to the various grid sites.
- mArch - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
An optional architecture type for the grid gateway.
- mArch - Variable in class edu.isi.pegasus.planner.dax.Executable
-
Architecture the executable is compiled for
- mArchitecture - Variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
The architecture.
- mArchType - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The architecture type of the remote machines to which the jobmanager
talks to.
- mArguments - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
-
- mArgumentTag - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
- mAssignDefaultJobPriorities - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Boolean indicating whether to assign job priorities or not.
- mAssociatedJob - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement
-
The jobname for which the reading was taken.
- mAssociatedJob - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
The jobname for which the reading was taken.
- matches() - Method in class edu.isi.pegasus.common.util.Version
-
Determines, if the compiled version and the installed version
match.
- matches(String) - Method in class edu.isi.pegasus.planner.selector.replica.Regex.Rank
-
Matches a string against the compiled regex expression
- matchForStarProperties(String) - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Returns a matching pegasus property for a VDS star property.
- matchingSubset(String, boolean) - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Extracts a specific property key subset from the known properties.
- matchingSubset(Properties, String, boolean) - Static method in class edu.isi.pegasus.common.util.CommonProperties
-
Extracts a specific property key subset from the properties passed.
- matchingSubset(Properties, String, boolean) - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Extracts a specific property key subset from the known properties.
- matchingSubset(String, boolean) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Extracts a specific property key subset from the known properties.
- matchMe(ReplicaCatalogEntry, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Attempts to see, if all keys in the partial replica catalog entry are
contained in the full replica catalog entry.
- mAttributeMap - Variable in class edu.isi.pegasus.planner.invocation.MachineInfo
-
An internal maps that is indexed by attribute keys.
- mAttributes - Variable in class edu.isi.pegasus.common.util.XMLWriter
-
- mAuthenticate - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Whether to attempt authentication against the jobmanagers for the pools
specified at runtime.
- mAverageCommunicationCost - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The average communication cost between nodes.
- mAvgComputeTime - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The average compute time for a node.
- MAX - Class in edu.isi.pegasus.planner.namespace.aggregator
-
An implementation of the Aggregator interface that takes the maximum of the
profile values.
- MAX() - Constructor for class edu.isi.pegasus.planner.namespace.aggregator.MAX
-
- max - Variable in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
-
- max_bandwidth - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- Max_Bandwidth - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- MAX_BW - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- MAX_COUNT - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the
maximum number of jobs that can be in the queue.
- MAX_CPU_TIME - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the
maxwalltime for the jobs.
- MAX_KEYS_PREFIX - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The prefix for the max keys
- MAX_NUMBER_OF_VERSION_COMPONENTS - Static variable in class edu.isi.pegasus.common.util.CondorVersion
-
The maximum number of components version can have.
- MAX_RUN_TIME - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that if set in the Pegasus namespace specifies the
maximum amount of time for which a cluster should run.
- MAX_VERSION_PRECISION - Static variable in class edu.isi.pegasus.common.util.CondorVersion
-
The maximum number of digits each component of version can have.
- MAXIDLE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The key name for max idle setting for dagman
- MAXIMUM_FINISH_TIME - Static variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The maximum finish time possible for a job.
- maxIndex - Variable in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
-
- MAXJOBS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The key name for max jobs setting for dagman
- MAXPOST_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The key name for max post setting for dagman
- MAXPRE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The key name for max pre setting for dagman
- mBag - Variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
Handle to the PegasusBag
- mBag - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML3
-
The bag of Pegasus Initialization objects
- mBag - Variable in class edu.isi.pegasus.planner.client.CPlanner
-
The object containing the bag of pegasus objects
- mBag - Variable in class edu.isi.pegasus.planner.client.RankDAX
-
The bag of objects that Pegasus requires.
- mBag - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Bag of initialization objects.
- mBag - Variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
The bag of initialization objects
- mBag - Variable in class edu.isi.pegasus.planner.code.generator.Abstract
-
The bag of initialization objects.
- mBag - Variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The bag of initialization objects.
- mBag - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Bag of Pegasus objects
- mBag - Variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
The bag of initialization objects.
- mBag - Variable in class edu.isi.pegasus.planner.code.generator.Metrics
-
The bag of initialization objects.
- mBag - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The bag of initialization objects.
- mBag - Variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The bag of initialization objects.
- mBag - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
- mBag - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
- mBag - Variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The bag of objects used for initialization.
- mBag - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
A Bag of objects that maybe associated with the node.
- mBag - Variable in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan
-
Bag of Pegasus objects
- mBag - Variable in class edu.isi.pegasus.planner.ranking.Rank
-
The pegasus bag.
- mBag - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
The bag of initialization objects
- mBag - Variable in class edu.isi.pegasus.planner.refiner.NodeCollapser
-
The bag of initialization objects.
- mBag - Variable in class edu.isi.pegasus.planner.selector.site.Abstract
-
The bag of Pegasus objects.
- mBandWidths - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
- mBaseDir - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The base submit directory.
- mBaseDir - Variable in class edu.isi.pegasus.planner.client.RankDAX
-
The base directory where the ranked daxes are kept.
- mBasename - Variable in class edu.isi.pegasus.planner.client.PlotNodeUsage
-
The default basename given to the files.
- mBasename - Variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage
-
The default basename given to the files.
- mBasename - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus
-
The basename of the files.
- mBasename - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus
-
The basename of the files.
- mBasenamePrefix - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The basename prefix that is to be given to the per workflow file, like
the log file, the .dag file, the .cache files etc.
- mBaseSubmitDirectory - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The base submit directory where the files are being created.
- mBoolean - Variable in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag
-
The boolean value
- mBuffer - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments
-
Handle to a job arguments to handle mixed content.
- mBundles - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer
-
The list of Chain
object.
- mCacheFiles - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Set of cache files that need to be used, to determine the location of the
transiency files.
- mCacheStore - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The replica store in which we store all the results that are queried from
the cache replica catalogs.
- mCallback - Variable in class edu.isi.pegasus.common.util.StreamGobbler
-
The callback to be used.
- mCallback - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The handle to the class implementing the callback interface.
- mCallback - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Handle to the callback
- mCallback - Variable in class edu.isi.pegasus.planner.parser.PDAXParser
-
The callback handler to which the callbacks are sent during designated
points of parsing the pdax.
- mCallback - Variable in class edu.isi.pegasus.planner.visualize.KickstartParser
-
The callback object.
- mCapacity - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
The maximum number of transfer jobs that are allowed for this
particular pool.
- mCapacity - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer
-
The maximum number of transfer jobs that are allowed for this
particular site.
- mCatalog - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites
-
- mChain - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain.TransferChain
-
The linked list that maintians the chain of names of the transfer
jobs.
- mChild - Variable in class edu.isi.pegasus.planner.parser.PDAXParser
-
The current child.
- mChildren - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The list of children of the job/node in the abstract graph.
- mChmodDisabledForAllSites - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
A boolean indicating whether chmod is disabled for all sites.
- mChmodOnExecutionSiteMap - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
A map indexed by the execution site and value is the path to chmod on
that site.
- mClassname - Variable in exception edu.isi.pegasus.common.util.FactoryException
-
The name of the class that was trying to be instantiated when this
error occured, or some other signifier like module name.
- mCleanup - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
A boolean indicating whether to do cleanup or not.
- mCleanupDag - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The cleanup dag for the final concrete dag.
- mCleanupScope - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The cleanup scope for the workflows.
- mCleanupScope - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The cleanup scope for the workflows.
- mCleanupSpace - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
Indicates whether the space denoted is the amount of space
cleaned up.
- mClosedElement - Variable in class edu.isi.pegasus.common.util.XMLWriter
-
- mClusteredADag - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The handle to the ADag object that contains the workflow being
clustered.
- mClusteredRelations - Variable in class edu.isi.pegasus.planner.cluster.Abstract
-
The collection of relations, that is constructed for the clustered
workflow.
- mClusterer - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Denotes what type of clustering needs to be done
- mClusterer - Variable in class edu.isi.pegasus.planner.partitioner.ClustererCallback
-
The handle to the clusterer that does the clustering.
- mClustererTable - Static variable in class edu.isi.pegasus.planner.cluster.ClustererFactory
-
The table that maps a clustering technique to a clustering impelemntation.
- mCollapseMap - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
Map to hold the collapse values for the various execution pools.
- mCollectorHost - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The collector host to query to.
- mColor - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The color the node is colored.
- mCompiledPatterns - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Stores compiled patterns at first use, quasi-Singleton.
- mCompoundTransformations - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Map of Compound Transfomations indexed by complete name of the compound
transformation.
- mConcDAG - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The handle to the workflow that is being enabled.
- mConcDag - Variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The concrete dag so far, for which the clean up dag needs to be generated.
- mConcreteWorkflow - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The workflow for which the code has to be generated.
- mCondorStatusError - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The List storing the stderr of condor-status.
- mCondorStatusOutput - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The List storing the output of condor-status.
- mCondorVersion - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The long value of condor version.
- mCondorVersion - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The long value of condor version.
- mCondorVersion - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The long value of condor version.
- mConnected - Variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
-
A boolean variable tracking whether catalog is connected or not
- mConnection - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Maintains the connection to the database over the lifetime of
this instance.
- mConnection - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Maintains the connection to the database over the lifetime of
this instance.
- mConnection - Variable in class edu.isi.pegasus.planner.catalog.work.Database
-
Maintains the connection to the database over the lifetime of
this instance.
- mConnection - Variable in class edu.isi.pegasus.planner.ranking.GetDAX
-
Maintains the connection to the database over the lifetime of
this instance.
- mConnectionError - Static variable in class edu.isi.pegasus.planner.catalog.work.Database
-
This message is sent whenever one of the member function is executed
which relies on an established database context.
- mConnectionParams - Variable in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Collection of connection parameters to use for connecting to that replica
catalog.
- mConstituentJobs - Variable in class edu.isi.pegasus.planner.classes.AggregatedJob
-
The collection of jobs that are contained in the aggregated job.
- mContact - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
The contact string for the grid gateway.
- mContent - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The content associated with this node.
- mCount - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
The Count of the number of dax objects : N
- mCount - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback
-
The number of times the word appears.
- mCreateEng - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The engine that ends up creating random directories in the remote
execution pools.
- mCreateRegistrationJobs - Variable in class edu.isi.pegasus.planner.transfer.refiner.Default
-
Boolean indicating whether to create registration jobs or not.
- mCredentialFactory - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
Handler to the Credential Handler factory.
- mCredentialFactory - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
Handle to the Credential Handler Factory
- mCredentialsType - Variable in class edu.isi.pegasus.planner.classes.Job
-
Set of credential types required by a job.
- mCStatements - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
The statement to prepare to slurp attributes.
- mCStatements - Static variable in class edu.isi.pegasus.planner.catalog.work.Database
-
The statement to prepare to slurp attributes.
- mCStatements - Static variable in class edu.isi.pegasus.planner.ranking.GetDAX
-
The statement to prepare to slurp attributes.
- mCurrentChildId - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
These store the current child element for the child parent relationship.
- mCurrentDag - Variable in class edu.isi.pegasus.planner.refiner.CreateDirectory
-
It is a reference to the Concrete Dag so far.
- mCurrentDag - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
It is a reference to the Concrete Dag so far.
- mCurrentDepth - Variable in class edu.isi.pegasus.planner.parser.PDAXParser
-
The current depth of parsing through the xml structure.
- mCurrentDepth - Variable in class edu.isi.pegasus.planner.partitioner.BFS
-
The current depth of the nodes that are being traversed in the BFS.
- mCurrentDepth - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator
-
The current depth of the nodes that are being traversed in the BFS.
- mCurrentJobSubInfo - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Holds information regarding the current job being parsed.
- mCurrentLevel - Variable in class edu.isi.pegasus.planner.selector.site.RoundRobin
-
The current level in the abstract workflow.
- mCurrentNum - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook
-
The number of jobs about which the callback interface has knowledge.
- mCurrentNum - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook
-
The number of jobs about which the callback interface has knowledge.
- mCurrentProcessorIndex - Variable in class edu.isi.pegasus.planner.selector.site.heft.Site
-
The index to the processor that is to be used for scheduling a job.
- mCurrentSILevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
The current level of the jobs being traversed.
- mCurrentSOLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The current level of the jobs being traversed.
- mDAG - Variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
ADag object containing the jobs that have been scheduled by the site
selector.
- mDAG - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
- mDAG - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
- mDAG - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
- mDAG - Variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The workflow object.
- mDag - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
ADag object corresponding to the Dag whose jobs we want to schedule.
- mDag - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The DAG being worked upon.
- mDag - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The DAG object to which the transfer nodes are to be added.
- mDAG - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The ADag object associated with the Dag.
- mDAGFile - Variable in class edu.isi.pegasus.planner.classes.DAGJob
-
The DAG File that the job refers to.
- mDagInfo - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
The DAGInfo object which contains information corresponding to the ADag in
the XML file.
- mDAGLFN - Variable in class edu.isi.pegasus.planner.classes.DAGJob
-
The DAG LFN.
- mDAGLFN - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The file attribute encountered in the dag element.
- mDAGManKnobs - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Any extra arguments that need to be passed to dagman, as determined
from the properties file.
- mDagWriter - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The file handle to the .dag file.
- mDAGWriter - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The print writer handle to DAG file being written out.
- mDatabase - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The database type.
- mDatabaseAbsolutePath - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Stores the absolute path to the mysql home directory
- mDatabaseHost - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Stores the database host name
- mDatabaseHost - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The database host .
- mDatabaseName - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Stores the database name
- mDatabaseName - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The database name.
- mDatabasePassword - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The database user password.
- mDatabaseTC - Static variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
- mDatabaseURL - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The database type.
- mDatabaseUserName - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The database user name.
- mDate - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Stores the time at which the planning process started.
- mDate - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement
-
Holds the timestamp when usage was taken.
- mDate - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
Holds the timestamp when usage was taken.
- mDAXFile - Variable in class edu.isi.pegasus.planner.classes.DAXJob
-
The DAX File that the job refers to.
- mDAXFile - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The dax file which contains the abstract dag.
- mDAXFile - Variable in class edu.isi.pegasus.planner.client.PartitionDAX
-
The path to the dax file that is to be partitioned.
- mDaxFile - Variable in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
The dax file that is being partitioned.
- mDAXInMemory - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook
-
The flag to identify that dax is in memory.
- mDAXJobIDToSubmitDirectoryCacheFile - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Maps a sub dax job id to it's submit directory.
- mDAXLabel - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The label of the dax.
- mDAXLFN - Variable in class edu.isi.pegasus.planner.classes.DAXJob
-
The DAX LFN.
- mDAXLFN - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The file attribute encountered in the dax element.
- mDAXMTime - Variable in class edu.isi.pegasus.planner.classes.DagInfo
-
Keeps the last modified time of the DAX.
- mDAXPath - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The path to the DAX that was planned by the workflow.
- mDAXReplicaStore - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The DAX Replica Store.
- mDaxSchemaVersion - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
- mDAXTransformationStore - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Handle to the transformation store that stores the transformation catalog
user specifies in the DAX
- mDAXVersion - Variable in class edu.isi.pegasus.planner.classes.DagInfo
-
The DAX Version
- mDAXWriter - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
The handle to the dax writer that writes out the dax corresponding to the
partition identified.
- mDebugLevel - Variable in class edu.isi.pegasus.common.logging.LogManager
-
The debug level.
- mDeepStorageStructure - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
A boolean indicating whether to have a deep directory structure for
the storage directory or not.
- mDeepStorageStructure - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
A boolean indicating whether to have a deep directory structure for
the storage directory or not.
- mDeepStorageStructure - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
A boolean indicating whether to have a deep directory structure for
the storage directory or not.
- mDefaultAggregator - Static variable in class edu.isi.pegasus.planner.namespace.Globus
-
The default aggregator to be used for profile aggregation, if none specified
in the aggregator table;
- mDefaultBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.BundleValue
-
The default bundle value to use.
- mDefaultCallback - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
An instance of the default stream gobbler callback implementation that
is used for creating symbolic links.
- mDefaultGroup - Static variable in class edu.isi.pegasus.planner.selector.site.Group
-
The name of the group into which jobs are grouped if no group is
specified in the dax.
- mDefaultPoolFile - Variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The default path to the pool file.
- mDefaultProfileKey - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.BundleValue
-
The Default Pegasus profile key to use for lookup
- mDefaultTC - Variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The default path to the transformation catalog.
- mDefaultTCRCCreated - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
A boolean indicating whether the attempt to create a default tc entry
has happened or not.
- mDefaultTCRCEntry - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The default tc entry.
- mDefaultTransferPriority - Variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The default transfer priority that needs to be applied to the transfer
jobs.
- mDeferredRun - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
A boolean indicating whether the planner invocation is part of a larger
deferred planning run.
- mDeletedJobs - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Holds all the jobs deleted by the reduction algorithm.
- mDeletedLeafJobs - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Holds the jobs from the original dags which are deleted by the reduction
algorithm.
- mDependencies - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
Map of Dependencies between Job,DAX,DAG objects.
- mDeprecatedProperties - Variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The set containing the deprecated properties specified by the user.
- mDeprecatedTable - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The table containing the mapping of the deprecated keys to the newer keys.
- mDepth - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.AbstractSiteCatalogResource
-
- mDepth - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
-
- mDepth - Variable in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
Count the depths of elements in the document
- mDepth - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The depth of the node from the root or any arbitary node.
- mDescription - Static variable in class edu.isi.pegasus.planner.selector.replica.Default
-
A short description of the replica selector.
- mDescription - Static variable in class edu.isi.pegasus.planner.selector.replica.Local
-
A short description of the replica selector.
- mDescription - Static variable in class edu.isi.pegasus.planner.selector.replica.Regex
-
A short description of the replica selector.
- mDescription - Static variable in class edu.isi.pegasus.planner.selector.replica.Restricted
-
A short description of the replica selector.
- mDescription - Static variable in class edu.isi.pegasus.planner.selector.site.Group
-
The description of the site selector.
- mDescription - Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The description of the site selector.
- mDestMap - Variable in class edu.isi.pegasus.planner.classes.FileTransfer
-
The map containing all the destination urls keyed by the pool id/name.
- mDirectory - Variable in class edu.isi.pegasus.planner.classes.DAGJob
-
The directory in which the DAG needs to execute.
- mDirectory - Variable in class edu.isi.pegasus.planner.classes.DAXJob
-
The directory in which the DAX needs to execute.
- mDirectory - Variable in class edu.isi.pegasus.planner.classes.Job
-
The directory in which the job should run.
- mDirectory - Variable in class edu.isi.pegasus.planner.client.PartitionDAX
-
The directory in which the partition daxes are generated.
- mDirectory - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The directory, where the stdin file of the fat jobs are created.
- mDirectory - Variable in class edu.isi.pegasus.planner.refiner.NodeCollapser
-
The directory, where the stdin file of the fat jobs are created.
- mDirectory - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
The directory where all the files reside.
- mDirectory - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus
-
The directory where the files are to be generated.
- mDirectory - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus
-
The directory where the files are to be generated.
- mDirectory - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd
-
The directory where all the files reside.
- mDisabledChmodSites - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The set of sites for which chmod job creation has to be disabled while
doing executable staging.
- mDisableInvokeFunctionality - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Boolean indicating whether to disable invoke functionality.
- mDisplayHelp - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
To Display help or not.
- mDone - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
A boolean indicating whether the files have been generated or not.
- mDone - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
A flag to specify whether the graph has been generated for the partition
or not.
- mDone - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
A flag to specify whether the graph has been generated for the partition
or not.
- mDone - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
A flag to specify whether the graph has been generated for the partition
or not.
- mDone - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
A flag to specify whether the graph has been generated for the partition
or not.
- mDone - Variable in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
- mDone - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
A flag to store whether the parsing is complete or not.
- mDoNotClean - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
HashSet of Files that should not be cleaned up
- mDoStat - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
A boolean indicating whether to stat files or not.
- mDownwardRank - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The downward rank for a node.
- mDriver - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Stores the driver string
- Mds_Computer_Isa - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Mds_Computer_Total_Free_NodeCount - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Mds_Computer_Total_NodeCount - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Mds_Gram_Job_Queue_MaxCount - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Mds_Gram_Job_Queue_MaxCpuTime - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Mds_Gram_Job_Queue_MaxJobsInQueue - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Mds_Gram_Job_Queue_MaxRunningJobs - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Mds_Memory_Ram_FreeSizeMB - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Mds_Memory_Ram_Total_SizeMB - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Mds_Os_Name - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Mds_Service_Gram_SchedulerType - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Mds_Subnetid - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- mdsbaseDN - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- mdshost - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- mdsport - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- MdsQuery - Class in edu.isi.pegasus.planner.catalog.site.impl.old
-
This Class queries the GT2 based Monitoring and Discovery Service (MDS)
and stores the remote sites information into a single data class.
- MdsQuery() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
C'tor for the class.
- MdsQuery(String, int) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
Valid C'tor for the class to create a MdsQuery object.
- mDynamicDeployment - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
A boolean indicating whether kickstart is deployed dynamically or not.
- Measurement - Interface in edu.isi.pegasus.planner.visualize
-
An empty interface that is the super interface for all measuremnts we take
from the kickstart records.
- MeasurementComparator - Class in edu.isi.pegasus.planner.visualize
-
Comparator for Measurement objects that allows us to sort on time.
- MeasurementComparator() - Constructor for class edu.isi.pegasus.planner.visualize.MeasurementComparator
-
- measurementsIterator() - Method in class edu.isi.pegasus.planner.visualize.JobMeasurements
-
Returns the readings iterator.
- mElement - Variable in class edu.isi.pegasus.planner.parser.ParserStackElement
-
- mEmptyElement - Variable in class edu.isi.pegasus.common.util.XMLWriter
-
- mEnablingPartOfAggregatedJob - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
An instance variable to track if enabling is happening as part of a clustered constituentJob.
- mEnablingPartOfAggregatedJob - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
An instance variable to track if enabling is happening as part of a clustered job.
- mEnablingPartOfAggregatedJob - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
An instance variable to track if enabling is happening as part of a clustered job.
- mEndSeparator - Static variable in class edu.isi.pegasus.planner.code.generator.Stork
-
The nice end separator, define once, use often.
- mEndTime - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The end time for the planning.
- mEndTime - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The estimated end time for a job.
- mEndTime - Variable in class edu.isi.pegasus.planner.selector.site.heft.Processor
-
The end time of the current scheduled job.
- mEnvVar - Variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The map that contains the environment variables including the
default ones that are set while calling out to the site selector
unless they are overridden by the values set in the properties
file.
- merge(ReplicaCatalogEntry, ReplicaCatalogEntry, boolean) - Static method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Merges the attribute maps of two entries in a controlled fashion.
- merge(ReplicaCatalogEntry, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Merges the attribute maps in a controlled fashion.
- merge(ReplicaLocation) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Merges the ReplicaLocation
object to the existing one,
only if the logical filenames match.
- merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Merge the profiles in the namespace in a controlled manner.
- merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Merge the profiles in the namespace in a controlled manner.
- merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.ENV
-
Merge the profiles in the namespace in a controlled manner.
- merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Globus
-
Merge the profiles in the namespace in a controlled manner.
- merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Hints
-
Merge the profiles in the namespace in a controlled manner.
- merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Merge the profiles in the namespace in a controlled manner.
- merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Merge the profiles in the namespace in a controlled manner.
- merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Selector
-
Merge the profiles in the namespace in a controlled manner.
- merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Stat
-
Merge the profiles in the namespace in a controlled manner.
- mergeProfiles(Job) - Method in class edu.isi.pegasus.planner.classes.Job
-
Merges profiles from another job to this job in a controlled fashion.
- mErrStream - Variable in class edu.isi.pegasus.common.logging.logger.Default
-
The stream to which all the error messages are logged.By default it is
System.err
- mEscape - Static variable in class edu.isi.pegasus.planner.classes.Profile
-
A private static handle to the escape class.
- MESSAGE_DONE_PREFIX - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
Suffx for an event completion message.
- MetaData - Class in edu.isi.pegasus.planner.dax
-
Metadata object for the DAX API
- MetaData(MetaData) - Constructor for class edu.isi.pegasus.planner.dax.MetaData
-
Copy constructor
- MetaData(String, String) - Constructor for class edu.isi.pegasus.planner.dax.MetaData
-
Create a new Metadata object
- MetaData(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.MetaData
-
Create a new Metadata object
- method - Variable in class edu.isi.pegasus.planner.provisioner.Estimator
-
- Metrics - Class in edu.isi.pegasus.planner.code.generator
-
A Metrics file generator that generates a metrics file in the submit directory
The following metrics are logged in the metrics file
- Metrics() - Constructor for class edu.isi.pegasus.planner.code.generator.Metrics
-
- METRICS_FILE_SUFFIX - Static variable in class edu.isi.pegasus.planner.code.generator.Metrics
-
The suffix to use while constructing the name of the metrics file
- mEventBuffer - Variable in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
The buffer that stores information about the event
- mExecPools - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Set of the execution pools which the user has specified.
- mExecPools - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The pools on which the Dag should be executed as specified by the user.
- mExecPools - Variable in class edu.isi.pegasus.planner.selector.site.RoundRobin
-
The list of pools that have been given by the user at run time or has been
authenticated against.
- mExecutable - Variable in class edu.isi.pegasus.planner.dax.File
-
Is the file an executable.
- mExecutables - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
The list of Executable objects
- mExecutionToHintsNamespace - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The map that maps keys in execution tag to hints namespace.
- mExitParserArguments - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
The argument string containing the arguments with which the exitcode
is invoked on kickstart output.
- mExitParserPath - Variable in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript
-
The path to the exitcode client that parses the exit status of
the kickstart.
- mExtraArguments - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Any extra arguments that need to be passed ahead to the s3 client invocation.
- mFactory - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The handle to the file factory, that is used to create the top level
directories for each of the partitions.
- mFactory - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The handle to the file factory, that is used to create the top level
directories for each of the partitions.
- mFailOnFirstError - Variable in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Flag indicating whether to fail on first hard error or not.
- mFilename - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
The Site Catalog file to be parser.
- mFilename - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML3
-
The Site Catalog file to be parser.
- mFilename - Variable in class edu.isi.pegasus.planner.client.NetloggerExitcode
-
The kickstart file being parsed.
- mFileName - Variable in class edu.isi.pegasus.planner.partitioner.PDAXWriter
-
The fully qaulified path to the file being written.
- mFiles - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
The list of edu.isi.pegasus.planner.dax.File objects
- mFileServers - Variable in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType
-
The list of file servers that can be used to write to access this directory.
- mFilesInRC - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
the files whose locations are
returned from the ReplicaCatalog
- mFileTable - Variable in class edu.isi.pegasus.planner.transfer.refiner.Default
-
A Map containing information about which logical file has been
transferred to which site and the name of the stagein transfer node
that is transferring the file from the location returned from
the replica catalog.
- mFileTXList - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
The collection of FileTransfer
objects containing the
transfers the job is responsible for.
- mFlags - Variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The transient flags field which is kept as a bit field.
- mFlowTimestamp - Variable in class edu.isi.pegasus.planner.classes.DagInfo
-
The ISO timestamp corresponding to the time when Pegasus is invoked for a
dax.
- mFlushOnClose - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Boolean indicating whether to flush the contents back to the file on
close.
- mFlushOnClose - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Boolean indicating whether to flush the contents back to the file on
close.
- mForce - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The force option to make a build dag from scratch.
- mForceReplan - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the force replan option
- mFormatter - Static variable in class edu.isi.pegasus.common.logging.logger.Default
-
This is used to format the time stamp.
- mForwardOptions - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The options that need to be passed forward to pegasus-run.
- mFreeMem - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The free memory that the jobmanager reports.
- mFreeSize - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
The free space on the file system.
- mFreeSize - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The free space at the grid ftp server.
- mFreeSize - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
The free space available at the file system under this directory.
- mFTMap - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The FileTransfer map indexed by site id.
- mGenerateLOF - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
A boolean indicating whether to generate lof files or not.
- mGenerateLOF - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
A boolean indicating whether to generate lof files or not.
- mGenerateLOF - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
A boolean indicating whether to generate lof files or not.
- mGenRandomDir - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Whether to create a random directory in the execution directory that is
determined from the exec mount point in the pool configuration file.
- mGlibc - Variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
The Glibc version.
- mGlibc - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Optional information about the glibc.
- mGlibc - Variable in class edu.isi.pegasus.planner.dax.Executable
-
Glibc the executable is compiled for
- mGlobalIgnoredSites - Variable in class edu.isi.pegasus.planner.selector.replica.Restricted
-
The Set of ignored sites, that are ignored for selecting replicas for all
sites.
- mGlobalLog - Variable in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Flag indicating whether a global log file or per job file.
- mGlobalPreferredSites - Variable in class edu.isi.pegasus.planner.selector.replica.Restricted
-
The set of preferred sites, that are preferred stagein sites for all sites.
- mGlobusVersion - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The version of Globus Toolkit that was used to install the grid ftp server.
- mGlobusVersion - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The globus version that is installed on the remote site.
- mGraph - Variable in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
-
The partition that has to be sorted.
- mGraph - Variable in class edu.isi.pegasus.planner.partitioner.Partitioner
-
The map containing all the graph nodes.
- mGraph - Variable in class edu.isi.pegasus.planner.refiner.NodeCollapser
-
The internal map that contains the adjacency list representation of the
Graph referred to by the workflow.
- mGrid - Variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
-
The grid for which to query MYOSG
- mGrid - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The grid to which the user belongs to.
- mGRID - Variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS
-
The Grid for which information is required.
- mGrid - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites
-
- mGridFTPList - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The list of GridFTPServer
objects that contain the information
about the gridftp servers on the remote site.
- mGridGateways - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Map of grid gateways at the site for submitting different job types.
- mGridLaunch - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The path to the kickstart on the remote site.
- mGridStartFactory - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The handle to the GridStart Factory.
- mGridStartFactory - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The handle to the GridStart Factory.
- mGridStartFactory - Variable in class edu.isi.pegasus.planner.code.generator.Shell
-
The handle to the GridStart Factory.
- mGridStartImplementationTable - Variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
A table that maps short names of GridStart
implementations
with the implementations themselves.
- mGroupMap - Variable in class edu.isi.pegasus.planner.selector.site.Group
-
The map containing the the jobs grouped by the key group.
- mHandle - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The handle to the site, usually name of the site.
- mHasBeenRenderedToExecutableForm - Variable in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Boolean indicating whether a job has been fully rendered to an executable
job or not i.e the aggregated job has been mapped to the aggregator and
the constituent jobs have been gridstarted or not.
- mHeader - Variable in class edu.isi.pegasus.common.util.XMLWriter
-
- mHeadFS - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
The handle to the head node filesystem.
- mHeft - Variable in class edu.isi.pegasus.planner.ranking.Rank
-
The handle to the ranking algorithm.
- mHeftImpl - Variable in class edu.isi.pegasus.planner.selector.site.Heft
-
An instance of the class that implements the HEFT algorithm.
- micro0 - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
- micro1 - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
- micro2 - Variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
- mID - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
The site identifier.
- mId - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
-
- mID - Variable in class edu.isi.pegasus.planner.partitioner.Partition
-
The partition id of the partition.
- mIDCounter - Variable in class edu.isi.pegasus.planner.partitioner.Horizontal
-
The global counter that is used to assign ID's to the partitions.
- mIdleNodes - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
The number of idle nodes.
- mIdleNodes - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The total number of idle nodes that the jobmanager reports are on the
remote site.
- mIgnoredSitesMap - Variable in class edu.isi.pegasus.planner.selector.replica.Restricted
-
A Map indexed by site handles, that contains a set of site handles.
- mImpl - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The handle to the CleanupImplementation instance that creates the jobs for us.
- mImpl - Variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
The implementation instance that is used to create a create dir job.
- mImplementingClassNameTable - Static variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
A table that maps, Pegasus style keys to the names of the corresponding classes
implementing the CondorStyle interface.
- mImplementingClassNameTable - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
A table that maps, Pegasus style keys to the names of the corresponding classes
implementing the CondorStyle interface.
- mImplementingClassNameTable - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
A table that maps, Pegasus style keys to the names of the corresponding classes
implementing the CondorStyle interface.
- mImplementingClassTable - Variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
A table that maps, Pegasus style keys to appropriate classes implementing the
CredentialHandler interface
- mImplementingClassTable - Variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
A table that maps, Pegasus style keys to appropriate classes implementing the
JobAggregator interface
- mImplementingClassTable - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
A table that maps, Pegasus style keys to appropriate classes implementing the
CondorStyle interface
- MIN - Class in edu.isi.pegasus.planner.namespace.aggregator
-
An implementation of the Aggregator interface that takes the minimum of the
profile values.
- MIN() - Constructor for class edu.isi.pegasus.planner.namespace.aggregator.MIN
-
- min_bandwidth - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- Min_Bandwidth - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- MIN_BW - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- mInDegree - Variable in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
-
An array that contains the number of incoming edges to a node.
- mInDegree - Variable in class edu.isi.pegasus.planner.partitioner.Topological
-
An array that contains the number of incoming edges to a node.
- mIndex - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
The Index of the dax object.
- mIndex - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook
-
The index of the partition that is being written out.
- mIndex - Variable in class edu.isi.pegasus.planner.partitioner.Partition
-
The index associated with the partition.
- mIndex - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
index to do conversions between units.
- mIndexMap - Variable in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
-
A Map that returns the index into mInDegree map for a particular node
in graph.
- mIndexMap - Variable in class edu.isi.pegasus.planner.partitioner.Topological
-
A Map that returns the index into mInDegree map for a particular node
in graph.
- mInheritedRCFiles - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Set of replica catalog files that are inherited by a planning instance.
- mInheritedReplicaStore - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The inherited Replica Store
- mInitialized - Variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
A boolean indicating that the factory has been initialized.
- mInitialized - Variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
A boolean indicating that the factory has been initialized.
- mInitialized - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
A boolean indicating that the factory has been initialized.
- mInitialized - Variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
A boolean indicating that the factory has been initialized.
- mInitializeGridStart - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
A boolean indicating whether grid start has been initialized or not.
- mInitializeGridStart - Variable in class edu.isi.pegasus.planner.code.generator.Shell
-
A boolean indicating whether grid start has been initialized or not.
- MINOR - Static variable in class edu.isi.pegasus.common.util.Version
-
This constant defines the minor version number.
- MINOR - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
The constant for the minor version type.
- minor - Variable in class VersionTask
-
member variable to obatain the minor version number.
- mInputDir - Variable in class edu.isi.pegasus.planner.client.PlotNodeUsage
-
The input directory containing the kickstart records.
- mInputDir - Variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage
-
The input directory containing the kickstart records.
- mInputFile - Variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
The input directory containing the kickstart records.
- mInputFiles - Variable in class edu.isi.pegasus.planner.client.SCClient
-
The input files.
- mInputFiles - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The input files.
- mInputFormat - Variable in class edu.isi.pegasus.planner.client.SCClient
-
The input format for the site catalog.
- mInputFormat - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The input format for the transformation catalog.
- mInputReader - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner
-
Stores the stream from which we are currently scanning.
- mInstalled - Variable in class edu.isi.pegasus.planner.dax.Executable
-
Flag to mark if the executable is installed or can be staged.
- mInstance - Static variable in class edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactory
-
The singleton instance of the PPS implementation that is returned.
- mInternalMount - Variable in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType
-
The internal mount point for the directory.
- MINUTES_TIMING_UNITS - Static variable in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus
-
The minutes unit for the x axis.
- MINUTES_TIMING_UNITS - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus
-
The minutes unit for the x axis.
- mInvocationList - Variable in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
List of Invocation maps.
- mInvocationMap - Variable in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
The Map of key value pairs that are to be logged via Netlogger.
- mInvocationParser - Variable in class edu.isi.pegasus.planner.visualize.KickstartParser
-
Semi-singleton, dynamically instantiated once for the lifetime.
- mInvokeAlways - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
A boolean indicating whether to use invoke always or not.
- mInvokeLength - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The invoke limit trigger.
- mInvokeMap - Variable in class edu.isi.pegasus.planner.classes.Notifications
-
An enum map that associates the various notification events with the list
of actions that need to be taken.
- mInvokes - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
-
- mInvokes - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
List of Notification objects
- mInvokes - Variable in class edu.isi.pegasus.planner.dax.Executable
-
List of Notification objects
- mInvokes - Variable in class edu.isi.pegasus.planner.dax.Transformation
-
- mIPEng - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The handle to the InterPool Engine that calls out to the Site Selector
and maps the jobs.
- mIPStream - Variable in class edu.isi.pegasus.common.util.StreamGobbler
-
The input stream that is to be read from.
- missingKeyError(Job, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.GLite
-
Constructs an error message in case of style mismatch.
- mJMStore - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
A Map store that stores JobMeasurements objects indexed by the name of the jobs.
- mJob - Variable in class edu.isi.pegasus.planner.classes.FileTransfer
-
The logical name of the asssociated VDS super node, with which the file
is associated.
- mJobAggregator - Variable in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Handle to the JobAggregator that created this job.
- mJobAggregatorFactory - Variable in class edu.isi.pegasus.planner.cluster.Abstract
-
The handle to the job aggregator factory.
- mJobAggregatorFactory - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
The handle to the job aggregator factory.
- mJobComparator - Static variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
A singleton access to the job comparator.
- mJobExecutablesStaged - Variable in class edu.isi.pegasus.planner.classes.Job
-
Boolean indicating whether the job executables were staged for it or not.
- mJobID - Variable in class edu.isi.pegasus.planner.client.NetloggerExitcode
-
The id of the job.
- mJobInSize - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
Stores in bytes the size of all the input files for a job.
- mJobManagerList - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The list of JobManager
objects that contain the information
about the jobmanagers associated with the remote site.
- mJobManagerType - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The type of remote scheduler to which the jobmanager talks to.
- mJobMap - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
Map to hold the jobs sorted by the label of jobs in dax.
- mJobMap - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
The mapping of the idrefs of a job to the job name.
- mJobMap - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The internal map that maps the partition id to the job responsible
for executing the partition..
- mJobMap - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook
-
The map containing all the jobs in the dax indexed by the job id.
- mJobMeasurements - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
Stores all the space readings for the current invocation record.
- mJobName - Variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the job (jobname) to which the profiles for this namespace
belong.
- mJobOutSize - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
Stores in bytes the size of all the output files for a job.
- mJobPrefix - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The prefix that is to be applied while constructing job names.
- mJobPrefix - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The job prefix that needs to be applied to the job file basenames.
- mJobPrefix - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
A job prefix specifed at command line.
- mJobPrefix - Variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
The job prefix that needs to be applied to the job file basenames.
- mJobPrefix - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The job prefix that needs to be applied to the job file basenames.
- mJobPrefix - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The job prefix that needs to be applied to the job file basenames.
- mJobs - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
The List of Job,DAX and DAG objects
- mJobsInQueue - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The number of jobs in the remote queue at the remote site.
- mJobSpace - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
Stores all the space readings for the current invocation record.
- mJobSpaceStore - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd
-
A Map store that stores JobSpace objects indexed by the name of the jobs.
- mJobType - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
The type of jobs that this grid gateway can accept.
- mKeepTMP - Variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The tristate value for whether keeping the temporary files generated or
not.
- mKeepTmpFile - Variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
-
A boolean variable that tracks whether to keep the temp xml file or not.
- mKey - Variable in class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
The connection key.
- mKey - Variable in class edu.isi.pegasus.planner.classes.Profile
-
- mKey - Variable in class edu.isi.pegasus.planner.dax.MetaData
-
Metadata Key
- mKey - Variable in class edu.isi.pegasus.planner.dax.Profile
-
Key of the profile
- mKickstartGridStartImpl - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Handle to kickstart GridStart implementation.
- mKickstartLabel - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The label that is passed to kickstart.
- mLabel - Variable in class edu.isi.pegasus.planner.dax.Parent
-
The edge label for the parent child relationship.
- mLabel - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
The label of the abstract dax as set by Chimera.
- mLabel - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
The label of the abstract dax.
- mLabel - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The label of the workflow.
- mLabelKey - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph
-
The profile key that is used for the labelling.
- mLastAddedNode - Variable in class edu.isi.pegasus.planner.partitioner.Partition
-
A pointer to the last added node to the partition.
- mLevel - Variable in class edu.isi.pegasus.common.util.DefaultStreamGobblerCallback
-
The level on which the messages are to be logged.
- mLevelList - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator
-
A temporary list that stores all the nodes on a particular level.
- mLFN - Variable in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
The LFN associated with the entry.
- mLineSeparator - Variable in class edu.isi.pegasus.common.util.XMLWriter
-
- mLink - Variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
Linkage of the file.
- mLink - Variable in class edu.isi.pegasus.planner.dax.File
-
- mList - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM.ListCallback
-
The ArrayList where the lines are stored.
- mLoadAll - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
-
A boolean indicating whether to load all sites.
- mLoadAll - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogParser
-
A boolean indicating whether to load all sites.
- mLocalDirectory - Variable in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
The local directory on the node.
- mLocalEnv - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The namespace object holding the environment variables for local
pool.
- mLocalIrodsEnv - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The path to the irodsEnv file on the submit host (local pool).
- mLocalIrodsEnvBasename - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The basename of the user irodsEnv file
- mLocalPathToPegasusLiteCommon - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The local path on the submit host to pegasus-lite-common.sh
- mLocalS3cfg - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The path to the s3cfg file on the submit host (local pool).
- mLocalS3cfgBasename - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The basename of the user s3cfg file
- mLocalTransfer - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
boolean indicating whether the transfer job needs to run on local site
- mLocalTransfers - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Map that indicates whether we need local setup transfer jobs for a site or
not.
- mLocalURLPrefix - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The local url prefix for the submit host.
- mLocalUserProxy - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The path to the user proxy on the submit host (local pool), that is picked
up for use in transfer of proxies.
- mLocalUserProxyBasename - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The basename of the user proxy , that is picked up for use in transfer of
proxies.
- mLocator - Variable in class edu.isi.pegasus.planner.parser.Parser
-
Locator object to determine on which line in the xml has the error
occured.
- mLog4jConf - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
The log4j system property
- mLogBuffer - Variable in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
The buffer that stores information about the log message
- mLogEvent - Variable in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
The current event object.
- mLogFormatter - Variable in class edu.isi.pegasus.common.logging.LogManager
-
The LogFormatter to use to format the message.
- mLogFormatter - Variable in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper
-
The handle to the netlogger log formatter.
- mLogFormatter - Variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The handle to the netlogger log formatter.
- mLogger - Variable in class edu.isi.pegasus.common.credential.impl.Abstract
-
A handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.common.logging.logger.Log4j
-
The handle to a log4j logger object.
- mLogger - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
Ensures only one object is created always.
- mLogger - Variable in class edu.isi.pegasus.common.util.CondorVersion
-
The default logger.
- mLogger - Variable in class edu.isi.pegasus.common.util.DefaultStreamGobblerCallback
-
The instance to the logger to log messages.
- mLogger - Variable in class edu.isi.pegasus.common.util.StreamGobbler
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.common.util.XMLWriter
-
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
The handle to the logging manager.
- mLogger - Static variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil
-
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
-
The Logging instance.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
-
The handle to the log manager.
- mLogger - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogUtil
-
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
The LogManager object which is used to log all the messages.
- mLogger - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The handle to the log manager.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS
-
The handle to the log manager.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
The Logging instance.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML3
-
The handle to the log manager.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
-
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
The default logger.
- mLogger - Static variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
The LogManager object which is
used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
Handle to the logger.
- mLogger - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TCMode
-
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.work.Database
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.classes.Data
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The handle to the LogManager.
- mLogger - Variable in class edu.isi.pegasus.planner.classes.TCMap
-
- mLogger - Variable in class edu.isi.pegasus.planner.client.Executable
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.cluster.Abstract
-
The handle to the logger object.
- mLogger - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The handle to the LogManager that logs all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
The handle to the logger object.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.Abstract
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
A handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Handle to the logging manager.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.Metrics
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper
-
The handle to pegasus logger used for run.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.Stork
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
The logger to use.
- mLogger - Variable in class edu.isi.pegasus.planner.common.UserOptions
-
The Logger object used to
log the messages.
- mLogger - Static variable in class edu.isi.pegasus.planner.dax.AbstractJob
-
- mLogger - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
- mLogger - Variable in class edu.isi.pegasus.planner.dax.CatalogType
-
- mLogger - Variable in class edu.isi.pegasus.planner.namespace.Namespace
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
The logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.parser.Parser
-
The LogManager object which logs the Pegasus messages.
- mLogger - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
The transformation to the logger used to log messages.
- mLogger - Variable in class edu.isi.pegasus.planner.parser.XMLErrorHandler
-
The handle to the logging object that is used to log the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
The handle to the logging manager.
- mLogger - Variable in class edu.isi.pegasus.planner.partitioner.Label
-
The handle to the Logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan
-
Handle to the logging manager.
- mLogger - Variable in class edu.isi.pegasus.planner.partitioner.Partitioner
-
The handle to the internal logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.partitioner.PDAXWriter
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
The handle to the logger object.
- mLogger - Variable in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
The handle to the logger.
- mLogger - Variable in class edu.isi.pegasus.planner.ranking.GetDAX
-
The instance to the Logging manager.
- mLogger - Variable in class edu.isi.pegasus.planner.ranking.Rank
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The handle to the logger.
- mLogger - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The handle to the logging object used for logging.
- mLogger - Variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
The handle to the logging object, that is used to log the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
The logging object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.refiner.NodeCollapser
-
The handle to the logger object.
- mLogger - Variable in class edu.isi.pegasus.planner.selector.replica.Default
-
The handle to the logging object that is used to log the various debug
messages.
- mLogger - Variable in class edu.isi.pegasus.planner.selector.replica.Local
-
The handle to the logging object that is used to log the various debug
messages.
- mLogger - Variable in class edu.isi.pegasus.planner.selector.site.Abstract
-
The handle to the logger.
- mLogger - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The handle to the LogManager
- mLogger - Variable in class edu.isi.pegasus.planner.selector.TransformationSelector
-
- mLogger - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The logging object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The logging object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.transfer.sls.Condor
-
The handle to the logging manager.
- mLogger - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The handle to the logging manager.
- mLogger - Variable in class edu.isi.pegasus.planner.transfer.TPT
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.visualize.KickstartParser
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
The handle to the logger.
- mLogger - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
The handle to the logger.
- mLogger - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd
-
The handle to the logging object
- mLoggingLevel - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Denotes the logging level that is to be used for logging the messages.
- mLoggingLevel - Variable in class edu.isi.pegasus.planner.client.NetloggerExitcode
-
The logging level to be used.
- mLoggingLevel - Variable in class edu.isi.pegasus.planner.client.PlotNodeUsage
-
The logging level to be used.
- mLoggingLevel - Variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage
-
The logging level to be used.
- mLoggingLevel - Variable in class edu.isi.pegasus.planner.client.SCClient
-
Denotes the logging level that is to be used for logging the messages.
- mLoggingLevel - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
Denotes the logging level that is to be used for logging the messages.
- mLogicalFile - Variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The logical name of the file.
- mLogicalID - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The logical id of the job as identified in the dax.
- mLogicalName - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The logical name of the node as identified in the dax.
- mLogMsg - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
The String holding the log message.
- mLogMsg - Variable in class edu.isi.pegasus.planner.classes.Data
-
The String which stores the message to be stored.
- mLogMsg - Variable in class edu.isi.pegasus.planner.client.Executable
-
The error message to be logged.
- mLogMsg - Variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The String containing the messages to be logged.
- mLogMsg - Variable in class edu.isi.pegasus.planner.parser.Parser
-
The String which contains the messages to be logged.
- mLogMsg - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
Contains the message which is to be logged by Pegasus.
- mLogMsg - Variable in class edu.isi.pegasus.planner.transfer.refiner.Default
-
The string holding the logging messages
- mLogProgress - Variable in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Flag to indicate whether to log progress or not.
- mLookAhead - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Stores the look-ahead symbol.
- mLookAhead - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner
-
Captures the look-ahead character.
- mLRCList - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The list of LRC
objects that contain the information about
the various LRCs associated with the remote site.
- mLRCURL - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC
-
The contact string to the lrc e.g rls://sukhna.isi.edu .
- mMainJob - Variable in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
The main job whose record is being parsed.
- mMainJob - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
The main job whose record is being parsed.
- mMainJob - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
The main job whose record is being parsed.
- mMajorVersion - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
This variable defines the major version number.
- mMajorVersionLevel - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Stores the major version of the planner.
- mMask - Variable in class edu.isi.pegasus.common.logging.logger.Default
-
The mask that needs to be deployed to determine what messages are to be
logged.
- mMaxCount - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The maximum number of jobs that can be running on the remote site.
- mMaxCPUTime - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The max walltime of the jobs that are run on the remote site.
- mMaxDepth - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The max depth of any job in the workflow useful for a priorityQueue
implementation in an array
- mMDAGPropertiesFile - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The path to the properties file that is written out and shared by
all partitions in the mega DAG.
- mMeasurementList - Variable in class edu.isi.pegasus.planner.visualize.JobMeasurements
-
The list of Measurement objects.
- mMegadag - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The megadag generation mode.
- mMegaDAG - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The abstract dag object that ends up holding the megadag.
- mMessage - Variable in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
The current log event message.
- mMetadata - Variable in class edu.isi.pegasus.planner.dax.CatalogType
-
- mMetadata - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
The metadata of the workflow.
- mMinorVersion - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
This variable defines the minor version number.
- mMinorVersionLevel - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Stores the major version of the planner.
- mMonitor - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Boolean indicating whether to spawn off a monitoring process or not
for the workflow.
- mMountPoint - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
The mount point for the server.
- mMountPoint - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
The mount point for the file system.
- mMYOSGInfo - Variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
-
- mName - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The logical mName of the transformation.
- mName - Variable in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
The name of the tranformation.
- mName - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
-
- mName - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
The Name / Label of the DAX
- mName - Variable in class edu.isi.pegasus.planner.dax.Executable
-
Name of the executable
- mName - Variable in class edu.isi.pegasus.planner.dax.File
-
The logical name of the file.
- mName - Variable in class edu.isi.pegasus.planner.dax.Parent
-
The name of the parent
- mName - Variable in class edu.isi.pegasus.planner.dax.Transformation
-
Name of the transformation
- mName - Variable in class edu.isi.pegasus.planner.partitioner.Partition
-
The name of the partition.
- mName - Variable in class edu.isi.pegasus.planner.partitioner.PDAXWriter
-
The name assigned to the pdax file being written.
- mName - Variable in class edu.isi.pegasus.planner.ranking.Ranking
-
The name of the DAX.
- mName - Variable in class edu.isi.pegasus.planner.selector.site.heft.Site
-
The logical name assigned to the site.
- mName - Variable in class edu.isi.pegasus.planner.visualize.JobMeasurements
-
The name of the job.
- mName - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace
-
The name of the job.
- mNamepsaceToPropertiesPrefix - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- mNamespace - Variable in class edu.isi.pegasus.common.util.XMLWriter
-
- mNamespace - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The logical mNamespace of the transformation
- mNamespace - Variable in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
The namespace of the compound transformation.
- mNamespace - Variable in class edu.isi.pegasus.planner.classes.Profile
-
- mNamespace - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
-
- mNamespace - Variable in class edu.isi.pegasus.planner.dax.Executable
-
Namespace of the executable
- mNamespace - Variable in class edu.isi.pegasus.planner.dax.File
-
The namespace on a file.
- mNamespace - Variable in class edu.isi.pegasus.planner.dax.Profile
-
Namespace of the profile
- mNamespace - Variable in class edu.isi.pegasus.planner.dax.Transformation
-
Namespace of the Transformation
- mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the implementing namespace.
- mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the implementing namespace.
- mNamespace - Variable in class edu.isi.pegasus.planner.namespace.ENV
-
The name of the implementing namespace.
- mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Globus
-
The name of the implementing namespace.
- mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Hints
-
The name of the implementing namespace.
- mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the implementing namespace.
- mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Selector
-
The name of the implementing namespace.
- mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Stat
-
The name of the implementing namespace.
- mNamespace - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
For holding the namespace if specified in the Profile Element.
- mNext - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
The index of the job to which the next transfer for the pool would
be scheduled.
- mNext - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer
-
The index of the bundle to which the next transfer for the site would
be added to.
- mNMIArchToVDSArchMap - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
-
The map storing architecture to corresponding NMI architecture platforms.
- mNMIOSToVDSOSMap - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
-
The map storing OS to corresponding NMI OS platforms.
- mNodeCollapser - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The handle to the node collapser.
- mNodeComparator - Variable in class edu.isi.pegasus.planner.partitioner.Horizontal
-
A static instance of GraphNode comparator.
- mNodeIdPattern - Static variable in class edu.isi.pegasus.planner.dax.Patterns
-
- mNodeLabel - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
-
- mNodeList - Variable in class edu.isi.pegasus.planner.partitioner.Partition
-
The list of GraphNode objects corresponding to the nodes
making the partiition.
- mNodeSet - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook
-
The set of job id's in the partition.
- mNodeSet - Variable in class edu.isi.pegasus.planner.partitioner.Partition
-
The set of node id's in the partition.
- mNodeSet - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook
-
The set of job id's in the partition.
- mNoGridStartImpl - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Handle to NoGridStart implementation.
- mNonStandardJavaOptions - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The set of non standard java options that need to be passed to the JVM
- mNonTPTSite - Variable in class edu.isi.pegasus.planner.classes.TransferJob
-
The site at which the transfer jobs would have run, had it been running
in a peer 2 peer transfer mode (non third party mode).
- mNotifications - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
All the notifications associated with the job
- mNotifications - Variable in class edu.isi.pegasus.planner.classes.ADag
-
All the notifications associated with the job
- mNotifications - Variable in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
All the notifications associated with the job
- mNotifications - Variable in class edu.isi.pegasus.planner.classes.Job
-
All the notifications associated with the job
- mNotifications - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
All the notifications associated with the adag
- mNotificationsWriter - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The handle to the PrintWriter that writes out the notifications file
- mNum - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement
-
The number of jobs.
- mNumChmodJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
- mNumCleanupJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of cleanup jobs.
- mNumClusteredJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of clustered compute jobs.
- mNumComputeJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of compute jobs.
- mNumComputeTasks - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of compute tasks in the DAX
- mNumCreateDirJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of create dir jobs.
- mNumDAGJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of DAG jobs in the workflow
- mNumDAGTasks - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of DAG tasks in the DAX.
- mNumDAXJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of dax jobs in the workflow
- mNumDAXTasks - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of DAX tasks in the DAX
- mNumFormatter - Variable in class edu.isi.pegasus.planner.client.CPlanner
-
The number formatter to format the run submit dir entries.
- mNumFormatter - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The number formatter to format the run submit dir entries.
- mNumFormatter - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The number formatter to format the run submit dir entries.
- mNumFormatter - Variable in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan
-
The number formatter to format the run submit dir entries.
- mNumFormatter - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus
-
The number formatter to format the float entries.
- mNumFormatter - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus
-
The number formatter to format the float entries.
- mNumInterTxJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of inter-site transfer jobs.
- mNumJobsStore - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
The number of jobs executing at any given time per site.
- mNumOfJobs - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook
-
The number of jobs that are in the partition.
- mNumOfJobs - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook
-
The number of jobs that are in the partition.
- mNumOfRescueTries - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The numer of rescue's to try before replanning.
- mNumOfTXProcesses - Variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
The number of g-u-c processes that are spawned to transfer the files in
one transfer job.
- mNumOfTXStreams - Variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
The number of streams that each g-u-c process opens to do the ftp transfer.
- mNumOfTXStreams - Variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
The number of streams that each g-u-c process opens to do the ftp transfer.
- mNumProcessors - Variable in class edu.isi.pegasus.planner.selector.site.heft.Site
-
The number of processors making up a site.
- mNumRegJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of registration jobs.
- mNumSITxJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of stage in transfer jobs.
- mNumSOTxJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of stage-out transfer jobs.
- mNumTotalJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The total number of jobs in the executable workflow.
- mObject - Variable in class edu.isi.pegasus.planner.parser.ParserStackElement
-
- MODIFY_FOR_FILE_URLS_KEY - Static variable in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Property specify whether to modify file url or not.
- modifyFileURL - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Boolean indicating whether to modify the file URL or not
- modifyFileURL - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Boolean indicating whether to modify the file URL or not
- modifyForFileURLS(TransformationCatalogEntry) - Static method in class edu.isi.pegasus.planner.catalog.transformation.impl.Abstract
-
Modifies a Transformation Catalog Entry to handle file URL's.
- modifyForFileURLS(String, String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.impl.Abstract
-
Modifies a Transformation Catalog Entry to handle file URL's.
- modifyJobForFirstLevelStaging(Job, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Modifies a job for the first level staging to headnode.This is to add
any files that needs to be staged to the head node for a job specific
to the SLS implementation.
- modifyJobForFirstLevelStaging(Job, String, String, String) - Method in interface edu.isi.pegasus.planner.transfer.SLS
-
Modifies a job for the first level staging to headnode.This is to add
any files that needs to be staged to the head node for a job specific
to the SLS implementation.
- modifyJobForFirstLevelStaging(Job, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Modifies a job for the first level staging to headnode.This is to add
any files that needs to be staged to the head node for a job specific
to the SLS implementation.
- modifyJobForWorkerNodeExecution(Job, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Modifies a compute job for second level staging.
- modifyJobForWorkerNodeExecution(Job, String, String, String) - Method in interface edu.isi.pegasus.planner.transfer.SLS
-
Modifies a compute job for second level staging.
- modifyJobForWorkerNodeExecution(Job, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Modifies a compute job for second level staging.
- modifyURL - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Boolean indicating whether to modify the file URL or not
- MONITORD_COMMENT_MARKER - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The marker to designate a line in the input file reserved for
monitord purposes.
- MonitordNotify - Class in edu.isi.pegasus.planner.code.generator
-
A MonitordNotify Input File Generator that generates the input file required
for pegasus-monitord.
- MonitordNotify() - Constructor for class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
- monitorWorkflow() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns boolean indicating whether we want to monitor or not.
- mOPStream - Variable in class edu.isi.pegasus.common.util.StreamGobbler
-
The output stream to which the contents have to be redirected to.
- mOptArg - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Designates if the optional argument to the random directory was given.
- mOptional - Variable in class edu.isi.pegasus.planner.dax.File
-
Is the file optional
- mOrder - Variable in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
-
The number of nodes in the graph.
- mOrgDagRelations - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
the dag relations of the
orginal dag
- mOrgJobsInRC - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
the jobs which are found to be in
the Replica Catalog.
- mOriginalArgumentString - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The argument string with which the planner was invoked.
- mOriginalDag - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The Original Dag object which is constructed by parsing the dag file.
- mOriginalDag - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
the original dag object which
needs to be reduced on the basis of
the results returned from the
Replica Catalog
- mOS - Variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
The Operating System.
- mOS - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
An optional os type for the grid gateway.
- mOs - Variable in class edu.isi.pegasus.planner.dax.Executable
-
Os the executable is compiled for
- mOSRelease - Variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
The Operating System Release.
- mOSRelease - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Optional information about the os release.
- mOsRelease - Variable in class edu.isi.pegasus.planner.dax.Executable
-
Os release the executable is compiled for
- mOSToNMIOSReleaseAndVersion - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The map storing OS to corresponding NMI OS platforms.
- mOSType - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The operating system type type of the remote machines to which the
jobmanager talks to.
- mOSVersion - Variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
The Operating System Version.
- mOSVersion - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Optional information about the version.
- mOsVersion - Variable in class edu.isi.pegasus.planner.dax.Executable
-
OS version the executable is compiled for
- mOutputDir - Variable in class edu.isi.pegasus.planner.client.PlotNodeUsage
-
The output directory where to generate the ploticus output.
- mOutputDir - Variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage
-
The output directory where to generate the ploticus output.
- mOutputDir - Variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
The output directory where to generate the ploticus output.
- mOutputFile - Variable in class edu.isi.pegasus.planner.client.RankDAX
-
The output file that lists the daxes in sorted order.
- mOutputFile - Variable in class edu.isi.pegasus.planner.client.SCClient
-
The output file that is written out.
- mOutputFile - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The output file that is written out.
- mOutputFormat - Variable in class edu.isi.pegasus.planner.client.SCClient
-
The output format for the site catalog.
- mOutputFormat - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The output format for the transformation catalog.
- mOutputPool - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The output pool on which the data products are needed to be transferred to.
- mOutputPool - Static variable in class edu.isi.pegasus.planner.refiner.Engine
-
The pool on which all the output data should be transferred.
- mOutStream - Variable in class edu.isi.pegasus.common.logging.logger.Default
-
The stream to which one writes.
- moveLeft(LinkedList[], int, long) - Method in class edu.isi.pegasus.planner.provisioner.Node
-
Redistribute this task to the earlier time.
- moveRight(LinkedList[], int, long) - Method in class edu.isi.pegasus.planner.provisioner.Node
-
Redistribute this task to the later time.
- mParents - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The list of parents of a node referred to by mCurrentChildId.
- mParents - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
List of parents for a child node in the graph
- mParents - Variable in class edu.isi.pegasus.planner.parser.PDAXParser
-
List of parents for a particular child.
- mParents - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The list of parents of the job/node in the abstract graph.
- mParentsMap - Variable in class edu.isi.pegasus.planner.partitioner.Partition
-
A map containing a node and it's parents ids in the partition.
- mParseKickstart - Variable in class edu.isi.pegasus.planner.visualize.KickstartParser
-
The parser class that is used to parse a kickstart record and return
the invocation record.
- mParser - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML3
-
The handle to parser instance that will parse the site catalog.
- mParser - Variable in class edu.isi.pegasus.planner.parser.Parser
-
The object which is used to parse the dax.
- mParsingDone - Variable in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
A boolean indicating that parsing is done.
- mPartADAG - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook
-
The ADAG object containing the partitioned dax.
- mPartADAG - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook
-
The ADAG object containing the partitioned dax.
- mPartition - Variable in class edu.isi.pegasus.planner.parser.PDAXParser
-
The object holding the contents of one partition as indicated in the
pdax.
- mPartition - Variable in class edu.isi.pegasus.planner.partitioner.Topological
-
The partition that has to be sorted.
- mPartitionClusterMap - Variable in class edu.isi.pegasus.planner.cluster.Abstract
-
A Map that indexes the partition ID to the name of clustered job.
- mPartitionerTable - Static variable in class edu.isi.pegasus.planner.cluster.ClustererFactory
-
The table that maps clustering technique to a partitioner.
- mPartitionID - Variable in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
-
The value for the partition key.
- mPartitioningStarted - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
A boolean indicating that the partitioning has started.
- mPartitioningType - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Stores the type of partitioning to be done.
- mPartitionMap - Variable in class edu.isi.pegasus.planner.partitioner.Horizontal
-
A map indexed by the partition ID.
- mPartitionMap - Variable in class edu.isi.pegasus.planner.partitioner.Label
-
A map indexed by the label.
- mPartitionName - Variable in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
The name of the partition dax that are generated.
- mPassword - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Stores the MySQL password
- mPatchVersion - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
This variable defines the patch version number.
- mPatchVersionLevel - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Stores the major version of the planner.
- mPattern - Static variable in class edu.isi.pegasus.common.util.CondorVersion
-
Stores compiled patterns at first use, quasi-Singleton.
- mPattern - Variable in class edu.isi.pegasus.planner.client.SubmitDirectoryFilenameFilter
-
Stores compiled patterns at first use, quasi-Singleton.
- mPattern - Static variable in class edu.isi.pegasus.planner.common.RunDirectoryFilenameFilter
-
Stores compiled patterns at first use, quasi-Singleton.
- mPattern - Static variable in class edu.isi.pegasus.planner.parser.pdax.RunDirectoryFilenameFilter
-
Stores compiled patterns at first use, quasi-Singleton.
- mPattern - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Stores compiled patterns at first use, quasi-Singleton.
- mPattern - Variable in class edu.isi.pegasus.planner.selector.replica.Regex.Rank
-
The compiled regex expression
- mPattern - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.KickstartOutputFilenameFilter
-
Stores compiled patterns at first use, quasi-Singleton.
- mPDAX - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
The path to the PDAX file written out.
- mPDAXDirectory - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The directory in which the daxes corresponding to the partitions are
kept.
- mPDAXDirectory - Variable in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
The directory in which the daxes corresponding to the partition are
generated.
- mPDAXFile - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The path to the pdax file that contains the partition graph.
- mPDAXWriter - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
The handle to the partition graph writer.
- mPegasusHome - Variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The value of the PEGASUS_HOME environment variable.
- mPegasusLiteEnabled - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
A boolean indicating whether pegasus lite mode is picked up or not.
- mPegasusLiteLocalWrapper - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
Path to Pegasus Lite local wrapper script.
- mPegasusPlanOptions - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The object containing all the options passed to the Concrete Planner.
- mPegasusPlanOptions - Variable in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan
-
The object containing all the options passed to the Concrete Planner.
- mPegasusProfilesInProperties - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Pegasus Profiles specified in the properties.
- mPFN - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The physical path on the resource for a particular arch, os and type.
- mPFNList - Variable in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
A list of ReplicaCatalogEntry
objects containing the PFN's
and associated attributes.
- mPFNs - Variable in class edu.isi.pegasus.planner.dax.CatalogType
-
- MPI_EXEC_CLASS - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactory
-
The name of the class in this package, that corresponds to mpiexec.
- MPIExec - Class in edu.isi.pegasus.planner.cluster.aggregator
-
This class aggregates the smaller jobs in a manner such that
they are launched at remote end, by mpiexec on n nodes where n is the nodecount
associated with the aggregated job that is being lauched by mpiexec.
- MPIExec() - Constructor for class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
The default constructor.
- mPlannerMajorMinorVersion - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The major minor version that is used to construct the URL for the
pegasus website.
- mPlannerOptions - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
- mPlannerOptions - Variable in class edu.isi.pegasus.planner.client.RankDAX
-
The options to be passed ahead to pegasus plan.
- mPlannerOpts - Variable in class edu.isi.pegasus.planner.common.UserOptions
-
The object containing all the
user options.
- mPMetrics - Variable in class edu.isi.pegasus.planner.client.CPlanner
-
The PlannerMetrics object storing the metrics about this planning instance.
- mPool - Variable in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
The pool id at of the pool which the resource is .
- mPool - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
The remote pool for which these transfers are grouped.
- mPoolClass - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Specifies the implementing class for the pool interface.
- mPoolConfig - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
Handle to the PoolConfig object
- mPoolFile - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
The path to the file containing the pool information.
- mPoolHandle - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.Text
-
The internal singleton handle.
- mPoolHandle - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.XML
-
- mPoolProvider - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
The path to the pool information provider.
- mPOptions - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The options passed to the planner.
- mPOptions - Variable in class edu.isi.pegasus.planner.client.CPlanner
-
The object containing all the options passed to the Concrete Planner.
- mPOptions - Variable in class edu.isi.pegasus.planner.code.generator.Abstract
-
The object containing the command line options specified to the planner
at runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The object containing the command line options specified to the planner
at runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
The object containing the command line options specified to the planner
at runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.code.generator.Metrics
-
The object containing the command line options specified to the planner
at runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The object containing the command line options specified to the planner
at runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The object containing the command line options specified to the planner
at runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The options passed to the planner.
- mPOptions - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
The options passed to the planner.
- mPOptions - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The options passed to the planner.
- mPOptions - Static variable in class edu.isi.pegasus.planner.common.UserOptions
-
The object holding the
Singleton instance.
- mPOptions - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The object containing the options that were given to the concrete
planner at runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
Contains the various options to the Planner as passed by the user at
runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The options passed to the planner at runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Contains the various options to the Planner as passed by the user at
runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.transfer.sls.Condor
-
The handle to the planner options.
- mPosition - Variable in exception edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParserException
-
Remembers the position that cause the exception to be thrown.
- mPostScriptDebug - Variable in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript
-
A boolean indicating whether to turn the debug on for the postscript or
not.
- mPOSTScriptImplementationTable - Variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
A table that maps short names of POSTScript
implementations
with the implementations themselves.
- mPOSTScriptPath - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
The path to the user postscript on the submit host.
- mPOSTScriptPath - Variable in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
-
The path to the user postscript on the submit host.
- mPostScriptProperties - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
The path to the properties file created in submit directory.
- mPostScriptProperties - Variable in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript
-
The properties that need to be passed to the postscript invocation
on the command line in the java format.
- mPPS - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
The handle to the provenance store implementation.
- mPPS - Variable in class edu.isi.pegasus.planner.transfer.refiner.Default
-
The handle to the provenance store implementation.
- mPreferredSitesMap - Variable in class edu.isi.pegasus.planner.selector.replica.Restricted
-
A Map indexed by site handles, that contains a set of site handles.
- mPreviousToken - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner
-
Captures the previous token.
- mProcessors - Variable in class edu.isi.pegasus.planner.selector.site.heft.Site
-
A list of processors making up the site.
- mProfileKey - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
For holding the key attribute in profile tag.
- mProfileKey - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.BundleValue
-
The pegasus profile key to use for lookup
- mProfileList - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The list of Profile
objects that contain the profile
information associated with the remote site.
- mProfileMap - Variable in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
An enum map that associates the enum keys with the corresponding
namespace objects.
- mProfileMap - Variable in class edu.isi.pegasus.planner.namespace.Namespace
-
The Map object that contains the profiles for a particular namespace.
- mProfiles - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
The profiles associated with the FileSystem.
- mProfiles - Variable in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
The profiles associated with the headnode filesystem.
- mProfiles - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
The profiles asscociated with the site.
- mProfiles - Variable in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
The profiles associated with the headnode filesystem.
- mProfiles - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The profiles associated with the site.
- mProfiles - Variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
Profiles that are specified in the properties
- mProfiles - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
-
- mProfiles - Variable in class edu.isi.pegasus.planner.dax.CatalogType
-
- mProfiles - Variable in class edu.isi.pegasus.planner.dax.PFN
-
- mProfileTag - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Set as and when Profile and Argument tags are started and ended.
- mProgram - Variable in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
The name of the program.
- mProgram - Variable in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
The name of the program.
- mProgram - Variable in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
The name of the program.
- mPrompt - Variable in class edu.isi.pegasus.common.util.StreamGobbler
-
The prompt that is to be written to the output stream.
- mProperties - Variable in class edu.isi.pegasus.common.logging.logger.Log4j
-
The properties passed at runtime
- mProperties - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The properties container for properties specified on the commandline
in the DAX dax elements.
- mPropertiesFilename - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites
-
- mPropertiesPath - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The pointer to the properties file that was used.
- mPropertyTable - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
An internal table that maps remote transfer type to the corresponding
property.
- mPropertyTable - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
An internal table that maps third party transfer type to the corresponding
property.
- mProps - Variable in class edu.isi.pegasus.common.credential.impl.Abstract
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
The handle to the properties object.
- mProps - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
The handle to the properties object.
- mProps - Variable in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
Handle to Pegasus Properties
- mProps - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The handle to the PegasusProperties
.
- mProps - Variable in class edu.isi.pegasus.planner.client.Executable
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.cluster.Abstract
-
The handle to the properties object holding all the properties.
- mProps - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
The handle to the properties object holding all the properties.
- mProps - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
The handle to the properties object holding all the properties.
- mProps - Variable in class edu.isi.pegasus.planner.code.generator.Abstract
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The handle to Pegasus Properties.
- mProps - Variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.generator.Metrics
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The properties object holding all the properties.
- mProps - Variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The object holding all the properties pertaining to the VDS system.
- mProps - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
The handle to the properties object.
- mProps - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
The handle to the properties object.
- mProps - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
The handle to the properties object.
- mProps - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
The handle to the properties object.
- mProps - Variable in class edu.isi.pegasus.planner.parser.Parser
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The handle to the properties file.
- mProps - Variable in class edu.isi.pegasus.planner.partitioner.ClustererCallback
-
The handle to the properties object.
- mProps - Variable in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan
-
The handle to Pegasus Properties.
- mProps - Variable in class edu.isi.pegasus.planner.partitioner.Partitioner
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
Handle to the properties available.
- mProps - Variable in class edu.isi.pegasus.planner.ranking.GetDAX
-
The properties passed to the client.
- mProps - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The handle to the properties passed to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The handle to the properties passed to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
The handle to the properties passed to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The handle to the pegasus properties.
- mProps - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.selector.replica.Default
-
The properties object containing the properties passed to the planner.
- mProps - Variable in class edu.isi.pegasus.planner.selector.replica.Local
-
The properties object containing the properties passed to the planner.
- mProps - Variable in class edu.isi.pegasus.planner.selector.site.Abstract
-
The properties passed to Pegasus at runtime.
- mProps - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The handle to the properties.
- mProps - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The handle to the properties object holding the properties relevant to
Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The handle to the properties object holding the properties relevant to
Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
The handle to the properties object holding the properties relevant to
Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.transfer.sls.Condor
-
The handle to the properties.
- mProps - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The handle to the properties.
- mProps - Variable in class edu.isi.pegasus.planner.transfer.TPT
-
The handle to the properties object holding the properties relevant to
Pegasus.
- mPropsInSubmitDir - Variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The pointer to the properties file that is written out in the submit directory.
- mProtocol - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
The protocol used by the file server.
- mQueue - Variable in class edu.isi.pegasus.planner.partitioner.BFS
-
The first in first out queue, that manages the set of gray vertices in a
breadth first search.
- mQueue - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator
-
The first in first out queue, that manages the set of gray vertices in a
breadth first search.
- mQueue - Variable in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
-
The internal list of nodes that contains the nodes to be traversed.
- mQueue - Variable in class edu.isi.pegasus.planner.partitioner.Label
-
The first in first out queue, that manages the set of gray vertices in a
breadth first search.
- mRandom - Static variable in class edu.isi.pegasus.planner.common.PegRandom
-
The object containing the instance
of the java.util.Random class.
- mRandomDirName - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
If the genRandomDir flag is set, then this contains the name of
the random directory.
- mRank - Variable in class edu.isi.pegasus.planner.ranking.Ranking
-
Rank of the dax.
- mRank - Variable in class edu.isi.pegasus.planner.selector.replica.Regex.Rank
-
The rank value.
- MRC - Class in edu.isi.pegasus.planner.catalog.replica.impl
-
A multiple replica catalog implementation that allows users to query
different multiple catalogs at the same time.
- MRC() - Constructor for class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
The default constructor.
- mRCB - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The handle to the replica catalog bridge.
- mRCBridge - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The bridge to the Replica Catalog.
- mRCBridge - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The bridge to the Replica Catalog.
- mRCDown - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
A boolean variable to desingnate whether the RLI queried was down or not.
- mRCHandle - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The handle to the replica catalog.
- mRCList - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
The list of replica catalogs that need to be queried for.
- mRedEng - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The handle to the Reduction Engine that performs reduction on the graph.
- mReducedDag - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The reduced Dag object which is got from the Reduction Engine.
- mReducedDag - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
the reduced dag object which is
returned.
- mRefiner - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The handle to the refiner that loaded this implementation.
- mRegexExpression - Static variable in class edu.isi.pegasus.common.util.CondorVersion
-
Store the regular expressions necessary to parse the output of
condor_version.
- mRegexExpression - Variable in class edu.isi.pegasus.planner.client.SubmitDirectoryFilenameFilter
-
Store the regular expressions necessary to parse kickstart output files
- mRegexExpression - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Store the regular expressions necessary to match the * properties.
- mRegexExpression - Static variable in class edu.isi.pegasus.planner.common.RunDirectoryFilenameFilter
-
Store the regular expressions necessary to parse kickstart output files
- mRegexExpression - Static variable in class edu.isi.pegasus.planner.parser.pdax.RunDirectoryFilenameFilter
-
Store the regular expressions necessary to parse kickstart output files
- mRegexExpression - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Store the regular expressions necessary to parse the basename from the worker
package url to retrieve the version of pegasus.
- mRegexExpression - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.KickstartOutputFilenameFilter
-
Store the regular expressions necessary to parse kickstart output files
- mRegFiles - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
The collection of FileTransfer
objects containing the
files that need to be registered.
- mRegister - Variable in class edu.isi.pegasus.planner.dax.File
-
Should the file be registered in the replica catalog
- mRegName - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
The name of the registration job.
- mRelationsMap - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook
-
A map containing the relations between the jobs making up the partition.
- mRelationsMap - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook
-
A map containing the relations between the jobs making up the partition.
- mRelationsMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The map indexed by compute jobnames that contains the list of stagin job
names that are being added during the traversal of the workflow.
- mRelativeDir - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The relative directory for the submit directory and remote execution directory
- mRelativeSubmitDir - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The relative directory for the submit directory.
- mRelativeSubmitDirectory - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The relative submit directory for this run.
- mRemoteTransfers - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The handle to the Remote Transfers State machinery.
- mRemoveEng - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The engine that ends up creating the cleanup dag for the dag.
- mReplacementTable - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
Replacement table, that identifies the corresponding fat job for a job.
- mReplicaCatalog - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The handle to the main Replica Catalog.
- mReplicaCatalogs - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
The list of replica catalog associated with the site.
- mReplicaSelector - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The handle to the replica selector that is to used to select the various
replicas.
- mReplicaStore - Variable in class edu.isi.pegasus.planner.classes.ADag
-
Handle to the replica store that stores the replica catalog
user specifies in the DAX
- mReplicaStore - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Handle to the replica store that stores the replica catalog
user specifies in the DAX
- mReplicaStore - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The replica store in which we store all the results that are queried from
the main replica catalog.
- mRequestID - Variable in class edu.isi.pegasus.planner.classes.ADag
-
The optional request ID associated with the DAX.
- mRequestID - Variable in class edu.isi.pegasus.planner.client.RankDAX
-
The request id to get the daxes.
- mRequestID - Variable in class edu.isi.pegasus.planner.ranking.Rank
-
The optional request id.
- mRequestID - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The request id associated with the DAX.
- mResMap - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The mapping to siteHandle to all the jobs that are mapped to it
mapping to siteHandle(String) to Set
- mResMapLeaves - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The mapping of siteHandle to all subset of the jobs mapped to it that are
leaves in the workflow mapping to siteHandle(String) to Set.
- mResMapRoots - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The mapping of siteHandle to all subset of the jobs mapped to it that are
leaves in the workflow mapping to siteHandle(String) to Set.
- mResourceContact - Variable in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
The contact string to the resource.
- mResourceID - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The Id of the resource on which the transformation
is installed.
- mResult - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogParser
-
The final result constructed.
- mRLIUrl - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
The Replica Location Index URL got from vds.rls.url property
- mRoot - Static variable in class edu.isi.pegasus.common.logging.logger.Log4j
-
Keeps track of log4j's root logger as singleton.
- mRoot - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
The root node for the graph that is constructed.
- mRoot - Variable in class edu.isi.pegasus.planner.partitioner.Partitioner
-
The root node of the graph from where to start the BFS.
- mRootWorkflowUUID - Variable in class edu.isi.pegasus.planner.classes.ADag
-
The Root Workflow UUID.
- mRunningJobs - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The number of jobs in the remote queue that are running at the remote site.
- mRuntime - Variable in class edu.isi.pegasus.planner.classes.Job
-
The expected runtime for a job.
- mRuntime - Variable in class edu.isi.pegasus.planner.ranking.Ranking
-
The runtime of the dax in seconds.
- mSanitizePath - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
A boolean storing whether to sanitize paths or not
- mScanner - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
The access to the lexical scanner is stored here.
- mSCFile - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites
-
- mSCHandle - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The handle to the site catalog.
- mScheduledDAG - Variable in class edu.isi.pegasus.planner.cluster.Abstract
-
ADag object containing the jobs that have been scheduled by the site
selector.
- mScheduledDAG - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
ADag object containing the jobs that have been scheduled by the site
selector.
- mScheduledSite - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The site where a job is scheduled to run.
- mScheduler - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
The scheduler type with which it interfaces.
- mScratch - Variable in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
The scratch area on the head node.
- mScratch - Variable in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
The scratch area on the head node.
- mSearchFiles - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The Vector of String
objects containing the logical
filenames of the files whose locations are to be searched in the
Replica Catalog.
- mSelector - Variable in class edu.isi.pegasus.planner.selector.site.Group
-
The handle to the internal site selector that is used to schedule jobs
amongst the groups.
- mSeparator - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The nice separator, define once, use often.
- mSeparator - Static variable in interface edu.isi.pegasus.planner.code.GridStart
-
The File separator to be used on the submit host.
- mSeparator - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The file Separator to be used on the submit host.
- mSeqExecGridStartUsed - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Boolean to track whether the gridstart used in PegasusLite or not
- mSetupMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The map indexed by staged executable logical name.
- mSetupTransferImplementation - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The transfer implementation to be used for staging in the data as part
of setup job.
- mSetXBit - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Whether kickstart should set the X Bit on the staged executables.
- MSG - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- MSG_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- mSharedDirectory - Variable in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
The shared directory on the node.
- mSIBundleMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
The map containing the stage in bundle values indexed by the name of the
site.
- mSingletonInstance - Static variable in class edu.isi.pegasus.common.logging.LogFormatterFactory
-
Holds a singleton instance that is populated via the loadSingletonInstance()
method.
- mSingletonInstance - Static variable in class edu.isi.pegasus.common.logging.LogManagerFactory
-
Holds a singleton instance that is populated via the loadSingletonInstance()
method.
- mSite - Variable in class edu.isi.pegasus.planner.dax.PFN
-
- mSite - Variable in class edu.isi.pegasus.planner.provenance.NetloggerCallback
-
The logical site where the job was run.
- mSite - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer
-
The site for which these transfers are grouped.
- mSite - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
The logical site where the job was run.
- mSite - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
The logical site where the job was run.
- mSiteCatalog - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
The map indexed by the site handle.
- mSiteMap - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Map containing the number of free nodes for each site.
- mSites - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
-
The set of sites that need to be parsed.
- mSites - Variable in class edu.isi.pegasus.planner.client.RankDAX
-
The list of grid sites where the daxes can run.
- mSites - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogParser
-
The set of sites that need to be parsed.
- mSites - Variable in class edu.isi.pegasus.planner.ranking.Rank
-
The list of candidate grid sites.
- mSites - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The list of sites where the workflow can run.
- mSiteSelector - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Handle to the site selector.
- mSiteSelectorPath - Variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The path to the site selector.
- mSiteStore - Variable in class edu.isi.pegasus.common.credential.impl.Abstract
-
The handle to the Site Catalog Store.
- mSiteStore - Variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
-
The SiteStore object where information about the sites is stored.
- mSiteStore - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The SiteStore object where information about the sites is stored.
- mSiteStore - Variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS
-
The SiteStore object where information about the sites is stored.
- mSiteStore - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
Stores sites in memory
- mSiteStore - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML3
-
Stores sites in memory
- mSiteStore - Variable in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
The handle to the RIC.
- mSiteStore - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The site store containing the sites that need to be used.
- mSiteStore - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Handle to the site catalog store
- mSiteStore - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The handle to the site catalog store.
- mSiteStore - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
The handle to the Site Catalog Store.
- mSiteStore - Variable in class edu.isi.pegasus.planner.code.generator.Shell
-
Handle to the Site Store.
- mSiteStore - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Handle to the site catalog store.
- mSiteStore - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Handle to the site catalog store.
- mSiteStore - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Handle to the site catalog store.
- mSiteStore - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
Handle to the stagingSite catalog.
- mSiteStore - Variable in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
Handle to the site catalog.
- mSiteStore - Variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
The Site Store handle.
- mSiteStore - Variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The handle to the SiteStore.
- mSiteStore - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
The handle to the Pool Info Provider.
- mSiteStore - Variable in class edu.isi.pegasus.planner.selector.site.Abstract
-
The handle to the site catalog.
- mSiteStore - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Handle to the site catalog.
- mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The handle to the Pool Info Provider.
- mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Handle to the SiteStore
- mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
The handle to the Site Catalog.
- mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.sls.Condor
-
The handle to the site catalog.
- mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The handle to the site catalog.
- mSiteToPegasusHomeMap - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Maps a site to the the directory where the pegasus worker package has
been untarred during workflow execution.
- mSize - Variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The size of the file.
- mSize - Variable in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
-
The initial size of the buffer.
- mSize - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
The size.
- mSizeUnits - Variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage
-
The size units.
- mSLS - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The handle to the SLS implementor
- mSLS - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
The handle to the SLS implementor
- mSLS - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The handle to the SLS implementor
- mSLS - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
The handle to the SLS implementor
- mSLS - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The handle to the SLS implementor
- mSortedRegexSet - Variable in class edu.isi.pegasus.planner.selector.replica.Regex
-
The Set of regular expressions that orders the regex expressions to use
in ascending order.
- mSource - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites
-
The default source to query for generating a site catalog.
- mSourceMap - Variable in class edu.isi.pegasus.planner.classes.FileTransfer
-
The map containing all the source urls keyed by the pool id/name.
- mSpaceList - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace
-
The list of Space reading objects.
- mSpaceStore - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
The SpaceUsage object created during the callback construction.
- mSRMServiceURLToMountPointMap - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
A map that associates the site name with the SRM server url and mount point.
- mStack - Variable in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
The Stack of event objects maintained internally
- mStack - Variable in class edu.isi.pegasus.common.util.XMLWriter
-
- mStack - Variable in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
The stack of objects kept around.
- mStageinLocalBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The BundleValue that evaluates for local stage in jobs.
- mStageInLocalMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The map containing the list of stage in transfer jobs that are being
created for the workflow indexed by the execution poolname.
- mStageInLocalMapPerLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
A map indexed by site name, that contains the pointer to the stage in
PoolTransfer objects for that site.
- mStageInMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
A map indexed by execution sites.
- mStageInRemoteBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The BundleValue that evaluates for remote stage-in jobs.
- mStageInRemoteMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The map containing the list of stage in transfer jobs that are being
created for the workflow indexed by the execution poolname.
- mStageInRemoteMapPerLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
A map indexed by site name, that contains the pointer to the symlink stage
in PoolTransfer objects for that site.
- mStageOutBaseDirectory - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The base path for the stageout directory on the output site where all
the files are staged out.
- mStageOutLocalBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The BundleValue that evaluates for local stage out jobs.
- mStageOutLocalMapPerLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
A map indexed by site name, that contains the pointer to the local stage out
PoolTransfer objects for that site.
- mStageOutRemoteBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The BundleValue that evaluates for remote stage out jobs.
- mStageOutRemoteMapPerLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
A map indexed by site name, that contains the pointer to the remote stage out
PoolTransfer objects for that site.
- mStageSLSFile - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Boolean to track whether to stage sls file or not
- mStageSLSFile - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Boolean to track whether to stage sls file or not
- mStagingSite - Variable in class edu.isi.pegasus.planner.classes.Job
-
The staging site associated with the job
- mStagingSitesMap - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
A map that maps an execution site to a staging site.
- mStarReplacements - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Replacement 2 D Array for the above properties.
- mStarted - Variable in class edu.isi.pegasus.common.util.StreamGobbler
-
A boolean indicating whether the thread has started or not.
- mStartSeparator - Static variable in class edu.isi.pegasus.planner.code.generator.Stork
-
The nice start separator, define once, use often.
- mStartTime - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The start time for hte planning.
- mStartTime - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The estimated start time for a job.
- mStartTime - Variable in class edu.isi.pegasus.planner.selector.site.heft.Processor
-
The start time of the current scheduled job.
- mState - Variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
Stores the state as an integer.
- mState - Variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
Stores the state as an integer.
- mStateMap - Variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
The map indexed by site name, that contains the state for all the sites.
- mStateMap - Variable in class edu.isi.pegasus.planner.transfer.TPT
-
The map indexed by site name, that contains the state for all the sites.
- mStatements - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Maintains an essential set of prepared statement, ready to use.
- mStatements - Variable in class edu.isi.pegasus.planner.catalog.work.Database
-
Maintains an essential set of prepared statement, ready to use.
- mStatements - Variable in class edu.isi.pegasus.planner.ranking.GetDAX
-
Maintains an essential set of prepared statement, ready to use.
- mStderr - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
-
- mStdin - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
-
- mStdout - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
-
- mStorage - Variable in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
The storage area on the head node.
- mStorage - Variable in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
The storage area on the head node.
- mStorageDir - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
This contains the storage directory relative to the se mount point of the
pool.
- mStorageDir - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The storage mount point for the grid ftp server.
- mStorageDir - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
This contains the storage directory relative to the se mount point of the
pool.
- mStorageDir - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
This contains the storage directory relative to the se mount point of the
pool.
- mStore - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
The internal map that maps a site catalog entry to the site handle.
- mStore - Variable in class edu.isi.pegasus.planner.classes.ReplicaStore
-
The replica store.
- mStore - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
The map indexed by the id of the GraphNode
, used for storing
the nodes of the Graph.
- mStore - Variable in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
-
The StringBuffer store.
- mStore - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsage
-
The map that stores the list of space objects indexed by site name.
- mStore - Variable in class edu.isi.pegasus.planner.visualize.WorkflowMeasurements
-
The map that stores the list of Measurement
indexed by site name.
- mStyleFactory - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Handle to the Style factory, that is used for this workflow.
- mSubInfoMap - Variable in class edu.isi.pegasus.planner.cluster.Abstract
-
A Map to store all the job(Job) objects indexed by their logical ID found in
the dax.
- mSubInfoMap - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
A Map to store all the job(Job) objects indexed by their logical ID found in
the dax.
- mSubmit - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
If specified, then it submits to the underlying CondorG using the
kickstart-Condorscript provided.
- mSubmitDir - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The submit exectionSiteDirectory where the submit files are being generated for
the workflow.
- mSubmitDir - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
The submit directory where the submit files are being generated for
the workflow.
- mSubmitDir - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The submit directory where the submit files are being generated for
the workflow.
- mSubmitDir - Variable in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript
-
The submit directory where the submit files are being generated for
the workflow.
- mSubmitDir - Variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The submit directory where the submit files are being generated for
the workflow.
- mSubmitDirectory - Variable in class edu.isi.pegasus.planner.classes.ADag
-
The root of the submit directory hierarchy for the DAG.
- mSubmitDirectory - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The root of the submit directory where all the submit directories for
the various partitions reside.
- mSubmitDirectory - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The submit directory where the output files have to be written.
- mSubmitDirectory - Variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The submit directory for the workflow.
- mSubmitFileDir - Variable in class edu.isi.pegasus.planner.code.generator.Abstract
-
The directory where all the submit files are to be generated.
- mSubmitFileDir - Variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The directory where all the submit files are to be generated.
- mSubmitFileDir - Variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
The directory where all the submit files are to be generated.
- mSubmitFileDir - Variable in class edu.isi.pegasus.planner.code.generator.Metrics
-
The directory where all the submit files are to be generated.
- mSubmitFileDir - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The directory where all the submit files are to be generated.
- mSubmitFileDir - Variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The directory where all the submit files are to be generated.
- mSymbolTable - Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
Singleton implementation of a symbol table for reserved words.
- mSyncJobMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Maps the site name to the current synch job
- mSysInfo - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
The System Information for the Site.
- mSysInfo - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The system information of the remote site.
- mSysInfo - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The System Info for the transformation.
- mTCFile - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
The path to the file based TC.
- mTCFile - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
The path to the file based TC.
- mTCFile - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
The path to the file containing the pool information.
- mTCFileHandle - Static variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
The singleton handler to the contents of the transformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
The handle to the tranformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The handle to the transformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The handle to the transformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Handle to the Transformation Catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The handle to the transformation catalog
- mTCHandle - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Handle to Transformation Catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Handle to Transformation Catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The handle to the transformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The handle to the transformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
The handle to the transformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The handle to the transformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
The handle to the Transformation Catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The handle to the transformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The handle to the Transformation Catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The handle to the transformation catalog.
- mTCMap - Variable in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
Handle to the TCMap
- mTCMap - Variable in class edu.isi.pegasus.planner.classes.TCMap
-
The TCMap for a dag is stored in this HashMap.
- mTCMapper - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The handle to the Transformation Mapper.
- mTCMapper - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
The handle to the transformation catalog mapper object that caches the
queries to the transformation catalog, and indexes them according to
lfn's.
- mTCMapper - Variable in class edu.isi.pegasus.planner.selector.site.Abstract
-
The handle to the TCMapper object.
- mTCMapper - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Handle to the TCMapper.
- mTCMode - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
Defines the read mode for transformation catalog.
- mTCStore - Variable in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
The internal store map.
- mTCStore - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
The transformation store containing the transformations after parsing the
file.
- mTempLogFile - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The name of the log file in the /tmp directory
- mTextContent - Variable in class edu.isi.pegasus.planner.parser.Parser
-
Holds the text in an element (text between start and final tags if any).
- mTextParser - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Instance to the TextParser.
- mTextString - Variable in class edu.isi.pegasus.planner.parser.Parser
-
A String that holds the contents of data passed as text.
- mTimeList - Variable in class edu.isi.pegasus.planner.visualize.JobMeasurements
-
The corresponding list of Date objects signifying the times at which
an event happened.
- mTimeout - Variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The timeout value in seconds after which to timeout, in the case
where the external site selector does nothing (nothing on stdout
nor stderr).
- mTimeUnits - Variable in class edu.isi.pegasus.planner.client.PlotNodeUsage
-
The time units.
- mTimeUnits - Variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage
-
The time units.
- mTimeUnits - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus
-
The time units.
- mTimeUnits - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus
-
The time units.
- mTimingSource - Variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage
-
The timing source used to order the events.
- mTopNum - Variable in class edu.isi.pegasus.planner.client.RankDAX
-
The top n workflows to execute and put in the rankings file
- mTotalMem - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The total memory that the jobmanager reports.
- mTotalNodes - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
The number of total nodes
- mTotalNodes - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The total number of nodes that the jobmanager reports are on the remote
site.
- mTotalSize - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
The total size of file system.
- mTotalSize - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The total storage space at the grid ftp server.
- mTotalSize - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
The total space available at the file system under this directory.
- mTPT - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The handle to the Third Party State machinery.
- mTransEng - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The handle to the Transfer Engine that adds the transfer nodes in the
graph to transfer the files from one site to another.
- mTransfer - Variable in class edu.isi.pegasus.planner.dax.File
-
Should the file be transferred on generation.
- mTransferFlag - Variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The transfer flag associated with the file containing tristate of
transfer,dontTransfer and optional.
- mTransferFromSubmitHost - Variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
Boolean indicating whether we need to transfer dirmanager from the submit
host.
- mTransferType - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
The type of the transfers the job is responsible for.
- mTransferWorkerPackage - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Boolean indicating whether worker package transfer is enabled or not
- mTransferWorkerPackage - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Boolean indicating whether user wants the worker package to be transferred
or not.
- mTransformations - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
The List of Transformation objects
- mTransformationStore - Variable in class edu.isi.pegasus.planner.classes.ADag
-
Handle to the transformation store that stores the transformation catalog
user specifies in the DAX
- mTransformationStore - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Handle to the transformation store that stores the transformation catalog
user specifies in the DAX
- mTransientRC - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The transient replica catalog that tracks the files created or transferred
during the workflow
- mTransientRC - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
Handle to the transient replica catalog.
- mTransientRC - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
A SimpleFile Replica Catalog, that tracks all the files that are being
materialized as part of workflow executaion.
- mTransientRC - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The handle to the transient replica catalog.
- mTreatCacheAsRC - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
A boolean indicating whether the cache file needs to be treated as a
replica catalog or not.
- mTreeMap - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
The Tree Map which stores the contents of the file.
- mTXContainers - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
The list of TransferContainer
that correspond to
each transfer job.
- mTXFERImplTable - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
An internal table that resolves the old transfer mode property, to
the corresponding transfer implementation.
- mTXFERRefinerTable - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
An internal table that resolves the old transfer mode property, to
the corresponding transfer refiner.
- mTXInterImplementation - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The inter transfer implementation that the refiner requires.
- mTXName - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
The name of the transfer job.
- mTXRefiner - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The handle to the transfer refiner that adds the transfer nodes into the
workflow.
- mTXSelector - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
The handle to the transformation selector, that ends up selecting
what transformations to pick up.
- mTXStageInImplementation - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The stage-in transfer implementation that the refiner requires.
- mTXStageOutImplementation - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The stage-out transfer implementation that the refiner requires.
- mTXSymbolicLinkImplementation - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The stage-in symbolic link transfer implementation that refiner requires.
- mType - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
The grid type associated with this instance.
- mType - Variable in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
The type of the replica catalog implementation to use.
- mType - Variable in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
Specifies what type of resource you are authenticating to.
- mType - Variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The type associated with the file.
- mType - Variable in class edu.isi.pegasus.planner.client.PartitionDAX
-
The type of the partitioner to be used.
- mType - Variable in class edu.isi.pegasus.planner.dax.MetaData
-
Metadata type
- MULTIPLE_READ - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Constants for multiple read.
- MULTIPLE_READ - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TCMode
-
- MultipleFTPerXFERJob - Interface in edu.isi.pegasus.planner.transfer
-
An empty interface, that allows for grouping of implementations that can
handle multiple file transfers per transfer job like old guc and Stork.
- MultipleFTPerXFERJobRefiner - Class in edu.isi.pegasus.planner.transfer
-
The refiner interface, that determines the functions that need to be
implemented to add various types of transfer nodes to the workflow.
- MultipleFTPerXFERJobRefiner(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.MultipleFTPerXFERJobRefiner
-
The overloaded constructor.
- MultipleLook - Class in edu.isi.pegasus.planner.partitioner
-
This class ends up writing a partitioned dax, that corresponds to one
partition as defined by the Partitioner.
- MultipleLook(String, String) - Constructor for class edu.isi.pegasus.planner.partitioner.MultipleLook
-
The overloaded constructor.
- MultipleLook.MyCallBackHandler - Class in edu.isi.pegasus.planner.partitioner
-
The internal callback handler for the DAXParser in Euryale.
- MultipleLook.MyCallBackHandler() - Constructor for class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler
-
The empty constructor.
- mUnit - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
The units in which the size is stored.
- mUniverse - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The VDS universe with which the jobmanager is associated with.
- mUpwardRank - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The upward rank for a node.
- mURL - Variable in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
The url for the catalog.
- mURL - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The url string of the gridftp that contains the host and the port.
- mURL - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The url to the jobmanager on the remote site.
- mUrl - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Stores the database url
- mURL - Variable in class edu.isi.pegasus.planner.dax.PFN
-
- mURLPrefix - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
The URL prefix for the server.
- mUseDoubleNegative - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
A boolean indicating whether to use the double negative flags for
transfer and register or not.
- mUseForce - Variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Whether to use force option for the transfer executable or not.
- mUseForce - Variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Whether to use force option for the transfer executable or not.
- mUseFullPathToGridStart - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Boolean indicating whether to use full path or not
- mUseMkdir - Variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
Whether we want to use dirmanager or mkdir directly.
- mUseMkdir - Variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
Whether we want to use dirmanager or mkdir directly.
- mUser - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The user who planned the workflow.
- mUser - Variable in class edu.isi.pegasus.planner.client.CPlanner
-
The user name of the user running Pegasus.
- mUser - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The username of the user running the program.
- mUser - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The user name of the user running Pegasus.
- mUser - Variable in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan
-
The username of the user running the program.
- mUsername - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Stores the user name
- mUserOpts - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Handle to the Singleton instance containing the options passed to the
planner at run time.
- mUserSpecifiedSourceLocation - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The user specified location from where to stage the worker packages.
- mUses - Variable in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
The list of dependant executables
- mUses - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
-
- mUses - Variable in class edu.isi.pegasus.planner.dax.Transformation
-
List of executable of files used by the transformation
- mUsesLinkType - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The uses link type for a file when uses tag is parsed.
- mUsesPegasusFile - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The PegasusFile object that a uses tag corresponds to.
- mUseStatInfo - Variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage
-
A boolean indicating to use stat information for estimating
directory sizes.
- mUseStatInfo - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus
-
A boolean indicating whether to use stat info or not.
- mUseStatInfo - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus
-
A boolean indicating whether to use stat info or not.
- mUseStatInfo - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
Boolean indicating whether to use stat data or not for computing directory
sizes.
- mUseSymLinks - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
This member variable if set causes the source url for the pull nodes from
the RLS to have file:// url if the pool attributed associated with the pfn
is same as a particular jobs execution pool.
- mUseUserSpecifiedSourceLocation - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Boolean indicating whether to use the user specified location or not
- mValue - Variable in class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
The value of the connection key.
- mValue - Variable in class edu.isi.pegasus.planner.classes.Profile
-
- mValue - Variable in class edu.isi.pegasus.planner.dax.MetaData
-
Metadata value
- mValue - Variable in class edu.isi.pegasus.planner.dax.Profile
-
Value of the profile
- mValue - Variable in class edu.isi.pegasus.planner.invocation.Boot
-
The text value
- mValue - Variable in class edu.isi.pegasus.planner.invocation.CPU
-
The text value
- mValue - Variable in class edu.isi.pegasus.planner.invocation.Stamp
-
The text value
- mValue - Variable in class edu.isi.pegasus.planner.invocation.Uname
-
The text value
- mValue - Variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
This instance variable captures the token value for the reserved word.
- mValue - Variable in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
-
The value for the Label.
- mVDSArchToNMIArch - Static variable in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
-
The map storing architecture to corresponding NMI architecture platforms.
- mVDSOSToNMIOS - Static variable in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
-
The map storing OS to corresponding NMI OS platforms.
- mVDSProps - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The list of VDS properties set at runtime by the user on commandline.
- mVDSToPegasusPropertiesTable - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
The handle to the internal map, that maps vds properties to pegasus
properties.
- mVersion - Variable in class edu.isi.pegasus.common.util.CondorVersion.CondorVersionCallback
-
The version detected.
- mVersion - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The mVersion of the transformation.
- mVersion - Variable in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
The version
- mVersion - Variable in class edu.isi.pegasus.planner.client.Executable
-
It stores the verison of the Griphyn Virtual Data System software.
- mVersion - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
-
- mVersion - Variable in class edu.isi.pegasus.planner.dax.Executable
-
Version of the executable
- mVersion - Variable in class edu.isi.pegasus.planner.dax.File
-
The logical version of the file.
- mVersion - Variable in class edu.isi.pegasus.planner.dax.Transformation
-
Version of the transformation
- mVersionPattern - Static variable in class edu.isi.pegasus.planner.dax.Patterns
-
- mvExecPools - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
The List containing the user specified list of pools on which he wants
the dag to run.
- mvExecPools - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
List of execution pools on which the user wants the Dag to be executed.
- mVJobInpFiles - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Holds the input files for a particular job making the aDag.
- mVJobOutFiles - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Holds the output files for a particular job making the aDag.
- mVO - Variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
-
The vo for which to query MYOSG
- mVO - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The VO to which the user belongs to.
- mVO - Variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS
-
The VO to which the user belongs to.
- mVO - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites
-
- mVOGroup - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The VOGroup to which the user belonged to.
- mVOGroup - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The VOGroup to which the user belongs to.
- mVOInfo - Variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS
-
- mVORSHost - Variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS
-
The mVORSHost where VORS is running.
- mVORSPort - Variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS
-
The VORS mVORSPort.
- mVSubInfo - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Contains Job objects.
- mWFMeasurements - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
-
The WorkflowMeasurements object created during the callback construction.
- mWFMetrics - Variable in class edu.isi.pegasus.planner.classes.DagInfo
-
The workflow metric objects that contains metrics about the workflow being
planned.
- mWFMetrics - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The metrics about the workflow.
- mWhat - Variable in class edu.isi.pegasus.planner.dax.Invoke
-
What to invoke
- mWhen - Variable in class edu.isi.pegasus.planner.dax.Invoke
-
WHen to Invoke
- mWholeCommandString - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
All the arguments to a particular job.
- mWord - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback
-
The word that is to be searched for.
- mWordLength - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback
-
The length of the word to be searched for.
- mWorkDir - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
The work dir path from the properties.
- mWorkDir - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Contains the information about the work directory on the remote site.
- mWorkDir - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
The path to the work directory.
- mWorkDir - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
The working directory relative to the mount point of the execution pool.
- mWorkDir - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The working directory relative to the mount point of the execution pool.
- mWorkerFS - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
The handle to the worker node filesystem.
- mWorkerNodeExecution - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
A boolean indicating whether to have worker node execution or not.
- mWorkerNodeExecution - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
A boolean indicating whether to have worker node execution or not.
- mWorkerNodeExecution - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Boolean indicating worker node execution.
- mWorkerNodeExecution - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
A boolean indicating whether to have worker node execution or not.
- mWorkerNodeExecution - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
A boolean indicating whether we are doing worker node execution or not.
- mWorkerPackageMap - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
Worker Package Map, that indexes execution site with the location of the
corresponding worker package in the submit directory
- mWorkerPackageMap - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
A map indexed by execution site and the corresponding worker package
location in the submit directory
- mWorkerPackageStagingEnabled - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Boolean indicating whether worker package staging is enabled or not.
- mWorkerShared - Variable in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
-
The directory shared only amongst the worker nodes.
- mWorkerShared - Variable in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage
-
The directory shared only amongst the worker nodes.
- mWorkflow - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
- mWorkflow - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
The Graph instance that stores the abstract workflow as a Graph.
- mWorkflow - Variable in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
The workflow object being worked upon.
- mWorkflow - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
The workflow object being worked upon.
- mWorkflow - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The workflow in the graph format, that needs to be scheduled.
- mWorkflowID - Variable in class edu.isi.pegasus.planner.client.NetloggerExitcode
-
The workflow id.
- mWorkflowID - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
the workflow id used.
- mWorkflowRefinementStarted - Variable in class edu.isi.pegasus.planner.classes.ADag
-
Boolean indicating whether the refinement process on the workflow has
started or not.
- mWorkflowUUID - Variable in class edu.isi.pegasus.planner.classes.ADag
-
The UUID associated with the workflow.
- mWriteHandle - Variable in class edu.isi.pegasus.planner.code.generator.Shell
-
The handle to the output file that is being written to.
- mWriteHandle - Variable in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
The write handle to the xml file being written.
- mWriteHandle - Variable in class edu.isi.pegasus.planner.partitioner.PDAXWriter
-
The write handle to the xml file being written.
- mWriteLine - Variable in class edu.isi.pegasus.common.util.XMLWriter
-
- mWriter - Variable in class edu.isi.pegasus.common.util.XMLWriter
-
- mWriter - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
Handle the XML writer
- mXMLStore - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
The XML Producer object that records the actions.
- mXMLStore - Variable in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
The XML Producer object that records the actions.
- mXMLStore - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
The XML Producer object that records the actions.
- mXMLStore - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
The XML Producer object that records the actions.
- mXMLStore - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The XML Producer object that records the actions.
- MYOSG - Class in edu.isi.pegasus.planner.catalog.site.impl
-
This class implements the SiteCatalog interface
- MYOSG() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
-
The default constructor.
- MYOSGSiteCatalogParser - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.util
-
This class uses the Xerces SAX2 parser to validate and parse an XML.
- MYOSGSiteCatalogParser() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
-
The default Constructor.
- MYOSGSiteCatalogParser(List<String>) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
-
- MYOSGSiteCatalogParser(PegasusProperties, List<String>) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
-
- MYOSGSiteCatalogUtil - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.util
-
Utility class for converting the Facade object to SiteCatalogEntry object
- MYOSGSiteCatalogUtil() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogUtil
-
- MYOSGSiteConstants - Interface in edu.isi.pegasus.planner.catalog.site.impl.myosg.util
-
- MYOSGSiteEnvironmentInfo - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.classes
-
This class extends AbstractSiteCatalogResource and stores MYOSG Site
Environment Information
- MYOSGSiteEnvironmentInfo(int) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
-
- MYOSGSiteInfo - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.classes
-
This class extends AbstractSiteCatalogResource and stores MYOSG Site Information
- MYOSGSiteInfo(int) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfo
-
- myOsgSiteInfo - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- MYOSGSiteInfoFacade - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.classes
-
- MYOSGSiteInfoFacade(MYOSGSiteInfo) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- MYOSGSiteResourceInfo - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.classes
-
This class extends AbstractSiteCatalogResource and stores MYOSG Site resource Information
- MYOSGSiteResourceInfo(int) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
-
- MYOSGSiteServiceInfo - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.classes
-
This class extends AbstractSiteCatalogResource and stores MYOSG Site service Information
- MYOSGSiteServiceInfo(int) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
-
- MYOSGSiteVOOwnershipInfo - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.classes
-
This class extends AbstractSiteCatalogResource and stores MYOSG Site service Information
- MYOSGSiteVOOwnershipInfo(int) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteVOOwnershipInfo
-
- MYOSGURLGenerator - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.util
-
This is an utility class which generates the MYOSG url.
- MYOSGURLGenerator() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGURLGenerator
-
- myquote(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Quotes an input string for XML attributes while converting nulls.
- S3_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
- S3CFG - Class in edu.isi.pegasus.common.credential.impl
-
A convenience class that allows us to determine the path to the user s3cfg file.
- S3CFG() - Constructor for class edu.isi.pegasus.common.credential.impl.S3CFG
-
The default constructor.
- S3CFG - Static variable in class edu.isi.pegasus.planner.namespace.ENV
-
The name of the environment variable that specifies the s3cfg path
- S3CFG_FILE_VARIABLE - Static variable in class edu.isi.pegasus.common.credential.impl.S3CFG
-
The name of the environment variable that specifies the path to the
s3cfg file.
- sanitize(List) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Sanitizes a tuple list .
- sanitize(ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Sanitizes a tuple .
- sanitizePath(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
A small utility method that santizes the url, converting it from
relative to absolute.
- sanitizePathForProperty(Properties, String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Santizes the value in the properties .
- SANITY_CHECK_ERROR_MESSAGE_PREFIX - Static variable in class edu.isi.pegasus.planner.selector.replica.Local
-
Sanity Check Error Message.
- sanityCheck(File) - Static method in class edu.isi.pegasus.planner.client.CPlanner
-
Checks the destination location for existence, if it can
be created, if it is writable etc.
- sanityCheck(File) - Static method in class edu.isi.pegasus.planner.client.RankDAX
-
Checks the destination location for existence, if it can
be created, if it is writable etc.
- sanityCheck(File) - Static method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Checks the destination location for existence, if it can
be created, if it is writable etc.
- sanityCheck(File) - Static method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Checks the destination location for existence, if it can
be created, if it is writable etc.
- sanityCheck(File) - Static method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Checks the destination location for existence, if it can
be created, if it is writable etc.
- sanityCheck(File) - Static method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Checks the destination location for existence, if it can
be created, if it is writable etc.
- sanityCheck(File) - Static method in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan
-
Checks the destination location for existence, if it can
be created, if it is writable etc.
- sanityCheck(File) - Static method in class edu.isi.pegasus.planner.ranking.GetDAX
-
Checks the destination location for existence, if it can
be created, if it is writable etc.
- sanityCheckOnDirectory(File) - Static method in class edu.isi.pegasus.common.logging.LogManager
-
Checks the destination location for existence, if it can
be created, if it is writable etc.
- sanityCheckOnFile(File) - Static method in class edu.isi.pegasus.common.logging.LogManager
-
Checks the destination location for existence, if it can
be created, if it is writable etc.
- sanityCheckOnProperties() - Method in class edu.isi.pegasus.planner.client.Executable
-
Does a sanity check on the properties to make sure that all the
required properties are loaded.
- sanityCheckOnVersion(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Sanity check on the version that this parser works on.
- SC_XML3_FILE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- SC_XML_FILE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- ScannerException - Exception in edu.isi.pegasus.planner.parser
-
This class is used to signal errors while scanning or parsing.
- ScannerException(LineNumberReader, String) - Constructor for exception edu.isi.pegasus.planner.parser.ScannerException
-
- ScannerException(int, String) - Constructor for exception edu.isi.pegasus.planner.parser.ScannerException
-
- SCClient - Class in edu.isi.pegasus.planner.client
-
A client to convert site catalog between different formats.
- SCClient() - Constructor for class edu.isi.pegasus.planner.client.SCClient
-
The default constructor.
- schedule(ADag, List) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Schedules the workflow using the heft.
- schedule(Graph, List, String) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Schedules the workflow according to the HEFT algorithm.
- SCHEDULED_SITE - Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The site where the job is scheduled.
- scheduleJob(String, long, long) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Schedules a job to a site.
- scheduleJob(long, long) - Method in class edu.isi.pegasus.planner.selector.site.heft.Processor
-
Schedules a job on to a processor.
- scheduleJob(long, long) - Method in class edu.isi.pegasus.planner.selector.site.heft.Site
-
Schedules a job to the site.
- scheduleJobs(ADag, List) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
It schedules a list of jobs on the execution pools by calling out to the
site selector specified.
- SCHEDULER_UNIVERSE - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
- SCHEDULER_UNIVERSE - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The condor universe key value for scheduler universe.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
The "not-so-official" location URL of the DAX schema definition.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
The "not-so-official" location URL of the VDLx schema definition.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.dax.ADAG
-
The "not-so-official" location URL of the DAX schema definition.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
The "not-so-official" location URL of the invocation record definition.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
The "not-so-official" location URL of the VDLx schema definition.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The "not-so-official" location URL of the DAX schema definition.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
The "not-so-official" location URL of the Site Catalog Schema.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.parser.PDAXParser
-
The "not-so-official" location URL of the DAX schema definition.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.parser.SiteCatalogParser
-
The "not-so-official" location URL of the Site Catalog Schema.
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
The "official" namespace URI of the site catalog schema.
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
uri namespace
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.client.DAXValidator
-
URI namespace for DAX schema.
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.dax.ADAG
-
The "official" namespace URI of the site catalog schema.
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
The "official" namespace URI of the invocation record schema.
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
uri namespace
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
URI namespace
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
uri namespace
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.parser.PDAXParser
-
URI namespace
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.parser.SiteCatalogParser
-
uri namespace
- SCHEMA_NAMESPACE_XSI - Static variable in class edu.isi.pegasus.planner.dax.ADAG
-
XSI SCHEMA NAMESPACE
- SCHEMA_VERSION - Static variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
The version to report.
- SCHEMA_VERSION - Static variable in class edu.isi.pegasus.planner.dax.ADAG
-
The version to report.
- scrapeSite(String, String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.SiteScrapper
-
Scarps a web site and stores it in a file
- searchMDS(LdapContext, String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
Still Thinking how to eable this option.
- secondPass() - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine
-
In the second pass we find all the
parents of the nodes which have been
found to be in the RC.
- SEED - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- SEED_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- SEED_ID - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
-
- SEED_NAME - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- SEED_NAME - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
-
- selectFileServer() - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType
-
Selects a random file server and returns it.
- selectGridFTP(boolean) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Returns a gridftp server from the list of gridftp servers associated with
the site.
- selectGridFtp(ArrayList) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Return a random gridftp url from the list of gridftp url's.
- selectGridGateway(GridGateway.JOB_TYPE) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Selects a grid gateway object corresponding to a job type.
- selectJobManager(String, boolean) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Returns a selected jobmanager corresponding to a particular VDS
universe.
- selectLocalFileServer() - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
Selects a FileServer
associated with the Local Directory.
- selectLRC(boolean) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Returns an LRC from the list of LRCs associated with the site.
- selectLRC(ArrayList) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Return a random lrc url from the list of lrc url's.
- SELECTOR - Static variable in class edu.isi.pegasus.planner.classes.Profile
-
- Selector - Class in edu.isi.pegasus.planner.namespace
-
The selector namespace object.
- Selector() - Constructor for class edu.isi.pegasus.planner.namespace.Selector
-
The default constructor.
- Selector(Map) - Constructor for class edu.isi.pegasus.planner.namespace.Selector
-
The overloaded constructor.
- selectRandomSite(List) - Method in class edu.isi.pegasus.planner.selector.site.Random
-
The random selection that selects randomly one of the records returned by
the transformation catalog.
- selectReplica(ReplicaLocation, String, boolean) - Method in class edu.isi.pegasus.planner.selector.replica.Default
-
This chooses a location amongst all the locations returned by the replica
location service.
- selectReplica(ReplicaLocation, String, boolean) - Method in class edu.isi.pegasus.planner.selector.replica.Local
-
Selects a random replica from all the replica's that have their
site handle set to local and the pfn's start with a file url scheme.
- selectReplica(ReplicaLocation, String, boolean) - Method in class edu.isi.pegasus.planner.selector.replica.Regex
-
This chooses a location amongst all the locations returned by the replica
location service.
- selectReplica(ReplicaLocation, String, boolean) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted
-
This chooses a location amongst all the locations returned by the replica
location service.
- selectReplica(ReplicaLocation, String, boolean) - Method in interface edu.isi.pegasus.planner.selector.ReplicaSelector
-
Selects a single replica amongst all the replicas returned by the implementing
Replica Mechanism.
- selectReplicaCatalog() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Selects a Random ReplicaCatalog.
- selectReplicas(ReplicaLocation, String, boolean) - Method in class edu.isi.pegasus.planner.selector.replica.Default
-
This chooses a location amongst all the locations returned by the
Replica Mechanism.
- selectReplicas(ReplicaLocation, String, boolean) - Method in class edu.isi.pegasus.planner.selector.replica.Local
-
This chooses a location amongst all the locations returned by the
Replica Mechanism.
- selectReplicas(ReplicaLocation, String, boolean) - Method in interface edu.isi.pegasus.planner.selector.ReplicaSelector
-
Selects a replica amongst all the replicas returned by the implementing
Replica Mechanism.
- selectScratchLocalFileServer() - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Selects a FileServer
associated with the Local Directory on
the Scratch system.
- selectScratchLocalFileServer() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Selects a FileServer
associated with the Local Directory on
the Scratch system.
- selectScratchSharedFileServer() - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Selects a FileServer
associated with the Shared Directory on
the Scratch system.
- selectScratchSharedFileServer() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Selects a FileServer
associated with the Shared Directory on
the Scratch system.
- selectSharedFileServer() - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
Selects a FileServer
associated with the Shared Directory.
- selectStorageFileServerForStageout() - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
A convenience method that returns a file server to be used for stageout.
- selectStorageFileServerForStageout() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
A convenience method that selects a file server for staging the data out to
a site.
- selectStorageLocalFileServer() - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Selects a FileServer
associated with the Local Directory on
the Storage system.
- selectStorageLocalFileServer() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Selects a FileServer
associated with the Local Directory on
the Storage system.
- selectStorageSharedFileServer() - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Selects a FileServer
associated with the Shared Directory on
the Storage system.
- selectStorageSharedFileServer() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Selects a FileServer
associated with the Shared Directory on
the Storage system.
- selectTCEntry(List, Job, String) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Calls out to the transformation selector to select an entry from a list
of valid transformation catalog entries.
- selectWorkdir(WorkDir) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Returns the path to the execution mount point (The Workdir).
- Separator - Class in edu.isi.pegasus.common.util
-
This class solely defines the separators used in the textual in-
and output between namespace, name and version(s).
- Separator() - Constructor for class edu.isi.pegasus.common.util.Separator
-
- Separator2Test - Class in edu.isi.pegasus.common.util
-
This is the test program for the Separator class.
- Separator2Test() - Constructor for class edu.isi.pegasus.common.util.Separator2Test
-
- SeparatorTest - Class in edu.isi.pegasus.common.util
-
This is the test program for the Separator class.
- SeparatorTest() - Constructor for class edu.isi.pegasus.common.util.SeparatorTest
-
- SEQ_EXEC_CLASS - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactory
-
The name of the class in this package, that corresponds to seqexec.
- SeqExec - Class in edu.isi.pegasus.planner.cluster.aggregator
-
This class aggregates the smaller jobs in a manner such that
they are launched at remote end, sequentially on a single node using
seqexec.
- SeqExec() - Constructor for class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
The default constructor.
- SEQEXEC_INDEX - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The index in constant arrays for SeqExec
- SEQEXEC_PROGRESS_REPORT_SUFFIX - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
The suffix to be applied to seqexec progress report file.
- SERVICE_DESCRIPTION_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
-
- SERVICE_DESCRIPTION_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
-
- SERVICE_ID_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
-
- SERVICE_ID_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
-
- SERVICE_LIST_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
-
- SERVICE_NAME_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
-
- SERVICE_NAME_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
-
- SERVICE_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
-
- SERVICE_URI_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
-
- SERVICE_URI_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
-
- serviceDescription - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
-
- serviceID - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
-
- serviceList - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
-
- serviceName - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
-
- serviceURI - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
-
- set(String, boolean) - Method in class edu.isi.pegasus.planner.client.DAXValidator
-
Sets a feature while capturing failed features right here.
- set(String, boolean) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Sets a feature while capturing failed features right here.
- set(int) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
Sets a type of transfer to be third party.
- set(int) - Method in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
Sets a type of transfer to be third party.
- SET_XBIT_PREFIX - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The prefix for the jobs which are added to set X bit for the staged
executables.
- setAbortOnFirstJobFailure(boolean) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Setter method to indicate , failure on first consitutent job should
result in the abort of the whole aggregated job.
- setAbortOnFirstJobFailure(boolean) - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Setter method to indicate , failure on first consitutent job should
result in the abort of the whole aggregated job.
- setAbortOnFirstJobFailure(boolean) - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator
-
Setter method to indicate , failure on first consitutent job should
result in the abort of the whole aggregated job.
- setAbstractChildID(String) - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Sets the abstract child id associated with the edge.
- setAbstractParentID(String) - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Sets the abstract parent id associated with the edge.
- setAccessTime(Date) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setApp_loc(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setApp_loc(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setApp_space(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setApp_space(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setArch(Arch) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Sets the architecture of the system.
- setArchitecture(SysInfo.Architecture) - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Sets the architecture of the site.
- setArchitecture(SysInfo.Architecture) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the architecture of the nodes that this grid gateway talks to.
- setArchitecture(SysInfo.Architecture) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the architecture of the site.
- setArchitecture(Executable.ARCH) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Set the architecture the executable is compiled for
- setArchitecture(Architecture) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setArchMode(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor.
- setArguments(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the argument string with which the job has to be invoked.
- setArguments(Arguments) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor.
- setAssociatedJob(String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
Sets the associated job for which the reading was taken.
- setAttribute(String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Adds a new or overwrites an existing attribute.
- setAttribute(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Replaces all existing attributes with new attributes.
- setAuthentication(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the authenticate flag to the value passed.
- setBag(Bag) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Sets the bag of objects associated with the node.
- setBasenamePrefix(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the basename prefix for the per workflow files.
- setBaseSubmitDirectory(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets the submit directory for the workflow.
- setBaseSubmitDirectory(String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the path to the base submit directory.
- setBaseSubmitDirectory(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the path to the base submitdirectory where the submit files are to be
generated.
- setBlocks(long) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setBlockSize(long) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setCacheFiles(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the caches files.
- setCacheFiles(Set) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the caches files.
- setCallback(Callback) - Method in class edu.isi.pegasus.planner.parser.PDAXParser
-
Sets the callback handler for this parsing instance.
- setCallback(Callback) - Method in class edu.isi.pegasus.planner.visualize.KickstartParser
-
Sets the callback to which to callout to while parsing a kickstart
record.
- setChild(String) - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Sets the child of the edge.
- setChildren(List) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
It sets the children to the node.
- setClassName(String) - Method in class edu.isi.pegasus.common.util.DynamicLoader
-
Sets the fully-qualified class name to load.
- setCleanup(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the cleanup option for the planner.
- setCleanupFlag(boolean) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
Sets boolean indicating that space denoted is the amount cleaned.
- setClusteringTechnique(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the clustering option.
- setColor(int) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Sets the color of the node to the color specified
- setContact(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the contact string for the Grid gateway
- setContent(GraphNodeContent) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Sets the content associated with the node.
- setCoreFlag(boolean) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Accessor.
- setCost(long) - Method in class edu.isi.pegasus.planner.provisioner.Edge
-
- setCount(int) - Method in class edu.isi.pegasus.planner.invocation.Fifo
-
Accessor.
- setCreationTime(Date) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setDAGFile(String) - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Sets the DAG file
- setDAGLFN(String) - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Sets the DAG file LFN
- setData(String) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor.
- setData(Data) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Conversion accessor.
- setData_loc(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setData_loc(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setData_space(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setData_space(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setDateFormat(SimpleDateFormat) - Method in class edu.isi.pegasus.common.util.Currently
-
Accessor: Sets the default timestamp format for all queues.
- setDateFormat(String) - Method in class edu.isi.pegasus.common.util.Currently
-
Accessor: Sets the default timestamp format for all queues.
- setDAX(String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the path to the DAX.
- setDAX(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the DAX that has to be worked on by the planner.
- setDAXCallback(Callback) - Method in interface edu.isi.pegasus.planner.parser.dax.DAXParser
-
Set the DAXCallback for the parser to call out to.
- setDAXCallback(Callback) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Set the DAXCallback for the parser to call out to.
- setDAXCallback(Callback) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Set the DAXCallback for the parser to call out to.
- setDAXFile(String) - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Sets the DAX file
- setDAXLFN(String) - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Sets the DAX file LFN
- setDAXMTime(File) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Sets the mtime (last modified time) for the DAX.
- setDAXMTime(String) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Sets the mtime (last modified time) for the DAX.
- setDAXVersion(String) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Sets the dax version
- setDepth(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.AbstractSiteCatalogResource
-
Set the depth
- setDepth(int) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Sets the depth associated with the node.
- setDepth_ResMap(List) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
A BFS implementation to set depth value (roots have depth 1) and also
to populate mResMap ,mResMapLeaves,mResMapRoots which contains all the
jobs that are assigned to a particular resource
- setDerivation(String, String, String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the various attributes of underlying derivation.
- setDerivation(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setDescriptor(int) - Method in class edu.isi.pegasus.planner.invocation.Descriptor
-
Accessor.
- setDescriptor(int) - Method in interface edu.isi.pegasus.planner.invocation.HasDescriptor
-
Accessor: Sets the descriptor number of a file object.
- setDescriptor(int) - Method in class edu.isi.pegasus.planner.invocation.Temporary
-
Accessor.
- setDirectory(String) - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Sets the directory in which the dag needs to execute.
- setDirectory(String) - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Sets the directory in which the dag needs to execute.
- setDirectory(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Setter method to set the name of the job.
- setDirectory(String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Sets the directory where the stdin files are to be generated.
- setDirectory(String) - Method in class edu.isi.pegasus.planner.refiner.NodeCollapser
-
Sets the directory where the stdin files are to be generated.
- setDocumentLocator(Locator) - Method in class edu.isi.pegasus.planner.client.DAXValidator
-
- setDocumentLocator(Locator) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Obtains the document locator from the parser.
- setDocumentLocator(Locator) - Method in class edu.isi.pegasus.planner.parser.Parser
-
Overrides the empty implementation provided by Default Handler and sets
the locator variable for the locator.
- setDomainName(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor.
- setDuration(double) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setDuration(double) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor.
- setDVName(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the derivation name of the underlying derivation.
- setDVNamespace(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the derivation namespace to be associated with the job.
- setDVVersion(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the version of the underlying derivation.
- setElementRelation(String, Object, Object) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
This method sets the relations between the currently finished XML
element(child) and its containing element in terms of Java objects.
- setElementRelation(char, Invocation, Invocation) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
This method sets the relations between the currently finished XML
element and its containing element in terms of Java objects.
- setElementRelation(String, Object, Object) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogParser
-
This method sets the relations between the currently finished XML
element and its containing element in terms of Java objects.
- setElementRelation(String, Object, Object) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
This method sets the relations between the currently finished XML
element(child) and its containing element in terms of Java objects.
- setEndTime(Date) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Set the end time for the planning operation.
- setEnvironment(Environment) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setError(int) - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Accessor.
- setError(int) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor.
- setErrorWriter(String) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Certains levels like FATAL, ERROR and WARN can be set to log to a
different stream, than the default stream used for writing other messages.
- setErrorWriter(OutputStream) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Certains levels like FATAL, ERROR and WARN can be set to log to a
different stream, than the default stream used for writing other messages.
- setEvent(String, String, String) - Method in interface edu.isi.pegasus.common.logging.Event
-
Set the event that is to be associated with the log messages.
- setEvent(String, Map<String, String>) - Method in interface edu.isi.pegasus.common.logging.Event
-
Adds the event that is to be associated with the log messages onto an
internal stack
- setEvent(String, String, String) - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Set the event that is to be associated with the log messages.
- setEvent(String, Map<String, String>) - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Adds the event that is to be associated with the log messages onto an
internal stack
- setEvent(String, String, String) - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Set the event that is to be associated with the log messages.
- setEvent(String, Map<String, String>) - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Adds the event that is to be associated with the log messages onto an
internal stack
- setExec_jm(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setExec_jm(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setExecutable(boolean) - Method in class edu.isi.pegasus.planner.dax.File
-
Mark the file as executable.
- setExecutable() - Method in class edu.isi.pegasus.planner.dax.File
-
Mart the file as executable.
- SetExecutable() - Method in class edu.isi.pegasus.planner.dax.File
-
Deprecated.
- setExecutable(String) - Method in class edu.isi.pegasus.planner.invocation.Arguments
-
Accessor.
- setExecutable(String) - Method in class edu.isi.pegasus.planner.invocation.CommandLine
-
Accessor.
- setExecutable(StatCall) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor.
- setExecutableForTransfer() - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Adds the executable for transfer via the condor file transfer mechanism.
- setExecutableStagingForJob(boolean) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the executable staging flag in the job to the value passed.
- setExecutionSites(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the names of the execution sites where the concrete workflow can
be run.
- setExecutionSites(Collection) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the names of the execution sites where the concrete workflow can
be run.
- setExecutionSites(Collection) - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Sets the execution sites.
- setExitCode(short) - Method in class edu.isi.pegasus.planner.invocation.JobStatusRegular
-
Accessor.
- setFile(File) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor.
- setFilename(String) - Method in interface edu.isi.pegasus.planner.invocation.HasFilename
-
Accessor: Sets the name of an file object.
- setFilename(String) - Method in class edu.isi.pegasus.planner.invocation.Regular
-
Accessor.
- setFilename(String) - Method in class edu.isi.pegasus.planner.invocation.Temporary
-
Accessor.
- setFileOptional() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the optionalflag denoting the file to be optional to true.
- setFileServers(List<FileServer>) - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType
-
Sets the list of FileServers that can access this directory.
- setFlowTimestamp(String) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Sets the flow timestamp for the workflow.
- setForce(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the force option for the planner.
- setForceReplan(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the force replan option
- setForPlannerUse(PegasusProperties, PlannerOptions) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
A setter method that is to be set to use getWorkDirectory functions, correctly.
- setFreeSize(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
Sets the free directory size
- setFrom(Node) - Method in class edu.isi.pegasus.planner.provisioner.Edge
-
set the 'from' task
- setGatekeeper(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setGatekeeper(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- setGatekeeper(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setGID(int) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setGID(int) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setGk_port(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setGk_port(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setGlibc(String) - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Sets the glibc version on the site.
- setGlibc(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the glibc version on the site.
- setGlibc(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the glibc version on the site.
- setGlibc(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Sets the glibc version of the system
- setGlibc(String) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Set the glibc this executable is compiled for
- setGlobus_loc(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setGlobus_loc(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setGrid(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- setGrid_services(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setGrid_services(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setGridFTPBandwidthInfo(GridFTPBandwidth) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
It fills information in the mBandWidths ArrayList.
- setGroup(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setGroup(String) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setGsiftp_port(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setGsiftp_port(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setGsiftp_server(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setHandle(String) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor.
- setHeadNodeFS(HeadNodeFS) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the headnode filesystem.
- setHelp(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the help option for the planner.
- setHostAddress(InetAddress) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setHostname(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setID(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- setID(String) - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
It sets the id of the partition.
- setIdleNodes(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the number of idle nodes that this grid gateway talks to.
- setIdleNodes(int) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the number of idle nodes that this grid gateway talks to.
- setIndex(int) - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
It sets the index associated with this partition to the value passed.
- setInfo(int, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
This method sets the info about gridftpbw based on the gridftpbwkey
- setInfo(int, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
Sets an attribute associated with the grid ftp server.
- setInfo(int, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
Sets an attribute associated with the jobmanager.
- setInfo(int, Object) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Sets an attribute associated with the remote site.
- setInfo(int, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
Sets an attribute associated with the work directory.
- setInheritedRCFiles(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the inherited RC Files.
- setInheritedRCFiles(Set) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the inherited RC Files.
- setINode(long) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setInputBlocks(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- setInputFiles(Set) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the input files associated with the job.
- setInputSize(long) - Method in class edu.isi.pegasus.planner.invocation.Fifo
-
Accessor.
- setInstalled() - Method in class edu.isi.pegasus.planner.dax.Executable
-
set the installed flag on the executable.
- setInstalled(boolean) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Set the installed flag on the executable.
- setInterface(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setInternalMountPoint(InternalMountPoint) - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType
-
Sets the internal mount point for the directory.
- setInvoluntarySwitches(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Sets the number of involuntary context switches.
- setJob(int, Job) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Overwrites a job at a certain position.
- setJob(Collection) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Overwrites internal list with an external list
representing jobs.
- setJobAggregator(JobAggregator) - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Sets the JobAggregator that created this aggregated job.
- setJobManager(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the remote jobmanager on which the job has to run.
- setJobName(String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
It sets the name of the job that is associated with the profiles contained
in this placeholder.
- setJobName(String) - Method in interface edu.isi.pegasus.planner.visualize.Measurement
-
Sets the job for which the measurement was taken.
- setJobName(String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement
-
Sets the job for which the measurement was taken.
- setJobnamePrefix(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the job prefix to be used while constructing the job names.
- setJobStatus(JobStatus) - Method in class edu.isi.pegasus.planner.invocation.Status
-
Accessor.
- setJobType(GridGateway.JOB_TYPE) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the type of jobs that run via this grid gateway.
- setJobType(int) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the type of the job.
- setKey(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
Returns the connection key.
- setKey(String) - Method in class edu.isi.pegasus.planner.classes.NameValue
-
Sets the key associated with this tuple.
- setKey(String) - Method in class edu.isi.pegasus.planner.invocation.EnvEntry
-
Accessor.
- setLabel(String) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Sets the label for the workflow.
- setLabel(String) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Sets the DAXlabel.
- setLabel(String) - Method in class edu.isi.pegasus.planner.dax.Parent
-
- setLabelKey(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph
-
Set the profile key that is to be used to pick up the labels.
- setLabelKey(String) - Static method in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
-
Sets the label key that is to be associated with the bag.
- setLast_Test_Date(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- setLdapConnectionEnv(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
Enables a user to set new or overide existing connection settings to the MDS.
- setLdapSearchConstraints() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- setLevel(Level) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Sets the debug level.
- setLevel(int) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Sets the debug level.
- setLevel(int, boolean) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Sets the debug level.
- setLevel(Level) - Method in class edu.isi.pegasus.common.logging.logger.Log4j
-
Sets the debug level.
- setLevel(int) - Method in class edu.isi.pegasus.common.logging.logger.Log4j
-
Sets the debug level.
- setLevel(int, boolean) - Method in class edu.isi.pegasus.common.logging.logger.Log4j
-
Sets the debug level.
- setLevel(Level, boolean) - Method in class edu.isi.pegasus.common.logging.logger.Log4j
-
Sets the debug level.
- setLevel(Level) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Sets the debug level.
- setLevel(int) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Sets the debug level.
- setLevel(int, boolean) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Sets the debug level.
- setLevel(int) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the level for the job.
- setLevel(int) - Method in class edu.isi.pegasus.planner.client.RCClient
-
Sets a logging level.
- setLFN(String) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
It sets the logical filename of the file that is being transferred.
- setLFN(String) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Sets the LFN.
- setLFN(String) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor.
- setLink(File.LINK) - Method in class edu.isi.pegasus.planner.dax.File
-
Set the file linkage
- setLinkage(PegasusFile.LINKAGE) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the linkage for the file during parsing.
- setLinkCount(long) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setLocalDirectory(LocalDirectory) - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
Sets the local directory.
- setLoggingLevel(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the logging level for logging of messages.
- setLogicalID(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Setter method to set the logical id of the job.
- setLogicalName(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the logical mName of the transformation.
- setLogicalNamespace(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the logical mNamespace of the transformation.
- setLogicalTransformation(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the logical transformation with a fully qualified tranformation String of the format NS::NAME:Ver
- setLogicalTransformation(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the logical transformation by providing the mNamespace, mName and mVersion as seperate strings.
- setLogicalVersion(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the logical mVersion of the transformation.
- setMachine(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor.
- setMachine(Machine) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setMachineSpecific(MachineSpecific) - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Sets the machine-specific grouping element.
- setMajor(int) - Method in class VersionTask
-
Accessor to set the major version number.
- setMajorFaults(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Sets the number of major page faults.
- setMaximumRSS(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- setMeasurement(Measurement, int) - Method in class edu.isi.pegasus.planner.visualize.JobMeasurements
-
Adds a measurement for a particular event type.
- setMegaDAGMode(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the megadag generation option
- setMinor(int) - Method in class VersionTask
-
Accessor to set the minor version number.
- setMinorFaults(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Sets the number of minor faults.
- setMode(int) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setModificationTime(Date) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setMonitoring(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the flag to denote whether we want to monitor the workflow or not.
- setMountPoint(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Returns the mount point.
- setMountPoint(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
Sets the mount point for the file system type.
- setName(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- setName(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Setter method to set the name of the job.
- setName(String) - Method in class edu.isi.pegasus.planner.dax.Parent
-
- setName(String) - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
It sets the partition name to the value passed.
- setName(String) - Method in class edu.isi.pegasus.planner.ranking.Ranking
-
Sets the name.
- setNextException(CatalogException) - Method in exception edu.isi.pegasus.planner.catalog.CatalogException
-
Adds an CatalogException object to the end of
the chain.
- setNodeLabel(String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setNodeName(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor.
- setNonThirdPartySite(String) - Method in class edu.isi.pegasus.planner.classes.TransferJob
-
Sets the non third party site for the transfer job.
- setNumberOfRescueTries(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the number of times to try for rescue dag submission.
- setNumberOfRescueTries(int) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the number of times to try for rescue dag submission.
- setOptional(boolean) - Method in class edu.isi.pegasus.planner.dax.File
-
Set the optional flag on the file.
- setOptionalArg(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the flag to denote that the optional argument for the random was
specified.
- setOriginalArgString(String[]) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the argument string of how planner was invoked.
- setOS(SysInfo.OS) - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Sets the OS of the site.
- setOS(SysInfo.OS) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the OS of the nodes that this grid gateway talks to.
- setOS(SysInfo.OS) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the OS of the site.
- setOs(Os) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Sets the Os of the sytem.
- setOS(Executable.OS) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Set the OS the executable is compiled for
- setOsg_grid(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setOsg_grid(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setOSRelease(String) - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Sets the OS release of the site.
- setOSRelease(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the OS release of the site.
- setOSRelease(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the OS release of the site.
- setOSRelease(String) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Set the osrelease the executable is compiled for
- setOSVersion(String) - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Sets the OS version of the site.
- setOSVersion(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the OS version of the site.
- setOSVersion(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the OS version of the site.
- setOsversion(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Sets the Os version of the system.
- setOSVersion(String) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Set the osversion the executable is compiled for
- setOutputBlocks(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- setOutputFiles(Set) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the output files associated with the job.
- setOutputSite(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the output site specified by the user.
- setOutputSize(long) - Method in class edu.isi.pegasus.planner.invocation.Fifo
-
Accessor.
- setOutputWriter(String) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Sets the writer associated with the class to the one specified for all
type of messages other than error messages.
- setOutputWriter(OutputStream) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Sets the writer associated with the class to the one specified for all
type of messages other than error messages.
- setPageSize(long) - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Sets the page size.
- setParent(String) - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Sets the parent of the edge.
- setParents(List) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
It adds the parents to the node.
- setParserFeature(String, boolean) - Method in class edu.isi.pegasus.planner.parser.Parser
-
Sets a parser feature, and fails here enabling us to set all the following
features.
- setPartitioningType(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the partitioning type in case of partition and plan.
- setPartitionName(String) - Method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
It sets the name of the partition in the dax that is generated.
- setPartOfDeferredRun(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the flag to denote that the run is part of a larger deferred run.
- setPatch(int) - Method in class VersionTask
-
Accessor to set the patch-level number.
- setPDAX(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the PDAX that has to be worked on by the planner.
- setPFN(String) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Accessor: Sets a new PFN to remember.
- setPhysicalMemory(long) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setPhysicalTransformation(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the physical location of the transformation.
- setPID(int) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setPID(int) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor.
- setPosition(int) - Method in class edu.isi.pegasus.planner.invocation.ArgEntry
-
Accessor.
- setPostSCRIPTDebugON() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether to turn debug on or not for exitcode.
- setPreScript(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
It sets the prescript for the job.
- setPreScript(String, String) - Method in class edu.isi.pegasus.planner.classes.Job
-
It sets the prescript for the job.
- setPrescript(Job, String, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Sets the prescript that ends up calling to the default wrapper that
introduces retry into Pegasus for a particular job.
- setPrescript(Job, String, String, String, String, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Sets the prescript that ends up calling to the default wrapper that
introduces retry into Pegasus for a particular job.
- setProfile(String, String, String) - Method in class edu.isi.pegasus.planner.classes.Profile
-
This method allows to set the namespace , key and value of the Profile.
- setProfileKey(String) - Method in class edu.isi.pegasus.planner.classes.Profile
-
Sets the profile key
- setProfileNamespace(String) - Method in class edu.isi.pegasus.planner.classes.Profile
-
Sets the NameSpace of the Profile
- setProfiles(Profiles) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Sets the profiles associated with the file server.
- setProfiles(Profiles) - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Sets the profiles associated with the file server.
- setProfiles(Profiles) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the profiles associated with the file server.
- setProfiles(Profiles) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Sets the profiles associated with the file server.
- setProfileValue(String) - Method in class edu.isi.pegasus.planner.classes.Profile
-
Sets the profile value
- setProgramName(String) - Method in interface edu.isi.pegasus.common.logging.Event
-
Sets the program name for the software whose log statement are logged.
- setProgramName(String) - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Sets the program name for the software whose log statement are logged.
- setProgramName(String) - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Sets the program name for the software whose log statement are logged.
- setProgramName(String) - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Sets the program name for the software whose log statement are logged.
- setProgramName(String) - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Sets the program name for the software whose log statement are logged.
- setProperties(String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the path to the properties file for the run.
- setProperty(String, String) - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Accessor: Overwrite any properties from within the program.
- setProperty(String, Object) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.AbstractSiteCatalogResource
-
Sets the property of Site Catalog resource
- setProperty(String, Object) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
-
Sets the property of Site Catalog resource
- setProperty(String, Object) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfo
-
Sets the property of Site Catalog resource
- setProperty(String, Object) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
-
Sets the property of Site Catalog resource
- setProperty(String, Object) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
-
Sets the property of Site Catalog resource
- setProperty(String, Object) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteVOOwnershipInfo
-
Sets the property of Site Catalog resource
- setProperty(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets a property passed on the command line.
- setProperty(String, String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Accessor: Overwrite any properties from within the program.
- setProtocol(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Set the protocol implemented by the file server.
- setRandomDir(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the random directory in which the jobs are run.
- setRank(long) - Method in class edu.isi.pegasus.planner.ranking.Ranking
-
Sets the rank.
- setReceived(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- setRefiner(Refiner) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Sets the callback to the refiner, that has loaded this implementation.
- setRefiner(Refiner) - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Sets the callback to the refiner, that has loaded this implementation.
- setRegister(boolean) - Method in class edu.isi.pegasus.planner.dax.File
-
Set the register flag of the file.
- setRegisterFlag(boolean) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the transient registration flag to value specified.
- setRegName(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Sets the name of the registration job.
- setRelativeDirectory(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the path to the relative directory where the submit files are to be
generated.
- setRelativeSubmitDirectory(String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the path to the submit directory relative to the base.
- setRelativeSubmitDirectory(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the path to the directory where the submit files are to be
generated.
- setRelease(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor.
- setReleaseVersion() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Grabs the release version from VDS.Properties file.
- setRemoteExecutable(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the path to the executable on the remote grid site.
- setRenderedToExecutableForm(boolean) - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns a boolean indicating whether a job has been rendered to an executable
form or not
- setReplicaStore(ReplicaStore) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets the Replica Store
- setRequestID(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets the request id.
- setResource(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setResourceHandle(String) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Sets a new resource handle to remember as PFN attribute.
- setResourceId(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the mResourceID where the transformation is available.
- setRootWorkflowUUID(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets the root UUID for the workflow
- setRuntime(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the expected runtime for the job.
- setRuntime(double) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the expected runtime for the job.
- setRuntime(long) - Method in class edu.isi.pegasus.planner.ranking.Ranking
-
Sets the runtime.
- setSanitizePath(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the flag denoting whether to sanitize path or not.
- setScheduler(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the the underlying scheduler that gateway talks to.
- setScheduler(GridGateway.SCHEDULER_TYPE) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the the underlying scheduler that gateway talks to.
- setSchemaLocations(String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Sets the list of external real locations where the XML schema may
be found.
- setSchemaLocations(String) - Method in class edu.isi.pegasus.planner.parser.Parser
-
Sets the list of external real locations where the XML schema may be found.
- setScratch(HeadNodeScratch) - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Sets the scratch area on the head node.
- setScratch(WorkerNodeScratch) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Sets the scratch area on the head node.
- setSent(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- setSharedDirectory(SharedDirectory) - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
Sets the shared directory.
- setSharedRSS(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- setShortname(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setShortname(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setSignalNumber(short) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Accessor.
- setSignalNumber(short) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Accessor.
- setSignals(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Sets the number of signalss sent.
- setSite(String) - Method in class edu.isi.pegasus.planner.dax.PFN
-
- setSiteHandle(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the site handle for the site
- setSiteHandle(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the site handle of the site, where teh job is to be executed
- setSiteMap(String, Map) - Method in class edu.isi.pegasus.planner.classes.TCMap
-
This method allows to associate a site map with a particular logical transformation
- setSiteTCEntries(String, String, TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.classes.TCMap
-
This method allows to add a TransformationCatalogEntry object in the map
to a particular transformation for a particular site
- setSize(double) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the size for the file.
- setSize(String) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the size for the file.
- setSize(long) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setSize(float, char) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
Sets the size.
- setSize(String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
Sets the size.
- setSponsor_vo(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setSponsor_vo(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setStackRSS(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- setStagingSiteHandle(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the staging site.
- setStamp(Stamp) - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Sets the time stamp when the machine info was obtained.
- setStart(Date) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setStart(Date) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor.
- setStartTime(Date) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Set the start time for the planning operation.
- setStatCall(int, StatCall) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Overwrites a stat at a certain position.
- setStatCall(Collection) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Overwrites internal list with an external list
representing stats.
- setStatInfo(StatInfo) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor.
- setStatus(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- setStatus(Status) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor.
- setStatus(int) - Method in class edu.isi.pegasus.planner.invocation.Status
-
Accessor.
- setStdErr(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the file to which the stderr of the job needs to be written to
at the remote grid site.
- setStderr(File) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStderr(File, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStderr(File, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStderr(File, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStderr(File, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStderr(String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStderr(String, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStderr(String, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStderr(String, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStderr(String, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdIn(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the file to from which to pick up the stdin for the job.
- setStdin(File) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdin(File, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdin(File, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdin(File, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdin(File, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdin(String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdin(String, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdin(String, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdin(String, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdin(String, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdOut(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the file to which the stdout of the job needs to be written to
at the remote grid site.
- setStdout(File) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdout(File, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdout(File, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdout(File, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdout(File, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdout(String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdout(String, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdout(String, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdout(String, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStdout(String, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- setStorage(HeadNodeStorage) - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Sets the storage area on the head node.
- setStorage(WorkerNodeStorage) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Sets the storage area on the head node.
- setSubmitDirectory(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the path to the directory where the submit files are to be
generated.
- setSubmitDirectory(File) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the path to the directory where the submit files are to be
generated.
- setSubmitDirectory(String, String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the path to the directory where the submit files are to be
generated.
- setSubmitToScheduler(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns whether to submit the workflow or not.
- setSwaps(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Sets the number of swap ops.
- setSysInfo(SysInfo) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the System Information associated with the Site.
- setSysInfo(SysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Sets the system information for the entry.
- setSystemName(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor.
- setSystemTime(double) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Sets the system time.
- setTag(String) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor.
- setTag(String) - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
Accessor.
- setTerminate(boolean) - Static method in class edu.isi.pegasus.planner.invocation.SimpleServer
-
- setTime(Date, int) - Method in class edu.isi.pegasus.planner.visualize.JobMeasurements
-
Adds a time for a particular event type.
- setTime(Date) - Method in interface edu.isi.pegasus.planner.visualize.Measurement
-
Sets the time at which the measurement was taken.
- setTime(Date) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement
-
Sets the time at which the measurement was taken.
- setTimeStampMillis(long) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Set the timestamp from milliseconds
returned by System.currentTimeMillis().
- setTimeStampNanos(long) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Set the timestamp from nanoseconds
returned by System.nanoTime().
- setTmp_loc(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setTmp_loc(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setTmp_space(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setTmp_space(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setTo(Node) - Method in class edu.isi.pegasus.planner.provisioner.Edge
-
set the 'to' task
- setToString(Set, String) - Method in class edu.isi.pegasus.planner.classes.Data
-
A small helper method that displays the contents of a Set in a String.
- setToString(Set, String) - Method in class edu.isi.pegasus.planner.refiner.MainEngine
-
A small helper method that displays the contents of a Set in a String.
- setTotalNodes(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the number of total nodes that this grid gateway talks to.
- setTotalNodes(int) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the total number of nodes that this grid gateway talks to.
- setTotalSize(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
Sets the directory size
- setTransfer(File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.File
-
Set the transfer type of the file
- setTransferFlag(int) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the transient transfer flag to value passed.
- setTransferFlag(String) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the transient transfer flag corresponding to the string
value of transfer mode passed.
- setTransferFlag(String, boolean) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the transient transfer flag corresponding to the string
value of transfer mode passed.
- setTransferType(int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Sets the transfer type for the transfers associated.
- setTransformation(String, String, String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the various attributes of underlying transformation.
- setTransformation(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setTransformationStore(TransformationStore) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets the Transformation Store
- setTransientRegFlag() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Deprecated.
- setTruncated(boolean) - Method in class edu.isi.pegasus.planner.invocation.Data
-
Accessor.
- setTXName(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the transformation name of the underlying transformation.
- setTXName(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Sets the name of the transfer job.
- setTXNamespace(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the transformation namespace to be associated with the job.
- setTXVersion(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the version of the underlying transformation.
- setType(GridGateway.TYPE) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the type of grid gateway.
- setType(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Sets the type of replica catalog.
- setType(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- setType(TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the type of the transformation.
- setType(int) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the type flag to value passed.
- setType(String) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the transient transfer flag to value passed.
- setTypeRecursive() - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the job to be recursive.
- setUID(int) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setUID(int) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setUMask(int) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setUname(Uname) - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Sets the utsname generic system information record.
- setUniverse(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Set the universe associated with the job.
- setUnsharedRSS(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- setupJob(Job, List, List) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Small helper method to set up the attributes for the job elements.
- setupLogging(LogManager, PegasusProperties) - Method in class edu.isi.pegasus.planner.client.Executable
-
Sets up the logging options for this class.
- setupLogging() - Method in class edu.isi.pegasus.planner.client.NetloggerExitcode
-
Sets up the logging options for this class.
- setupLogging() - Method in class edu.isi.pegasus.planner.client.PegasusGetSites
-
Sets up the logging options for this class.
- setupLogging() - Method in class edu.isi.pegasus.planner.client.SCClient
-
Sets up the logging options for this class.
- setupLogging() - Method in class edu.isi.pegasus.planner.client.TCClient
-
Sets up the logging options for this class.
- setupLogging() - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Sets up the logging options for this class.
- setURL(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Sets the url for the replica catalog.
- setURL(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC
-
Sets the url of the LRC associated with the object.
- setURLPrefix(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Sets the url prefix .
- setUsage(Usage) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setUsage(Usage) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor.
- setUser() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the username.
- setUser(String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the user.
- setUser(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setUser(String) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setUserTime(double) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Sets the user time.
- setUtil_jm(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setUtil_jm(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setValue(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
Returns the key value.
- setValue(String) - Method in class edu.isi.pegasus.planner.classes.NameValue
-
Sets the value associated with this tuple.
- setValue(String) - Method in class edu.isi.pegasus.planner.dax.MetaData
-
Set the value of the metadata
- setValue(String) - Method in class edu.isi.pegasus.planner.dax.Profile
-
Set the value of this Profile
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.ArgEntry
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.ArgString
-
Accessor.
- setValue(int, String) - Method in class edu.isi.pegasus.planner.invocation.ArgVector
-
Sets the argument vector at the specified location.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.Boot
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.CommandLine
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.CPU
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.Data
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.EnvEntry
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.File
-
Accessor.
- setValue(String) - Method in interface edu.isi.pegasus.planner.invocation.HasText
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.Ignore
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.Stamp
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.Uname
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.WorkingDir
-
Accessor.
- setValue(int) - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
-
The set method to set the value.
- setValue(Object) - Method in interface edu.isi.pegasus.planner.visualize.Measurement
-
Sets the value of the measurement.
- setValue(Object) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement
-
Sets the value of the measurement.
- setVDSProperties(List) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the VDS properties specifed by the user at the command line.
- setVDSSuperNode(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Setter method to the name of the compute job of Pegasus supernode containing
this job.
- setVDSSysInfo(VDSSysInfo) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the sysinfo for the site.
- setVDSSysInfo(VDSSysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the System Information associated with the transformation.
- setVdt_version(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setVdt_version(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setVersion(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setVersion(String) - Method in class VersionTask
-
Accessor to set the version string.
- setVOGroup(String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the vo group
- setVOGroup(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Set the VO Group to which the user belongs
- setVoInfo(VORSVOInfo) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setVoluntarySwitches(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Sets the number of voluntary context switches.
- setWeight(long) - Method in class edu.isi.pegasus.planner.provisioner.Node
-
set execution time of this task
- setWhat(String) - Method in class edu.isi.pegasus.planner.dax.Invoke
-
Set what executable to invoke and how
- setWhen(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.dax.Invoke
-
Set when to invoke
- setWntmp_loc(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- setWntmp_loc(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- setWorkerNodeFS(WorkerNodeFS) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the worker node filesystem.
- setWorkerSharedDirectory(WorkerSharedDirectory) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
-
Sets the directory shared amongst the worker nodes only.
- setWorkerSharedDirectory(WorkerSharedDirectory) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage
-
Sets the directory shared amongst the worker nodes only.
- setWorkflowLabel(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setWorkflowMetrics(WorkflowMetrics) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the workflow metrics.
- setWorkflowRefinementStarted(boolean) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets whether the workflow refinement has started or not
- setWorkflowTimestamp(Date) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setWorkflowUUID(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets the UUID for the workflow
- setWorkingDirectory(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setWorkingDirectory(WorkingDir) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setWriters(String) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Sets both the output writer and the error writer to the same
underlying writer.
- setWriters(String) - Method in class edu.isi.pegasus.common.logging.logger.Log4j
-
Sets both the output writer and the error writer to the same
underlying writer.
- setWriters(String) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Sets both the output writer and the error writer to the same
underlying writer.
- setXBitOnFile(String) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Sets the xbit on the file.
- setXBitOnFile(String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Sets the xbit on the file.
- setXBitWithKickstart() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether kickstart should set x bit on
staged executables before launching them.
- SHARED_FS_CONFIGURATION_VALUE - Static variable in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
The value for the non shared filesystem configuration.
- SharedDirectory - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This data class represents a shared directory on a site.
- SharedDirectory() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SharedDirectory
-
The default constructor.
- SharedDirectory(List<FileServer>, InternalMountPoint) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SharedDirectory
-
The overloaded constructor
- Shell - Class in edu.isi.pegasus.planner.code.generator
-
This code generator generates a shell script in the submit directory.
- Shell() - Constructor for class edu.isi.pegasus.planner.code.generator.Shell
-
The default constructor.
- shiftRight(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Returns a float with the decimal point shifted right till the end.
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.ExitCode
-
The SHORTNAME for this implementation.
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.ExitPOST
-
The SHORTNAME for this implementation.
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The SHORTNAME for this implementation.
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
The SHORTNAME for this implementation.
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
The SHORTNAME for this implementation.
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript
-
The SHORTNAME for this implementation.
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
The SHORTNAME for this implementation.
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The SHORTNAME for this implementation.
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
-
The SHORTNAME for this implementation.
- shortDescribe() - Method in class edu.isi.pegasus.planner.code.gridstart.ExitCode
-
Returns a short textual description of the implementing class.
- shortDescribe() - Method in class edu.isi.pegasus.planner.code.gridstart.ExitPOST
-
Returns a short textual description of the implementing class.
- shortDescribe() - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Returns a short textual description in the form of the name of the class.
- shortDescribe() - Method in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
Returns a short textual description of the implementing class.
- shortDescribe() - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Returns a short textual description in the form of the name of the class.
- shortDescribe() - Method in class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript
-
Returns a short textual description of the implementing class.
- shortDescribe() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
Returns a short textual description of the implementing class.
- shortDescribe() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Returns a short textual description in the form of the name of the class.
- shortDescribe() - Method in interface edu.isi.pegasus.planner.code.GridStart
-
Returns a short textual description of the implementing class.
- shortDescribe() - Method in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
-
Returns a short textual description of the implementing class.
- shortDescribe() - Method in interface edu.isi.pegasus.planner.code.POSTScript
-
Returns a short textual description of the implementing class.
- shortname - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- shortname - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- SHOULD_TRANSFER_FILES_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
-
The name of the key that designates that files should be transferred
via Condor File Transfer mechanism.
- SHOULD_TRANSFER_FILES_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that designates that files should be transferred
via Condor File Transfer mechanism.
- show(String) - Static method in class edu.isi.pegasus.common.util.Separator2Test
-
- show(String) - Static method in class edu.isi.pegasus.common.util.SeparatorTest
-
- show(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.client.RCClient
-
Preliminary implementation of output method.
- showHelp() - Method in class edu.isi.pegasus.planner.client.RCClient
-
Prints internal command help.
- ShowProperties - Class in <Unnamed>
-
Displays single specific values or all values from the current
system properties.
- ShowProperties() - Constructor for class ShowProperties
-
- showThreads() - Method in class edu.isi.pegasus.planner.client.ExitCode
-
- showUsage() - Method in class edu.isi.pegasus.planner.client.ExitCode
-
Implements printing the usage string onto stdout.
- showUsage() - Method in class edu.isi.pegasus.planner.client.RCClient
-
Prints the usage string on stdout.
- showUsage() - Method in class edu.isi.pegasus.planner.client.VersionNumber
-
Prints the usage string.
- showUsage() - Method in class edu.isi.pegasus.planner.invocation.SimpleServer
-
- showVersion(Version, boolean) - Static method in class edu.isi.pegasus.planner.client.VersionNumber
-
Print the version information onto stdout.
- Simple - Class in edu.isi.pegasus.common.logging.format
-
This formatter formats the messages in the simple format.
- Simple() - Constructor for class edu.isi.pegasus.common.logging.format.Simple
-
The default constructor.
- SimpleEvent - Class in edu.isi.pegasus.common.logging.format
-
A Simple LogEvent implementation that is back by a StringBuffer.
- SimpleEvent() - Constructor for class edu.isi.pegasus.common.logging.format.SimpleEvent
-
The default constructor.
- SimpleFile - Class in edu.isi.pegasus.planner.catalog.replica.impl
-
This class implements a replica catalog on top of a simple file which
contains two or more columns.
- SimpleFile() - Constructor for class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Default empty constructor creates an object that is not yet connected
to any database.
- SimpleServer - Class in edu.isi.pegasus.planner.invocation
-
- SimpleServer(int) - Constructor for class edu.isi.pegasus.planner.invocation.SimpleServer
-
- SimpleServerThread - Class in edu.isi.pegasus.planner.invocation
-
- SimpleServerThread(SimpleServer, Socket) - Constructor for class edu.isi.pegasus.planner.invocation.SimpleServerThread
-
- SINGLE_READ - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Constants for single read.
- SINGLE_READ - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TCMode
-
Constants for backward compatibility.
- SingleFTPerXFERJob - Interface in edu.isi.pegasus.planner.transfer
-
An empty interface, that allows for grouping of implementations that can
handle only one file transfer per transfer job like old guc and Stork.
- SingleFTPerXFERJobRefiner - Class in edu.isi.pegasus.planner.transfer
-
The refiner interface, that determines the functions that need to be
implemented to add various types of transfer nodes to the workflow.
- SingleFTPerXFERJobRefiner(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.SingleFTPerXFERJobRefiner
-
The overloaded constructor.
- SingleLook - Class in edu.isi.pegasus.planner.partitioner
-
This class ends up writing a partitioned dax, that corresponds to one
partition as defined by the Partitioner.
- SingleLook(String, String) - Constructor for class edu.isi.pegasus.planner.partitioner.SingleLook
-
The overloaded constructor.
- SingleLook.MyCallBackHandler - Class in edu.isi.pegasus.planner.partitioner
-
The internal callback handler for the DAXParser in Euryale.
- SingleLook.MyCallBackHandler() - Constructor for class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler
-
The empty constructor.
- SINGLETON_LOAD - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Constants to specify how to load the
class, as singleton or non singleton.
- SINGLETON_LOAD - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory
-
Constants to specify how to load the class, as singleton or non singleton.
- singletonInstance(String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
The method which returns a Singleton instance of the derived InfoProvider
class.
- singletonInstance(String, String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.Text
-
The method returns a singleton instance of the derived InfoProvider class.
- singletonInstance(String, String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.XML
-
The method returns a singleton instance of the derived InfoProvider class.
- SITE - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
token value for the reserved word "site".
- SITE - Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
token value for the reserved word "site".
- Site - Class in edu.isi.pegasus.planner.selector.site.heft
-
A data class that models a site as a collection of processors.
- Site(String) - Constructor for class edu.isi.pegasus.planner.selector.site.heft.Site
-
The default constructor.
- Site(String, int) - Constructor for class edu.isi.pegasus.planner.selector.site.heft.Site
-
The overloaded constructor.
- SITE_CATALOG - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The constant to be passed to the accessor functions to get or set the
handle to the site catalog.
- SITE_NAME_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
-
- SITE_NAME_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfo
-
- SITE_NOT_FOUND - Static variable in interface edu.isi.pegasus.planner.selector.SiteSelector
-
The value for the pool handle, when the pool is not found.
- SITE_STORE - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The constant to be passed to the accessor functions to get or set the
handle to the Site Store
- SiteCatalog - Interface in edu.isi.pegasus.planner.catalog
-
- SiteCatalogEntry - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This data class describes a site in the site catalog.
- SiteCatalogEntry() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
The default constructor.
- SiteCatalogEntry(String) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
The overloaded constructor.
- SiteCatalogException - Exception in edu.isi.pegasus.planner.catalog.site
-
Class to notify of failures.
- SiteCatalogException() - Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteCatalogException
-
Constructs a SiteCatalogException
with no detail
message.
- SiteCatalogException(String) - Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteCatalogException
-
Constructs a SiteCatalogException
with the
specified detailed message.
- SiteCatalogException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteCatalogException
-
Constructs a SiteCatalogException
with the
specified detailed message and a cause.
- SiteCatalogException(Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteCatalogException
-
Constructs a SiteCatalogException
with the
specified just a cause.
- SiteCatalogParser - Class in edu.isi.pegasus.planner.parser
-
This class uses the Xerces SAX2 parser to validate and parse an XML
document conforming to the Site Catalog schema v3.0
- SiteCatalogParser(PegasusBag, List<String>) - Constructor for class edu.isi.pegasus.planner.parser.SiteCatalogParser
-
The overloaded constructor.
- SiteCatalogReservedWord - Class in edu.isi.pegasus.planner.parser.tokens
-
Class to capture reserved words.
- SiteCatalogReservedWord(int) - Constructor for class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
Initializes an instance of a reserved word token.
- SiteCatalogTextParser - Class in edu.isi.pegasus.planner.parser
-
Parses the input stream and generates site configuration map as
output.
- SiteCatalogTextParser(Reader) - Constructor for class edu.isi.pegasus.planner.parser.SiteCatalogTextParser
-
Initializes the parser with an input stream to read from.
- SiteCatalogTextScanner - Class in edu.isi.pegasus.planner.parser
-
Implements the scanner for reserved words and other tokens that are
generated from the input stream.
- SiteCatalogTextScanner(Reader) - Constructor for class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner
-
Starts to scan the given stream.
- SiteData - Class in edu.isi.pegasus.planner.catalog.site.classes
-
The abstract base class for all site catalog classes.
- SiteData() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SiteData
-
- SiteFactory - Class in edu.isi.pegasus.planner.catalog.site.impl.old
-
A factory class to load the appropriate implementation of Transformation
Catalog as specified by properties.
- SiteFactory() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory
-
- SiteFactory - Class in edu.isi.pegasus.planner.catalog.site
-
A factory class to load the appropriate implementation of Site Catalog
as specified by properties.
- SiteFactory() - Constructor for class edu.isi.pegasus.planner.catalog.site.SiteFactory
-
- SiteFactoryException - Exception in edu.isi.pegasus.planner.catalog.site.impl.old
-
Class to notify of failures while instantiating Site Catalog
implementations.
- SiteFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactoryException
-
Constructs a SiteFactoryException
with no detail
message.
- SiteFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactoryException
-
Constructs a SiteFactoryException
with the specified detailed
message.
- SiteFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactoryException
-
Constructs a SiteFactoryException
with the
specified detailed message and a cause.
- SiteFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactoryException
-
Constructs a SiteFactoryException
with the
specified detailed message and a cause.
- SiteFactoryException - Exception in edu.isi.pegasus.planner.catalog.site
-
Class to notify of failures while instantiating Site Catalog
implementations.
- SiteFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteFactoryException
-
Constructs a SiteFactoryException
with no detail
message.
- SiteFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteFactoryException
-
Constructs a SiteFactoryException
with the specified detailed
message.
- SiteFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteFactoryException
-
Constructs a SiteFactoryException
with the
specified detailed message and a cause.
- SiteFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteFactoryException
-
Constructs a SiteFactoryException
with the
specified detailed message and a cause.
- SiteInfo - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes
-
This is a data class that is used to store information about a single
remote site (pool).
- SiteInfo() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Default Constructor.
- SITEINFO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Array storing the names of the attributes that are stored with the
site.
- SiteInfo2SiteCatalogEntry - Class in edu.isi.pegasus.planner.catalog.site.classes
-
An adapter class that converts SiteInfo object to SiteCatalogEntry object.
- SiteInfo2SiteCatalogEntry() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SiteInfo2SiteCatalogEntry
-
- siteIterator() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsage
-
Returns an iterator to list of String
site identifiers
for which data is available.
- siteIterator() - Method in class edu.isi.pegasus.planner.visualize.WorkflowMeasurements
-
Returns an iterator to list of String
site identifiers
for which data is available.
- siteList - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
-
- siteName - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfo
-
- SiteScrapper - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.util
-
Utility class that scrapes content from a website
- SiteScrapper() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.SiteScrapper
-
- siteSelectionFor(String, String) - Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty
-
siteSelectionFor
- siteSelectionFor(String, String) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
-
- SiteSelector - Interface in edu.isi.pegasus.planner.selector
-
The interface for the Site Selector.
- SiteSelectorFactory - Class in edu.isi.pegasus.planner.selector.site
-
A factory class to load the appropriate type of Site Selector, as
specified by the user at runtime in properties.
- SiteSelectorFactory() - Constructor for class edu.isi.pegasus.planner.selector.site.SiteSelectorFactory
-
- SiteSelectorFactoryException - Exception in edu.isi.pegasus.planner.selector.site
-
Class to notify of failures while instantiating SiteSelector implementations.
- SiteSelectorFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.selector.site.SiteSelectorFactoryException
-
Constructs a SiteSelectorFactoryException
with no detail
message.
- SiteSelectorFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.selector.site.SiteSelectorFactoryException
-
Constructs a SiteSelectorFactoryException
with the specified detailed
message.
- SiteSelectorFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.selector.site.SiteSelectorFactoryException
-
Constructs a SiteSelectorFactoryException
with the
specified detailed message and a cause.
- SiteSelectorFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.selector.site.SiteSelectorFactoryException
-
Constructs a SiteSelectorFactoryException
with the
specified detailed message and a cause.
- SiteStore - Class in edu.isi.pegasus.planner.catalog.site.classes
-
The site store contains the collection of sites backed by a HashMap.
- SiteStore() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
The default constructor.
- size() - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Accessor: Obtains the number of properties known to the project.
- size() - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Returns the number of nodes in the graph.
- size() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Returns the number of nodes in the graph.
- size() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Returns the number of nodes in the partition.
- skippedEntity(String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Receive a notification that an entity was skipped.
- skipWhitespace() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner
-
Skips any white space and comments in the input.
- skipWhitespace() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner
-
Skips any white space and comments in the input.
- SLS - Interface in edu.isi.pegasus.planner.transfer
-
This interface defines the second level staging process, that manages
the transfer of files from the headnode to the worker node temp and back.
- SLSFactory - Class in edu.isi.pegasus.planner.transfer.sls
-
A factory class to load the appropriate type of SLS Implementation to do
the Second Level Staging.
- SLSFactory() - Constructor for class edu.isi.pegasus.planner.transfer.sls.SLSFactory
-
- SLSFactoryException - Exception in edu.isi.pegasus.planner.transfer.sls
-
Class to notify of failures while instantiating SLS implementations.
- SLSFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.transfer.sls.SLSFactoryException
-
Constructs a SLSFactoryException
with no detail
message.
- SLSFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.transfer.sls.SLSFactoryException
-
Constructs a SLSFactoryException
with the specified detailed
message.
- SLSFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.transfer.sls.SLSFactoryException
-
Constructs a SLSFactoryException
with the
specified detailed message and a cause.
- SLSFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.transfer.sls.SLSFactoryException
-
Constructs a SLSFactoryException
with the
specified detailed message and a cause.
- slurpInFile(String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Convenience method to slurp in contents of a file into memory.
- SOLUTION_PREFIX - Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The prefix that the site selector writes out on its stdout to
designate that it is sending a solution.
- sort() - Method in class edu.isi.pegasus.planner.partitioner.Topological
-
Topologically sorts the partition and returns a List of
GraphNode
elements.
- sort() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsage
-
Sorts the records for each site.
- sort() - Method in class edu.isi.pegasus.planner.visualize.WorkflowMeasurements
-
Sorts the records for each site.
- Space - Class in edu.isi.pegasus.planner.visualize.spaceusage
-
A data class that stores the space usage.
- Space(Date) - Constructor for class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
The overloaded constructor.
- Space(Date, String) - Constructor for class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
The overloaded constructor.
- SpaceComparator - Class in edu.isi.pegasus.planner.visualize.spaceusage
-
Comparator for Space objects that allows us to sort on time.
- SpaceComparator() - Constructor for class edu.isi.pegasus.planner.visualize.spaceusage.SpaceComparator
-
- spaceReadingsIterator() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace
-
Returns the readings iterator.
- SpaceUsage - Class in edu.isi.pegasus.planner.visualize.spaceusage
-
A container object that stores the space usage for each site.
- SpaceUsage() - Constructor for class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsage
-
The default store.
- SpaceUsageCallback - Class in edu.isi.pegasus.planner.visualize.spaceusage
-
Implements callback interface to calculate space usage.
- SpaceUsageCallback() - Constructor for class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
-
The default constructor.
- SPARCV7 - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
-
- SPARCV9 - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
-
- SPECIALIZED_TEMPLATES_Q - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- split(String) - Static method in class edu.isi.pegasus.common.util.Separator
-
Splits a fully-qualified identifier into its components.
- splitFQDI(String) - Static method in class edu.isi.pegasus.common.util.Separator
-
Splits a fully-qualified definition identifier into separate
namespace, name and version.
- splitLFN(String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Splits the full qualified logical transformation into its components.
- sponsor_vo - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- sponsor_vo - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- SRM_MOUNT_POINT_PROPERTIES_SUFFIX - Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The suffix to retrive the mount point for SRM server.
- SRM_PROPERTIES_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The property prefix for retrieving SRM properties.
- SRM_SERVICE_URL_PROPERTIES_SUFFIX - Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The suffix to retrive the service url for SRM server.
- Ssh - Class in edu.isi.pegasus.common.credential.impl
-
A convenience class that allows us to determine the path to the user ssh private key file.
- Ssh() - Constructor for class edu.isi.pegasus.common.credential.impl.Ssh
-
The default constructor.
- SSH_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
- SSH_PRIVATE_KEY_VARIABLE - Static variable in class edu.isi.pegasus.common.credential.impl.Ssh
-
The name of the environment variable that specifies the path to the
s3cfg file.
- st - Variable in class edu.isi.pegasus.planner.provisioner.Node
-
- stack(boolean) - Method in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
-
Run Task placement phase of BTS algorithm
- StackBasedXMLParser - Class in edu.isi.pegasus.planner.parser
-
An abstract base class that XML Parsers can use if they use stack internally
to store the elements encountered while parsing XML documents using SAX
- StackBasedXMLParser(PegasusBag) - Constructor for class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
The overloaded constructor.
- stacked - Variable in class edu.isi.pegasus.planner.provisioner.Node
-
- STAGE_IN_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotea a job that is used to stage in the input files for a compute job.
- STAGE_IN_PREFIX - Static variable in interface edu.isi.pegasus.planner.transfer.Refiner
-
The prefix for the jobs which are added to transfer the files to a job's
execution pool from the location returned from the replica mechanism.
- STAGE_IN_REMOTE_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
The constant to denote that a stage-in transfer is to be exectuted remotely
- STAGE_IN_TPT_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
The property name to get the sites for which stage-in transfers need to
be TPT.
- STAGE_IN_TPT_REMOTE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
The constant to denote that a stage-in transfer is to be executed
on the remote site.
- STAGE_IN_TPT_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
The property name to get the sites for which stage-in TPT transfers need to
be executed on the remote site.
- STAGE_IN_TPT_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
The constant to denote that a stage-in transfer is to be third party.
- STAGE_IN_TRANSFERS_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
The property name to get the sites for which stage-in transfers need to
be executed remotely.
- STAGE_IN_WORKER_PACKAGE_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a job that stages the worker package.
- STAGE_OUT_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a job that transfers the date generated by a compute job to the
output pool specified by the user.
- STAGE_OUT_PREFIX - Static variable in interface edu.isi.pegasus.planner.transfer.Refiner
-
The prefix for the jobs which are added to transfer the files generated by
a job on an execution pool to the output pool.
- STAGE_OUT_REMOTE_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
The constant to denote that a stage-out transfer is to be exectuted remotely
- STAGE_OUT_TPT_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
The property name to get the sites for which stage-out transfers need to
be TPT.
- STAGE_OUT_TPT_REMOTE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
The constant to denote that a stage-out transfer is to be executed
on the remote site.
- STAGE_OUT_TPT_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
The property name to get the sites for which stage-out TPT transfers need to
be executed on the remote site.
- STAGE_OUT_TPT_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
The constant to denote that a stage-out transfer is to be third party.
- STAGE_OUT_TRANSFERS_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
The property name to get the sites for which stage-out transfers need to
be executed remotely.
- Staged - Class in edu.isi.pegasus.planner.catalog.transformation.mapper
-
This implementation only generates maps for sites where transformation can be staged
- Staged(PegasusBag) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.mapper.Staged
-
The protected constructor.
- Staged - Class in edu.isi.pegasus.planner.selector.transformation
-
This implementation of the Selector select a transformation of type STAGEABLE on all sites.
- Staged() - Constructor for class edu.isi.pegasus.planner.selector.transformation.Staged
-
- stageInOnRemoteSite(String) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
Returns a boolean indicating whether to execute stage-in transfers on
remote site or not.
- stageInThirdParty(String) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Returns a boolean indicating whether to use third party transfers for
stage-in transfers or not.
- stageInThirdPartyRemote(String) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Returns a boolean indicating whether to execute third party transfers for
stage-in on remote site or not.
- stageOutOnRemoteSite(String) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
Returns a boolean indicating whether to execute stage-out transfers on
remote site or not.
- stageOutThirdParty(String) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Returns a boolean indicating whether to use third party transfers for
stage-out transfers or not.
- stageOutThirdPartyRemote(String) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Returns a boolean indicating whether to execute third party transfers for
stage-out on remote site or not.
- stageSLSFilesViaFirstLevelStaging() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether to stage sls files via Pegasus
First Level Staging or let Condor do it.
- stagingIntroducedFor(List, String) - Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty
-
stagingIntroducedFor
- stagingIntroducedFor(List, String) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
-
- stagingSiteMappingToString() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Convers the staging site mappings to comma separated list of
executionsite=stagingsite mappings
- Stamp - Class in edu.isi.pegasus.planner.invocation
-
The Stamp element.
- Stamp() - Constructor for class edu.isi.pegasus.planner.invocation.Stamp
-
The default constructor
- Stamp(String) - Constructor for class edu.isi.pegasus.planner.invocation.Stamp
-
Constructs a piece of data.
- STAMP_FILENAME - Static variable in class edu.isi.pegasus.common.util.Version
-
Basename of the build stamp file.
- Stampede - Class in edu.isi.pegasus.planner.code.generator
-
A Stampede Events Code Generator that generates events in netlogger format
for the exectuable workflow.
- Stampede() - Constructor for class edu.isi.pegasus.planner.code.generator.Stampede
-
- STAMPEDE_EVENT_GENERATOR_CLASS - Static variable in class edu.isi.pegasus.planner.code.CodeGeneratorFactory
-
The name of the class implementing the Stampede Event Generator
- STANDARD_UNIVERSE - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
- STANDARD_UNIVERSE - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The condor universe key value for standard universe.
- START_COMMENT_TAG - Static variable in class edu.isi.pegasus.common.util.XMLWriter
-
- START_ELEMENT_TAG - Static variable in class edu.isi.pegasus.common.util.XMLWriter
-
- START_END_ELEMENT_TAG - Static variable in class edu.isi.pegasus.common.util.XMLWriter
-
- START_POSTFIX - Static variable in class edu.isi.ikcap.workflows.util.logging.LogEvent
-
- startDocument() - Method in class edu.isi.pegasus.planner.client.DAXValidator
-
- startDocument() - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
This method specifies what to do when the parser is at the beginning
of the document.
- startElement(String) - Method in class edu.isi.pegasus.common.util.XMLWriter
-
- startElement(String, int) - Method in class edu.isi.pegasus.common.util.XMLWriter
-
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
-
This method defines the action to take when the parser begins to parse
an element.
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.client.DAXValidator
-
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Overriding the empty implementation provided by
DefaultHandler of ContentHandler.
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
This method defines the action to take when the parser begins to parse
an element.
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.parser.Parser
-
An empty implementation is provided by DefaultHandler of ContentHandler.
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.parser.PDAXParser
-
An empty implementation is provided by DefaultHandler of ContentHandler.
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
This method defines the action to take when the parser begins to parse
an element.
- startMonitoring() - Method in interface edu.isi.pegasus.planner.code.CodeGenerator
-
Starts monitoring of the workflow by invoking a workflow monitor daemon.
- startMonitoring() - Method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Starts monitoring of the workflow by invoking a workflow monitor daemon.
- startMonitoring() - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Starts monitoring of the workflow by invoking a workflow monitor daemon
tailstatd.
- startMonitoring() - Method in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
Not implemented
- startMonitoring() - Method in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
Not implemented
- startMonitoring() - Method in class edu.isi.pegasus.planner.code.generator.Stampede
-
- startParser(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
-
The main method that starts the parsing.
- startParser(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
- startParser(String) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
- startParser(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
This starts the parsing of the file by the parser.
- startParser(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
The main method that starts the parsing.
- startParser(String) - Method in class edu.isi.pegasus.planner.parser.Parser
-
Start the parser.
- startParser(String) - Method in class edu.isi.pegasus.planner.parser.PDAXParser
-
Ends up starting the parsing of the file , by the underlying parser.
- startParser(String) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogParser
-
The main method that starts the parsing.
- startPrefixMapping(String, String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
There is a prefix or namespace defined, put the prefix and its URI
in the HashMap.
- STAT - Static variable in class edu.isi.pegasus.planner.classes.Profile
-
- Stat - Class in edu.isi.pegasus.planner.namespace
-
The stat namespace object.
- Stat() - Constructor for class edu.isi.pegasus.planner.namespace.Stat
-
The default constructor.
- Stat(Map) - Constructor for class edu.isi.pegasus.planner.namespace.Stat
-
The overloaded constructor.
- StatCall - Class in edu.isi.pegasus.planner.invocation
-
This class is the container for a complete call to stat() or fstat().
- StatCall() - Constructor for class edu.isi.pegasus.planner.invocation.StatCall
-
Default c'tor: Construct a hollow shell and allow further
information to be added later.
- StatCall(String) - Constructor for class edu.isi.pegasus.planner.invocation.StatCall
-
Construct a specific but empty stat call object.
- statemap - Static variable in class edu.isi.pegasus.common.util.Separator
-
Maps the state and character class to the follow-up state.
- statemap2 - Static variable in class edu.isi.pegasus.common.util.Separator
-
Maps the new state from current state and character class.
- static_method(String, Object[]) - Method in class edu.isi.pegasus.common.util.DynamicLoader
-
Dynamically instantiates a class from a static method which
constructs the resulting object.
- StatInfo - Class in edu.isi.pegasus.planner.invocation
-
This class is the container for the results of a call to either
stat() or fstat().
- StatInfo() - Constructor for class edu.isi.pegasus.planner.invocation.StatInfo
-
Default c'tor: Construct a hollow shell and allow further
information to be added later.
- statistics() - Method in class edu.isi.pegasus.planner.client.DAXValidator
-
Show how many warnings, errors and fatals were shown.
- Status - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- Status - Class in edu.isi.pegasus.planner.invocation
-
This class encapsulates the exit code or reason of termination for
a given job.
- Status() - Constructor for class edu.isi.pegasus.planner.invocation.Status
-
Default c'tor: Construct a hollow shell and allow further
information to be added later.
- Status(int) - Constructor for class edu.isi.pegasus.planner.invocation.Status
-
Constructs a layer with the raw exit code.
- Status(int, JobStatus) - Constructor for class edu.isi.pegasus.planner.invocation.Status
-
Constructs the complete class with raw exit code
and a status child describing the exit code.
- stdErr - Variable in class edu.isi.pegasus.planner.classes.Job
-
File which contains standard error.
- stdIn - Variable in class edu.isi.pegasus.planner.classes.Job
-
File which contains stdin (keyboard input).
- stdOut - Variable in class edu.isi.pegasus.planner.classes.Job
-
File which contains stdout.
- STORAGE_DIR - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The constant to be passed to the accessor functions to get or set the
storage directory of the grid ftp server.
- StorageType - Class in edu.isi.pegasus.planner.catalog.site.classes
-
An Abstract Data class to describe the filesystem layout on a site, both
shared and local on a site/node
- StorageType() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
The default constructor
- StorageType(LocalDirectory, SharedDirectory) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
The overloaded constructor.
- store(Map) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Stores replica catalog entries into the store.
- StoreGvdsMdsInfo(NamingEnumeration, String, PoolConfig) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
- Stork - Class in edu.isi.pegasus.planner.code.generator
-
This implementation generates files that can be understood by Stork.
- Stork() - Constructor for class edu.isi.pegasus.planner.code.generator.Stork
-
The default constructor.
- Stork - Class in edu.isi.pegasus.planner.transfer.implementation
-
The implementation that creates transfer jobs referring to the stork data
placement scheduler that can handle only one transfer per job.
- Stork(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.Stork
-
The overloaded constructor, that is called by the Factory to load the
class.
- strargs - Variable in class edu.isi.pegasus.planner.classes.Job
-
The arguements for the job.
- Strategy - Interface in edu.isi.pegasus.planner.refiner.createdir
-
The interface that defines how the cleanup job is invoked and created.
- STREAM_STDERR_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that specifies whether to stream stderr or not
- STREAM_STDOUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that specifies whether to stream stderr or not
- StreamGobbler - Class in edu.isi.pegasus.common.util
-
A Stream gobbler class to take care of reading from a stream and optionally
write out to another stream.
- StreamGobbler(InputStream, StreamGobblerCallback) - Constructor for class edu.isi.pegasus.common.util.StreamGobbler
-
The overloaded constructor.
- StreamGobblerCallback - Interface in edu.isi.pegasus.common.util
-
This interface defines the callback calls that are called from within the
StreamGobbler while working on a stream.
- stringInList(String, List) - Method in class edu.isi.pegasus.planner.refiner.Engine
-
- stringInPegVector(String, Vector) - Method in class edu.isi.pegasus.planner.refiner.Engine
-
Returns true if a particular String is in the Vector of PegasusFile objects.
- stringInVector(String, Vector) - Method in class edu.isi.pegasus.planner.refiner.Engine
-
Returns true if a particular String is in the Vector of strings.
- STYLE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key, that denotes the style of the dag that is constructed.
- STYLE_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
The name of the style being implemented.
- STYLE_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
-
The name of the style being implemented.
- STYLE_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorG
-
The name of the style being implemented.
- STYLE_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideIN
-
The name of the style being implemented.
- STYLE_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideinWMS
-
The name of the style being implemented.
- STYLE_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.GLite
-
The name of the style being implemented.
- SUBDAG_EXTERNAL_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the key that indicates the path to the external subdag
- SUBDAXGenerator - Class in edu.isi.pegasus.planner.code.generator.condor
-
The class that takes in a dax job specified in the DAX and renders it into
a SUBDAG with pegasus-plan as the appropriate prescript.
- SUBDAXGenerator() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The default constructor.
- Submit - Class in edu.isi.pegasus.planner.catalog.transformation.mapper
-
This implementation of the TCMapper returns a TCMap which only contains
Stageable executables from the Local site.
- Submit(PegasusBag) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.mapper.Submit
-
The protected constructor.
- Submit - Class in edu.isi.pegasus.planner.selector.transformation
-
This implementation of the Selector select a transformation of type STAGEABLE and only on the submit site.
- Submit() - Constructor for class edu.isi.pegasus.planner.selector.transformation.Submit
-
- SUBMIT_DIR_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The submit directory for the workflow.
- SUBMIT_DIRECTORY_PREFIX - Static variable in class edu.isi.pegasus.planner.common.RunDirectoryFilenameFilter
-
The prefix for the submit directory.
- SUBMIT_DIRECTORY_PREFIX - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The prefix for the submit directory.
- SUBMIT_HOSTNAME_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The key for the submit hostname.
- SubmitDirectoryFilenameFilter - Class in edu.isi.pegasus.planner.client
-
A filename filter for identifying the submit directory
- SubmitDirectoryFilenameFilter(String) - Constructor for class edu.isi.pegasus.planner.client.SubmitDirectoryFilenameFilter
-
Overloaded constructor.
- submitToScheduler() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns whether to submit the workflow or not.
- submitWorkflow(String) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Submits the workflow for execution using pegasus-run, a wrapper around
pegasus-submit-dag.
- SUCCESS_MESSAGE - Static variable in class edu.isi.pegasus.planner.client.CPlanner
-
The message to be logged in case of empty executable workflow.
- SUFFIX_TEMPORARY_FILE - Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The suffix to be used while creating a temporary file to pass to
the external siteselector.
- Sum - Class in edu.isi.pegasus.planner.namespace.aggregator
-
An implementation of the Aggregator interface that sums the profile values.
- Sum() - Constructor for class edu.isi.pegasus.planner.namespace.aggregator.Sum
-
- SUM_AGGREGATOR - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
Static Handle to the sum aggregator.
- SUNOS - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
-
- SUPPORTED_TRANSFORMATION_FORMAT - Static variable in class edu.isi.pegasus.planner.client.TCConverter
-
The supported transformation formats.
- Swap - Class in edu.isi.pegasus.planner.invocation
-
The swap element.
- Swap() - Constructor for class edu.isi.pegasus.planner.invocation.Swap
-
The default constructor
- symbolTable() - Static method in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
Singleton access to the symbol table as a whole.
- symbolTable() - Static method in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
Singleton access to the symbol table as a whole.
- SYMLINK_URL_SCHEME - Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The scheme name for file url.
- symlinkCommonLog() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Completely disable placing a symlink for Condor common log (indiscriminately).
- SysInfo - Class in edu.isi.pegasus.planner.catalog.classes
-
A container class to keep system information associated with a Site entry in
the Site Catalog or a Transformation in the Transformation Catalog.
- SysInfo() - Constructor for class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
The default constructor.
- SysInfo(String) - Constructor for class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
This constructor takes the system information in the format arch::os:osversion:glibc
- SYSINFO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The constant to be passed to the accessor functions to get or set the
VDSSysInfo
site.
- SYSINFO - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
token value for the reserved work sysinfo.
- SysInfo.Architecture - Enum in edu.isi.pegasus.planner.catalog.classes
-
Enumerates the new architecture types supported in Pegasus.
- SysInfo.Architecture() - Constructor for enum edu.isi.pegasus.planner.catalog.classes.SysInfo.Architecture
-
- SysInfo.OS - Enum in edu.isi.pegasus.planner.catalog.classes
-
Enumerates the new OS types supported in Pegasus.
- SysInfo.OS() - Constructor for enum edu.isi.pegasus.planner.catalog.classes.SysInfo.OS
-
- system - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
-
- system - Variable in class edu.isi.pegasus.planner.client.TCClient
-
- SYSTEM_ARCHITECTURE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- SYSTEM_ARCHITECTURE - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
-
- SYSTEM_ATTRIBUTE_KEY - Static variable in class edu.isi.pegasus.planner.invocation.Uname
-
The system attribute for the uname
- SYSTEM_HOSTADDR - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- SYSTEM_HOSTADDR - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
-
- SYSTEM_HOSTNAME - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- SYSTEM_HOSTNAME - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
-
- SYSTEM_NODENAME - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- SYSTEM_NODENAME - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
-
- SYSTEM_NUMBEROFPROCESSORS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- SYSTEM_NUMBEROFPROCESSORS - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
-
- SYSTEM_OS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- SYSTEM_OS - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
-
- systemstring - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
-
- T2 - Class in edu.isi.pegasus.planner.transfer.implementation
-
The implementation that creates transfer jobs referring to the T2
executable distributed with the Pegasus.
- T2(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.T2
-
The overloaded constructor, that is called by the Factory to load the
class.
- TABSPACE - Static variable in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
- TAIL_INDEX - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The index of the tail job.
- TailStatd - Class in edu.isi.pegasus.planner.visualize.spaceusage
-
The callback parses the jobstate.log file to order the events of how
the jobs executed.
- TailStatd() - Constructor for class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd
-
The default constructor.
- TAILSTATD_TIMING_SOURCE - Static variable in class edu.isi.pegasus.planner.client.PlotNodeUsage
-
The tailstatd timing source.
- TAILSTATD_TIMING_SOURCE - Static variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage
-
The tailstatd timing source.
- Task - Class in edu.isi.pegasus.planner.invocation
-
The proc element.
- Task() - Constructor for class edu.isi.pegasus.planner.invocation.Task
-
The default constructor
- TASK_EDGE_EVENT_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The event name for task edge
- TASK_EVENT_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The event name for task info
- TASK_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The attribute key for task id
- TASK_MAP_EVENT_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The event name for task map event
- TASK_TRANSFORMATION_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The attribute key for transformation
- taskName - Variable in class edu.isi.pegasus.planner.provisioner.Node
-
- tc - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
-
- tc - Variable in class edu.isi.pegasus.planner.client.TCClient
-
- TC_DATA_FILE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- TC_INITIALIZATION_FILES - Static variable in class edu.isi.pegasus.planner.client.TCConverter
-
List of sql initialization files
- TC_TEXT_FILE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
- TCAdd - Class in edu.isi.pegasus.planner.catalog.transformation.client
-
- TCAdd(TransformationCatalog, LogManager, Map) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.TCAdd
-
- TCClient - Class in edu.isi.pegasus.planner.client
-
A common client to add, modify, delete, query any Transformation Catalog
implementation.
- TCClient() - Constructor for class edu.isi.pegasus.planner.client.TCClient
-
- TCConverter - Class in edu.isi.pegasus.planner.client
-
A client to convert transformation catalog between different formats.
- TCConverter() - Constructor for class edu.isi.pegasus.planner.client.TCConverter
-
The default constructor.
- TCDelete - Class in edu.isi.pegasus.planner.catalog.transformation.client
-
This is a TCClient class which handles the Delete Operations.
- TCDelete(TransformationCatalog, LogManager, Map) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.TCDelete
-
- TCFormatUtility - Class in edu.isi.pegasus.planner.catalog.transformation.client
-
This is a utility class for converting transformation catalog into different formats.
- TCFormatUtility() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.TCFormatUtility
-
- tclist - Variable in class edu.isi.pegasus.planner.selector.transformation.RoundRobin
-
- TCMap - Class in edu.isi.pegasus.planner.classes
-
This is a data class to store the TCMAP for a particular dag.
- TCMap() - Constructor for class edu.isi.pegasus.planner.classes.TCMap
-
Default constructor.
- TCMode - Class in edu.isi.pegasus.planner.catalog.transformation
-
This class defines all the constants
referring to the various interfaces
to the transformation catalog, and
used by the Concrete Planner.
- TCMode() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.TCMode
-
- TCQuery - Class in edu.isi.pegasus.planner.catalog.transformation.client
-
- TCQuery(TransformationCatalog, LogManager, Map) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
- TCQuery.LFNComparator - Class in edu.isi.pegasus.planner.catalog.transformation.client
-
The comparator that is used to group the RLSAttributeObject objects by the
value in the key field.
- TCQuery.LFNComparator() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery.LFNComparator
-
- TCType - Enum in edu.isi.pegasus.planner.catalog.transformation.classes
-
This is an enumerated data class for the different types of transformation.
- TCType() - Constructor for enum edu.isi.pegasus.planner.catalog.transformation.classes.TCType
-
- tempFT - Variable in class edu.isi.pegasus.planner.provisioner.Node
-
- TEMPLATE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- TEMPLATE_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- TEMPLATE_ID - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
-
- Temporary - Class in edu.isi.pegasus.planner.invocation
-
This class is the container for a temporary file object.
- Temporary() - Constructor for class edu.isi.pegasus.planner.invocation.Temporary
-
Default c'tor: Construct a hollow shell and allow further
information to be added later.
- Temporary(String, int) - Constructor for class edu.isi.pegasus.planner.invocation.Temporary
-
Constructs a temporary file object.
- tempST - Variable in class edu.isi.pegasus.planner.provisioner.Node
-
- Tentacles - Class in edu.isi.pegasus.planner.refiner.createdir
-
This Strategy instance places the create directory jobs at the top of the graph.
- Tentacles() - Constructor for class edu.isi.pegasus.planner.refiner.createdir.Tentacles
-
- test(String) - Static method in class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser
-
Helper test method that tries and catches exception
- TestDAXParser - Class in edu.isi.pegasus.planner.parser
-
A Test Class to demonstrate use of DAXParser and illustrates how to use
the Callbacks for the parser.
- TestDAXParser() - Constructor for class edu.isi.pegasus.planner.parser.TestDAXParser
-
- testForFile(String) - Method in class edu.isi.pegasus.planner.parser.Parser
-
Tests whether the file exists or not.
- TestLogFormatter - Class in edu.isi.pegasus.common.logging
-
Test program to test out LogFormatter API
- TestLogFormatter() - Constructor for class edu.isi.pegasus.common.logging.TestLogFormatter
-
- TestMyOSG - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.test
-
Testing class to test the MyOSG implementation.
- TestMyOSG() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.test.TestMyOSG
-
- TestNamespace - Class in edu.isi.pegasus.planner.namespace
-
Test Class for namespaces.
- TestNamespace() - Constructor for class edu.isi.pegasus.planner.namespace.TestNamespace
-
- TestReplicaCatalog - Class in edu.isi.pegasus.planner.catalog.replica
-
A Test program that shows how to load a Replica Catalog, and query for entries sites.
- TestReplicaCatalog() - Constructor for class edu.isi.pegasus.planner.catalog.replica.TestReplicaCatalog
-
- TestSiteCatalog - Class in edu.isi.pegasus.planner.catalog.site.impl.old
-
A Test program that shows how to load a Site Catalog, and query for all sites.
- TestSiteCatalog() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.TestSiteCatalog
-
- TestSiteCatalog - Class in edu.isi.pegasus.planner.catalog.site
-
A Test program that shows how to load a Site Catalog, and query for all sites.
- TestSiteCatalog() - Constructor for class edu.isi.pegasus.planner.catalog.site.TestSiteCatalog
-
- TestTPT - Class in edu.isi.pegasus.planner.transfer
-
Client for testing the TPT class.
- TestTPT() - Constructor for class edu.isi.pegasus.planner.transfer.TestTPT
-
- TestTransformationCatalog - Class in edu.isi.pegasus.planner.catalog.transformation
-
A Test program that shows how to load a Replica Catalog, and query for entries sites.
- TestTransformationCatalog() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.TestTransformationCatalog
-
- TestVORSSiteCatalog - Class in edu.isi.pegasus.planner.catalog.site
-
A Test program that shows how to load a Site Catalog, and query for all sites.
- TestVORSSiteCatalog() - Constructor for class edu.isi.pegasus.planner.catalog.site.TestVORSSiteCatalog
-
- Text - Class in edu.isi.pegasus.planner.catalog.site.impl.old
-
It gets the information about a pool by reading the multiline site
catalog that is in a multiline format.
- Text(String) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.Text
-
The private constructor that is called only once, when the Singleton is
invoked for the first time.
- Text(String, String) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.Text
-
The private constructor that is called to return a non singleton instance
of the class.
- Text - Class in edu.isi.pegasus.planner.catalog.transformation.impl
-
A File based Transformation Catalog where each entry spans multiple lines.
- Text() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Default constructor.
- TEXT_FORMAT - Static variable in class edu.isi.pegasus.planner.client.SCClient
-
The textual format.
- TEXT_FORMAT - Static variable in class edu.isi.pegasus.planner.client.TCConverter
-
The textual format.
- TEXT_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory
-
The name of the class that connects to an multi line Text based Site Catalog.
- TEXT_READ_CLASS - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
- TEXT_READ_VALUE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Constants for multiline text pool read.
- TIME_END - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- TIME_END - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
-
- TIME_START - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
-
- TIME_START - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
-
- timeMap - Variable in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
-
- TIMESTAMP_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The workflow timestamp.
- timeString - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
- timeStringLock - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
- tlevel - Variable in class edu.isi.pegasus.planner.provisioner.Node
-
- TMP_FILE_NAME - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.test.TestMyOSG
-
- tmp_loc - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- tmp_loc - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- tmp_space - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
-
- tmp_space - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
-
- toArchitecture() - Method in class edu.isi.pegasus.planner.invocation.Uname
-
An adapter method to convert the uname object to the architecture object.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Converts the contents of the map into the string that can be put in the
Condor file for printing.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Converts the contents of the map into the string that can be put in the
Condor file for printing.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.ENV
-
Converts the contents of the map into the string that can be put in the
Condor file for printing.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.Globus
-
Converts the contents of the map into the string that can be put in the
Condor file for printing.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.Hints
-
Converts the contents of the map into the string that can be put in the
Condor file for printing.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Returns a condor description that can be used to put the contents of the
namespace into the condor submit file during code generation.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Converts the contents of the map into the string that can be put in the
Condor file for printing.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.Selector
-
Converts the contents of the map into the string that can be put in the
Condor file for printing.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.Stat
-
Converts the contents of the map into the string that can be put in the
Condor file for printing.
- toDOT() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the DOT description of the object.
- toDOT(Writer, String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the DOT description of the object.
- toDOT() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the DOT description of the object.
- toDOT(Writer, String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the DOT description of the object.
- toDOT() - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Returns the DOT description of the object.
- toDOT(Writer, String) - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Returns the DOT description of the object.
- toFile(String, String) - Method in class edu.isi.pegasus.planner.client.SCClient
-
Writes out to a file, a string.
- toJVMOptions() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Converts the vds properties that need to be passed to the jvm as an
option.
- Token - Interface in edu.isi.pegasus.planner.parser.tokens
-
Base class for the tokens passed from the Text Scanner to the parser.
- toMultiLine() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
Returns the textual description of the contents of GlobusVersion
object in the multiline format.
- toMultiLine() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
Returns the textual description of the contents of GridFTPServer
object in the multiline format.
- toMultiLine() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
Returns the textual description of the contents of JobManager
object in the multiline format.
- toMultiLine() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC
-
Returns the textual description of the contents of LRC
object in the multiline format.
- toMultiLine() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
Returns the textual description of the contents of PoolConfig
object in the multiline format.
- toMultiLine() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Returns the textual description of the contents of SiteInfo
object in the multiline format.
- toMultiLine() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
Returns the textual description of the contents of WorkDir
object in the multiline format.
- toMultiLine() - Method in class edu.isi.pegasus.planner.classes.Profile
-
Returns the textual description of the contents of Profile
object in the multiline format.
- toMultiLine(PoolConfig) - Method in class edu.isi.pegasus.planner.client.SCClient
-
Returns the String description of the contents of PoolConfig
object passed.
- toNode - Variable in class edu.isi.pegasus.planner.provisioner.Edge
-
- toOptions() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Generates the argument string corresponding to these options that can
be used to invoke Pegasus.
- topNode - Variable in class edu.isi.pegasus.planner.provisioner.Estimator
-
- Topological - Class in edu.isi.pegasus.planner.partitioner
-
Does a topological sort on the Partition.
- Topological(Partition) - Constructor for class edu.isi.pegasus.planner.partitioner.Topological
-
The overloaded constructor.
- topologicalSortIterator() - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Returns an iterator for the graph that traverses in topological sort
order.
- topologicalSortIterator() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Returns an iterator for the graph that traverses in topological sort
order.
- TopologicalSortIterator - Class in edu.isi.pegasus.planner.partitioner.graph
-
Does a topological sort on the Partition.
- TopologicalSortIterator(Graph) - Constructor for class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
-
The overloaded constructor.
- toString() - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Format a message in CEDPS Best Practices format.
- toString() - Method in class edu.isi.pegasus.common.util.Version
-
Returns a string containing the concatenated version.
- toString() - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the string description of the object.
- toString(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Writes out the contents of the object as a String
- toString() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Returns the output of the data class as string.
- toString() - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Converts the contents into a string.
- toString() - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData
-
Writes out the object as a string.
- toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
-
- toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfo
-
- toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
-
- toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
-
- toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteVOOwnershipInfo
-
- toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
Returns the textual description of the contents of GlobusVersion
object.
- toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
- toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
Returns the textual description of the contents of LRC
object.
- toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
Returns the textual description of the contents of JobManager
object.
- toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC
-
Returns the textual description of the contents of LRC
object.
- toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Returns the textual description of the contents of SiteInfo
object.
- toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
Returns the textual description of the contents of WorkDir
object.
- toString() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
-
Returns the string value of the architecture.
- toString() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
-
Returns the string value of the operating system.
- toString() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Returns the output of the data class as string.
- toString() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
gets the String mVersion of the
data class
- toString() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the String description of the dag associated with this object.
- toString() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns a textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
Returns a string version of this.
- toString() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Converts object to String
- toString() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the a textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Returns a textual description of the DAG Job.
- toString() - Method in class edu.isi.pegasus.planner.classes.Data
-
Returns the String version of the data object, which is in human readable
form.
- toString() - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Returns a textual description of the DAX Job.
- toString() - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Returns a textual interpretation of the object.
- toString() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns a textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.classes.NameValue
-
Writes out the contents of the class to a String
in form suitable for displaying.
- toString() - Method in class edu.isi.pegasus.planner.classes.Notifications
-
Returns a String description of the object
- toString() - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Returns the textual description.
- toString() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the String version of the data object, which is in human readable
form.
- toString() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns a textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the textual description of all the options that were set for
the planner.
- toString() - Method in class edu.isi.pegasus.planner.classes.Profile
-
This method returns a string of the contents of this object.
- toString() - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Returns the textual description of the data class.
- toString() - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns the textual description of the data class.
- toString() - Method in class edu.isi.pegasus.planner.classes.TCMap
-
Returns the textual description of the contents of the object
- toString(String) - Method in class edu.isi.pegasus.planner.classes.TCMap
-
Returns a textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.classes.TransferJob
-
Returns a textual description of the Transfer Job.
- toString() - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Returns a textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.dax.Executable
-
- toString() - Method in class edu.isi.pegasus.planner.dax.Invoke
-
Returns the object as String
- toString() - Method in class edu.isi.pegasus.planner.dax.Parent
-
- toString() - Method in class edu.isi.pegasus.planner.dax.Transformation
-
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.ArgEntry
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Arguments
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.CommandLine
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Data
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.EnvEntry
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Environment
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.File
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Ignore
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.JobStatusRegular
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.MachineInfo
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Status
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.WorkingDir
-
Converts the active state into something meant for human consumption.
- toString(String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Converts the contents of the map into the string that can be put in the
Condor file for printing.
- toString() - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Returns the contents as String.
- toString() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments
-
Returns the arguments as string
- toString() - Method in class edu.isi.pegasus.planner.parser.tokens.Identifier
-
Returns the textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The textual representation of the graph node.
- toString() - Method in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
-
Returns a textual description of the Bag.
- toString() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
The textual representation of the graph node.
- toString() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Returns a String version of the object.
- toString() - Method in class edu.isi.pegasus.planner.ranking.Ranking
-
Returns a textual description.
- toString() - Method in class edu.isi.pegasus.planner.selector.replica.Regex.Rank
-
Returns the textual representation of this
- toString() - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
-
Writes out the contents of the class to a String in form suitable for
displaying.
- toString() - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer
-
Returns the textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain.TransferChain
-
Returns the textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
Returns a textual description of the state as
(stageinRemote,interRemote,stageoutRemote).
- toString() - Method in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
Returns a textual description of the state as
(stageinRemote,interRemote,stageoutRemote,stageinTPT,interTPT,stageOutTPT).
- toString() - Method in class edu.isi.pegasus.planner.visualize.JobMeasurements
-
Returns a textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement
-
Returns textual description.
- toString() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace
-
Returns a textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
-
Returns a textual description of the content
- toString() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsage
-
Returns textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.visualize.WorkflowMeasurements
-
Returns textual description of the object.
- TOTAL_MEM - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the
total memory.
- TOTAL_NODES - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the total
number of nodes.
- TOTAL_SIZE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The constant to be passed to the accessor functions to get or set the
total size.
- TOTAL_SIZE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
The constant to be passed to the accessor functions to get or set the
total space available.
- totalET - Variable in class edu.isi.pegasus.planner.provisioner.Estimator
-
- toTCString() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Prints out a TC file format String.
- toText(TransformationCatalogEntry, String, String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCFormatUtility
-
Converts the transformation catalog entry object to the multi line
textual representation.
- toTextFormat(TransformationStore) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCFormatUtility
-
Converts the transformations into multi line text format
- toXML(String, String) - Method in class edu.isi.pegasus.common.util.XMLOutput
-
Dumps the state of the current element as XML output.
- toXML(Writer, String) - Method in class edu.isi.pegasus.common.util.XMLOutput
-
Convenience adaptor method invoking the equivalent of:
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.common.util.XMLOutput
-
Dump the state of the current element as XML output.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Writes out the xml description of the object.
- toXML() - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the xml description of the object.
- toXML() - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData
-
Returns the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServer
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeScratch
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeStorage
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.InternalMountPoint
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.LocalDirectory
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SharedDirectory
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Writes out the contents of the replica store as XML document
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerSharedDirectory
-
Writes out the xml description of the object.
- toXML() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
Returns the XML description of the contents of Gridftp object.
- toXML() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
Returns the XML description of the contents of LRC
object.
- toXML() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
Returns the XML description of the contents of JobManager
object.
- toXML() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC
-
Returns the XML description of the contents of LRC
object.
- toXML() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
Returns the XML description of the contents of PoolConfig
object.
- toXML() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Returns the XML description of the contents of SiteInfo
object.
- toXML() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
Returns the XML description of the contents of WorkDir
object.
- toXML() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns an xml output of the contents of the data class.
- toXML() - Method in class edu.isi.pegasus.planner.classes.Profile
-
This method returns an xml of the contents of this object.
- toXML(PoolConfig) - Method in class edu.isi.pegasus.planner.client.SCClient
-
Returns the XML description of the contents of PoolConfig
object passed, conforming to pool config schema found at
http://pegasus.isi.edu/schema/sc-2.0.xsd.
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Generates a DAX representation.
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Write the XML representation of this object
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Write the XML representation of this object
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.DAG
-
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.DAX
-
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.Executable
-
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Executable
-
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.File
-
Write the file object
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.File
-
Write the file object, with indent level N
- toXML(XMLWriter, int, String) - Method in class edu.isi.pegasus.planner.dax.File
-
Write the file object as XML but render it as the elementname
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.Invoke
-
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Invoke
-
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Job
-
Overrides Base TOXML method.
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.MetaData
-
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.MetaData
-
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.Parent
-
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Parent
-
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.PFN
-
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.PFN
-
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.Profile
-
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Profile
-
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.Transformation
-
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Transformation
-
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.ArgEntry
-
Dumps the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.ArgString
-
Dumps the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.ArgString
-
Dump the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.ArgVector
-
Dumps the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.ArgVector
-
Dump the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.CommandLine
-
Dumps the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.CommandLine
-
Dump the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.Data
-
Dumps the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Data
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Descriptor
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.EnvEntry
-
Dumps the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Environment
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Fifo
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Ignore
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Dumps the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Dumps the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Dump the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusRegular
-
Dumps the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusRegular
-
Dump the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Dumps the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Dump the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Dumps the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.MachineInfo
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Regular
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Status
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Temporary
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Dump the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.WorkingDir
-
Dumps the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.WorkingDir
-
Dump the state of the current element as XML output.
- toXML(Writer) - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Returns the xml description of the object.
- toXML() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Returns the xml description of the object.
- toXML(Writer) - Method in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
-
Returns the xml description of the object.
- toXML() - Method in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
-
Returns the interaction assertions as a XML blob.
- toXML(Writer) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.XMLProducer
-
Returns the xml description of the object.
- toXML() - Method in interface edu.isi.pegasus.planner.provenance.pasoa.XMLProducer
-
Returns the interaction assertions as a XML blob.
- TPT - Class in edu.isi.pegasus.planner.transfer
-
A common class, that builds up the third party state for the sites from
the properties file.
- TPT() - Constructor for class edu.isi.pegasus.planner.transfer.TPT
-
The default constructor.
- TPT(PegasusProperties) - Constructor for class edu.isi.pegasus.planner.transfer.TPT
-
The overloaded constructor.
- TPT.TPTState - Class in edu.isi.pegasus.planner.transfer
-
An inner class that holds the third party state for a particular site.
- TPT.TPTState() - Constructor for class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
The default constructor.
- TPTGUC - Class in edu.isi.pegasus.planner.transfer.implementation
-
The implementation that is used to create transfer jobs that callout to
the new globus-url-copy client, that support multiple file transfers
- TPTGUC(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.TPTGUC
-
The overloaded constructor, that is called by the Factory to load the
class.
- TRACE_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
The level value, to indicate a DEBUG message.
- TRACE_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default
-
The type value to indicate a DEBUG message.
- trackInTransientRC(Job) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Tracks the files created by a job in the Transient Replica Catalog.
- trackInTransientRC(String, String, String) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Inserts an entry into the Transient RC.
- trackInTransientRC(String, String, String, boolean) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Inserts an entry into the Transient RC.
- Transfer - Class in edu.isi.pegasus.planner.transfer.implementation
-
The implementation that creates transfer jobs referring to the python based
transfer script distributed with Pegasus since version 3.0
- Transfer(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
The overloaded constructor, that is called by the Factory to load the
class.
- Transfer - Class in edu.isi.pegasus.planner.transfer.sls
-
This uses the transfer executable distributed with Pegasus to do the
second level staging.
- Transfer() - Constructor for class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The default constructor.
- TRANSFER_ARGUMENTS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key, that when associated with transfer jobs
determines the arguments with which the transfer executable is invoked.
- TRANSFER_EXECUTABLE_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
- TRANSFER_EXECUTABLE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that specifies transfer of executable
- TRANSFER_IP_FILES_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that specifies transfer of input files.
- TRANSFER_MANDATORY - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The mode where the transfer for this file to the pool
is constructed and the transfer job fails if the transfer fails.
- TRANSFER_NOT - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The mode where the transfer for this file is not constructed.
- TRANSFER_OP_FILES_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that specifies transfer of input files.
- TRANSFER_OPTIONAL - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The mode where the transfer for this file to the pool is constructed,
but the transfer job should not fail if the transfer fails.
- TRANSFER_PROXY_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key if associated with a job, results in an explicit
transfer of the proxy from the submit host to the remote site, instead of
banking upon CondorG to transfer the proxy.
- TRANSFER_UNIVERSE - Static variable in class edu.isi.pegasus.planner.refiner.Engine
-
- TRANSFER_UNIVERSE - Static variable in interface edu.isi.pegasus.planner.transfer.Implementation
-
The universe that applies for the transfer jobs.
- TransferEngine - Class in edu.isi.pegasus.planner.refiner
-
The transfer engine, which on the basis of the pools on which the jobs are to
run, adds nodes to transfer the data products.
- TransferEngine(ADag, PegasusBag, List<Job>, List<Job>) - Constructor for class edu.isi.pegasus.planner.refiner.TransferEngine
-
Overloaded constructor.
- TransferImplementationFactoryException - Exception in edu.isi.pegasus.planner.transfer.implementation
-
Class to notify of failures while instantiating Transfer Implementations.
- TransferImplementationFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.transfer.implementation.TransferImplementationFactoryException
-
Constructs a TransferImplementationFactoryException
with no detail
message.
- TransferImplementationFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.transfer.implementation.TransferImplementationFactoryException
-
Constructs a TransferImplementationFactoryException
with the specified detailed
message.
- TransferImplementationFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.transfer.implementation.TransferImplementationFactoryException
-
Constructs a TransferImplementationFactoryException
with the
specified detailed message and a cause.
- TransferImplementationFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.transfer.implementation.TransferImplementationFactoryException
-
Constructs a TransferImplementationFactoryException
with the
specified detailed message and a cause.
- transferImplementationTable() - Static method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Singleton access to the transfer implementation table.
- transferInRange(int) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns whether the transfer value for the mode is in range or not.
- TransferJob - Class in edu.isi.pegasus.planner.classes
-
This is a data class that stores the contents of the transfer job that
transfers the data.
- TransferJob() - Constructor for class edu.isi.pegasus.planner.classes.TransferJob
-
The default constructor.
- TransferJob(Job) - Constructor for class edu.isi.pegasus.planner.classes.TransferJob
-
The overloaded construct that constructs a GRMS job by wrapping around
the Job
job.
- transferOutput(GraphNode) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
Returns whether a user wants output transferred for a node or not.
- TransferRefinerFactoryException - Exception in edu.isi.pegasus.planner.transfer.refiner
-
Class to notify of failures while instantiating Transfer Refiners.
- TransferRefinerFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.transfer.refiner.TransferRefinerFactoryException
-
Constructs a TransferRefinerFactoryException
with no detail
message.
- TransferRefinerFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.transfer.refiner.TransferRefinerFactoryException
-
Constructs a TransferRefinerFactoryException
with the specified detailed
message.
- TransferRefinerFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.transfer.refiner.TransferRefinerFactoryException
-
Constructs a TransferRefinerFactoryException
with the
specified detailed message and a cause.
- TransferRefinerFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.transfer.refiner.TransferRefinerFactoryException
-
Constructs a TransferRefinerFactoryException
with the
specified detailed message and a cause.
- transferRefinerTable() - Static method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Singleton access to the transfer refiner table.
- transferWorkerPackage() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
It specifies if the worker package needs to be staged to the remote site
or not.
- Transformation - Class in edu.isi.pegasus.planner.dax
-
This Object is used to create a complex Transformation.
- Transformation(String) - Constructor for class edu.isi.pegasus.planner.dax.Transformation
-
Create a new Transformation object
- Transformation(Transformation) - Constructor for class edu.isi.pegasus.planner.dax.Transformation
-
Copy Constructor
- Transformation(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Transformation
-
Create a new Transformation Object
- TRANSFORMATION - Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
token value for the reserved word "tr".
- TRANSFORMATION_CATALOG - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The constant to be passed to the accessor functions to get or set the
handle to the transformation catalog.
- TRANSFORMATION_MAPPER - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The constant to be passed to the accessor functions to get or set the
handle to the Transformation Mapper.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The logical name of kickstart
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The name of the underlying transformation that is queried for in the
Transformation Catalog.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The logical name of the transformation that creates directories on the
remote execution pools.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The logical name of the transformation that creates directories on the
remote execution pools.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The logical name of the worker package
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The logical name of the transformation that removes directories on the
remote execution pools.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
The name of the underlying transformation that is queried for in the
Transformation Catalog.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
The name of the underlying transformation that is queried for in the
Transformation Catalog.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
The name of the underlying transformation that is queried for in the
Transformation Catalog.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
The name of the underlying transformation that is queried for in the
Transformation Catalog.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The name of the underlying transformation that is queried for in the
Transformation Catalog.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The transformation namespace for the cluster jobs.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The transformation namespace for the kickstart
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The transformation namespace for the job.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The transformation namespace for the create dir jobs.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The transformation namespace for the create dir jobs.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The transformation namespace for the worker package
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The transformation namespace for the create dir jobs.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
The transformation namespace for the transfer job.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
The transformation namespace for the transfer job.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
The transformation namespace for the transfer job.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
The transformation namespace for the transfer job.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The transformation namespace for the transfer job.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The version number for the derivations for cluster jobs
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The version number for kickstart.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The version number for the job.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The version number for the derivations for create dir jobs.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The version number for the derivations for create dir jobs.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The version number for the worker package.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The version number for the derivations for create dir jobs.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
The version number for the transfer job.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
The version number for the transfer job.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
The version number for the transfer job.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
The version number for the transfer job.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The version number for the transfer job.
- TransformationCatalog - Interface in edu.isi.pegasus.planner.catalog
-
This class is an interface to the various TxCatalog implementations that Pegasus will use.
- TransformationCatalogEntry - Class in edu.isi.pegasus.planner.catalog.transformation
-
An object of this class corresponds to a
tuple in the Transformation Catalog.
- TransformationCatalogEntry() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The basic constructor
- TransformationCatalogEntry(String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Optimized Constructor
- TransformationCatalogEntry(String, String, String, String, String, TCType, List, VDSSysInfo) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Optimized Constructor
- TransformationCatalogEntry(String, String, String, String, String, TCType, Profiles, SysInfo) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Overloaded constructor.
- TransformationCatalogReservedWord - Class in edu.isi.pegasus.planner.parser.tokens
-
Class to capture reserved words for the textual format of Transformation
Catalog
- TransformationCatalogReservedWord(int) - Constructor for class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
Initializes an instance of a reserved word token.
- TransformationCatalogTextParser - Class in edu.isi.pegasus.planner.parser
-
Parses the input stream and generates the TransformationStore as output.
- TransformationCatalogTextParser(Reader, LogManager) - Constructor for class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Initializes the parser with an input stream to read from.
- TransformationCatalogTextScanner - Class in edu.isi.pegasus.planner.parser
-
Implements the scanner for reserved words and other tokens that are
generated from the input stream for the Transformation Catalog.
- TransformationCatalogTextScanner(Reader) - Constructor for class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner
-
Starts to scan the given stream.
- TransformationFactory - Class in edu.isi.pegasus.planner.catalog.transformation
-
A factory class to load the appropriate implementation of Transformation
Catalog as specified by properties.
- TransformationFactory() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.TransformationFactory
-
- TransformationFactoryException - Exception in edu.isi.pegasus.planner.catalog.transformation
-
Class to notify of failures while instantiating Transformation Catalog
implementations.
- TransformationFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.catalog.transformation.TransformationFactoryException
-
Constructs a TransformationFactoryException
with no detail
message.
- TransformationFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.catalog.transformation.TransformationFactoryException
-
Constructs a TransformationFactoryException
with the specified detailed
message.
- TransformationFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.transformation.TransformationFactoryException
-
Constructs a TransformationFactoryException
with the
specified detailed message and a cause.
- TransformationFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.transformation.TransformationFactoryException
-
Constructs a TransformationFactoryException
with the
specified detailed message and a cause.
- TransformationSelector - Class in edu.isi.pegasus.planner.selector
-
- TransformationSelector() - Constructor for class edu.isi.pegasus.planner.selector.TransformationSelector
-
- TransformationStore - Class in edu.isi.pegasus.planner.catalog.transformation.classes
-
A container data class that is used to store transformations.
- TransformationStore() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
The default constructor.
- TRANSIENT_OPTIONAL_FLAG - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The index of the flags field which when set indicates that the file
is to be considered optional.
- TRANSIENT_REGISTRATION_FLAG - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The index of the flags field which when set indicates that the file is
not to be registered in the RLS/ RC.
- TRANSIENT_REPLICA_CATALOG - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The constant to be passed to the accessor functions to get or set the
handle to the transient replica catalog
- TRANSIENT_REPLICA_CATALOG_IMPLEMENTER - Static variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The name of the Replica Catalog Implementer that serves as the source for
cache files.
- TRANSIENT_REPLICA_CATALOG_KEY - Static variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The name of the source key for Replica Catalog Implementer that serves as
cache
- treatCacheAsRC() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether to treat the entries in the cache
files as a replica catalog or not.
- trigger - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
-
- TRUE - Static variable in class edu.isi.pegasus.common.util.Boolean
-
The character representation of a true
value.
- Type - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
-
- type - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
-
- type - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The type of transformation.
- type - Variable in class edu.isi.pegasus.planner.client.TCClient
-
- TYPE - Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
token value for the reserver word "osversion".
- TYPE_DESCRIPTION_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The attribute key for type description
- TYPE_KEY - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
The property key that designates the type of replica catalog to connect
to.
- TYPE_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The attribute key for task type
- TYPE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that denotes the type of the job.
- TYPE_SETUP - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
The constant designating the implementation to be loaded for setup tx jobs.
- TYPE_STAGE_IN - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
The constant designating the implementation be loaded for stage in jobs.
- TYPE_STAGE_INTER - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
The constant designating the implementation be loaded for inter pool jobs.
- TYPE_STAGE_OUT - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
The constant designating the implementation be loaded for stage out jobs.
- TYPE_SYMLINK_STAGE_IN - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
The constant designating the implementation to be loaded for symbolic tx jobs.
- typeInRange(int) - Static method in class edu.isi.pegasus.planner.classes.Job
-
Returns whether the job type value for the job is in range or not.
- typeInRange(int) - Method in class edu.isi.pegasus.planner.visualize.JobMeasurements
-
Returns a boolean indicating whether the event type is in range of not.
- typeInRange(int) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace
-
Returns a boolean indicating whether the event type is in range of not.
- typeNeedsCleanUp(int) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Checks to see which job types are required to be looked at for cleanup.
- typeRecursive() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns whether the job is recursive or not.
- typeStageOut(int) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Checks to see if job type is a stageout job type.
- typeToString() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the type associated with the logical file.
- typeValid(int) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns whether the type of file value is valid or not.