sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on build01.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ librostlab-blast 1.0.0-2 (armhf) 05 May 2012 17:28 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: librostlab-blast Version: 1.0.0-2 Source Version: 1.0.0-2 Distribution: testing Architecture: armhf I: NOTICE: Log filtering will replace 'build/librostlab-blast-fHO4k1/librostlab-blast-1.0.0' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/librostlab-blast-fHO4k1' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-f0387c49-c2fa-4891-9e6a-006b6f4654a1' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Get:1 http://repo.raspbian.lan testing InRelease [3588 B] Get:2 http://repo.raspbian.lan testing/main Sources [5927 kB] Get:3 http://repo.raspbian.lan testing/main armhf Packages [4853 kB] Ign http://repo.raspbian.lan testing/main TranslationIndex Ign http://repo.raspbian.lan testing/main Translation-en Fetched 10.8 MB in 23s (452 kB/s) Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'librostlab-blast' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/rostlab/librostlab-blast/trunk/ Need to get 497 kB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main librostlab-blast 1.0.0-2 (dsc) [2381 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main librostlab-blast 1.0.0-2 (tar) [491 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main librostlab-blast 1.0.0-2 (diff) [3187 B] Fetched 497 kB in 0s (6081 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-we7WEc/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 3 not upgraded. Need to get 0 B/706 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10678 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), autotools-dev, bison, doxygen, flex, graphviz, latex-xcolor, librostlab3-dev, texlive-fonts-recommended, texlive-latex-extra Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), autotools-dev, bison, doxygen, flex, graphviz, latex-xcolor, librostlab3-dev, texlive-fonts-recommended, texlive-latex-extra dpkg-deb: building package `sbuild-build-depends-librostlab-blast-dummy' in `/«BUILDDIR»/resolver-H5RE3n/apt_archive/sbuild-build-depends-librostlab-blast-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install librostlab-blast build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autotools-dev bison bsdmainutils debhelper doxygen ed file flex fontconfig fontconfig-config gettext gettext-base graphviz groff-base html2text intltool-debian latex-xcolor libbison-dev libcairo2 libcdt4 libcgraph5 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgd2-noxpm libglib2.0-0 libgraph4 libgraphite3 libgvc5 libgvpr1 libice6 libjpeg8 libkpathsea6 liblcms1 libmagic1 libopenjpeg2 libpango1.0-0 libpaper-utils libpaper1 libpathplan4 libpcre3 libpipeline1 libpixman-1-0 libpng12-0 libpoppler13 libptexenc1 librostlab3 librostlab3-dev libsm6 libthai-data libthai0 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml2 libxmu6 libxpm4 libxrender1 libxt6 luatex m4 man-db mime-support po-debconf preview-latex-style tex-common texlive-base texlive-binaries texlive-common texlive-doc-base texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ttf-dejavu-core ttf-marvosym x11-common Suggested packages: bison-doc wamerican wordlist whois vacation dh-make doxygen-doc doxygen-gui defoma gettext-doc gsfonts graphviz-doc groff libgd-tools liblcms-utils ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp librostlab-doc less www-browser libmail-box-perl perl-tk xpdf-reader pdf-viewer ghostscript gv postscript-viewer libfile-which-perl dot2tex Recommended packages: doxygen-latex curl wget lynx-cur autopoint ttf-liberation libglib2.0-data shared-mime-info poppler-data xml-core texlive-luatex libmail-sendmail-perl lmodern python ruby wish texlive-fonts-recommended-doc tex-gyre tipa texlive-latex-base-doc texlive-latex-extra-doc texpower texlive-latex-recommended-doc prosper latex-beamer texlive-pictures-doc pgf The following NEW packages will be installed: autotools-dev bison bsdmainutils debhelper doxygen ed file flex fontconfig fontconfig-config gettext gettext-base graphviz groff-base html2text intltool-debian latex-xcolor libbison-dev libcairo2 libcdt4 libcgraph5 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgd2-noxpm libglib2.0-0 libgraph4 libgraphite3 libgvc5 libgvpr1 libice6 libjpeg8 libkpathsea6 liblcms1 libmagic1 libopenjpeg2 libpango1.0-0 libpaper-utils libpaper1 libpathplan4 libpcre3 libpipeline1 libpixman-1-0 libpng12-0 libpoppler13 libptexenc1 librostlab3 librostlab3-dev libsm6 libthai-data libthai0 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml2 libxmu6 libxpm4 libxrender1 libxt6 luatex m4 man-db mime-support po-debconf preview-latex-style sbuild-build-depends-librostlab-blast-dummy tex-common texlive-base texlive-binaries texlive-common texlive-doc-base texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ttf-dejavu-core ttf-marvosym x11-common 0 upgraded, 91 newly installed, 0 to remove and 3 not upgraded. Need to get 1645 kB/90.6 MB of archives. After this operation, 223 MB of additional disk space will be used. Get:1 http://repo.raspbian.lan/raspbian/ testing/main libcdt4 armhf 2.26.3-10+rpi1 [58.3 kB] Get:2 http://repo.raspbian.lan/raspbian/ testing/main libcgraph5 armhf 2.26.3-10+rpi1 [80.6 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main libgd2-noxpm armhf 2.0.36~rc1~dfsg-6 [220 kB] Get:4 http://repo.raspbian.lan/raspbian/ testing/main libgraph4 armhf 2.26.3-10+rpi1 [69.9 kB] Get:5 http://repo.raspbian.lan/raspbian/ testing/main libpathplan4 armhf 2.26.3-10+rpi1 [63.4 kB] Get:6 http://repo.raspbian.lan/raspbian/ testing/main libxdot4 armhf 2.26.3-10+rpi1 [53.5 kB] Get:7 http://repo.raspbian.lan/raspbian/ testing/main libgvc5 armhf 2.26.3-10+rpi1 [496 kB] Get:8 http://repo.raspbian.lan/raspbian/ testing/main libgvpr1 armhf 2.26.3-10+rpi1 [233 kB] Get:9 http://repo.raspbian.lan/raspbian/ testing/main graphviz armhf 2.26.3-10+rpi1 [351 kB] Get:10 http://repo.raspbian.lan/raspbian/ testing/main librostlab3 armhf 1.0.20-1 [5676 B] Get:11 http://repo.raspbian.lan/raspbian/ testing/main librostlab3-dev armhf 1.0.20-1 [13.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1645 kB in 0s (7066 kB/s) Selecting previously unselected package libpcre3:armhf. (Reading database ... 10678 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-4_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.7.8.dfsg-9_armhf.deb) ... Selecting previously unselected package m4. Unpacking m4 (from .../archives/m4_1.4.16-2_armhf.deb) ... Selecting previously unselected package flex. Unpacking flex (from .../flex_2.5.35-10_armhf.deb) ... Selecting previously unselected package libexpat1:armhf. Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-1_armhf.deb) ... Selecting previously unselected package libfreetype6:armhf. Unpacking libfreetype6:armhf (from .../libfreetype6_2.4.9-1_armhf.deb) ... 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Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libxml2:armhf (2.7.8.dfsg-9) ... Setting up m4 (1.4.16-2) ... Setting up flex (2.5.35-10) ... Setting up libexpat1:armhf (2.1.0-1) ... Setting up libfreetype6:armhf (2.4.9-1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.8.0-3.1) ... Setting up libfontconfig1:armhf (2.8.0-3.1) ... Setting up libpixman-1-0:armhf (0.24.4-1) ... Setting up libpng12-0:armhf (1.2.49-1) ... Setting up libxau6:armhf (1:1.0.7-1) ... Setting up libxdmcp6:armhf (1:1.1.1-1) ... Setting up libxcb1:armhf (1.8.1-1) ... Setting up libx11-data (2:1.4.4-4) ... Setting up libx11-6:armhf (2:1.4.4-4) ... Setting up libxcb-render0:armhf (1.8.1-1) ... Setting up libxcb-shm0:armhf (1.8.1-1) ... Setting up libxrender1:armhf (1:0.9.6-2) ... Setting up libcairo2:armhf (1.10.2-7) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.0-4) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libdatrie1:armhf (0.2.5-3) ... Setting up x11-common (1:7.6+12) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:armhf (2:1.0.8-2) ... Setting up libjpeg8:armhf (8d-1) ... Setting up libthai-data (0.1.17-1) ... Setting up libthai0:armhf (0.1.17-1) ... Setting up libxft2:armhf (2.2.0-3) ... Setting up fontconfig (2.8.0-3.1) ... Cleaning up old fontconfig caches... done. Regenerating fonts cache... done. Setting up libpango1.0-0:armhf (1.29.4-3) ... Setting up libsm6:armhf (2:1.2.1-2) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up libxext6:armhf (2:1.3.1-2) ... Setting up libxt6:armhf (1:1.1.3-1) ... Setting up libxmu6:armhf (2:1.1.1-1) ... Setting up libxpm4:armhf (1:3.5.10-1) ... Setting up libxaw7:armhf (2:1.0.10-2) ... Setting up bsdmainutils (9.0.1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-5+rpi1) ... Setting up mime-support (3.52-1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up autotools-dev (20120210.1) ... Setting up libbison-dev:armhf (1:2.5.dfsg-2.1) ... Setting up bison (1:2.5.dfsg-2.1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5+rpi1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120419) ... Setting up doxygen (1.7.6.1-2.1) ... Setting up ed (1.6-1) ... Setting up libcdt4 (2.26.3-10+rpi1) ... Setting up libcgraph5 (2.26.3-10+rpi1) ... Setting up libgd2-noxpm (2.0.36~rc1~dfsg-6) ... Setting up libgraph4 (2.26.3-10+rpi1) ... Setting up libpathplan4 (2.26.3-10+rpi1) ... Setting up libxdot4 (2.26.3-10+rpi1) ... Setting up libgvc5 (2.26.3-10+rpi1) ... Setting up libgvpr1 (2.26.3-10+rpi1) ... Setting up graphviz (2.26.3-10+rpi1) ... Setting up libgraphite3 (1:2.3.1-0.2) ... Setting up libkpathsea6 (2011.20120410-1) ... Setting up liblcms1 (1.19.dfsg-1) ... Setting up libopenjpeg2 (1.3+dfsg-4) ... Setting up libpoppler13 (0.16.7-3) ... Setting up libptexenc1 (2011.20120410-1) ... Setting up tex-common (3.10) ... Running mktexlsr. This may take some time... done. texlive-base is not ready, delaying updmap-sys call texlive-base is not ready, skipping fmtutil-sys --all call Setting up texlive-common (2011.20120424-1) ... Setting up texlive-binaries (2011.20120410-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode. update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode. Building format(s) --refresh. This may take some time... done. Setting up texlive-doc-base (2011.20120424-1) ... Setting up luatex (0.70.1-3) ... texlive-base is not ready, cannot create formats Setting up libpaper1 (1.1.24+nmu1) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.24+nmu1) ... Setting up librostlab3 (1.0.20-1) ... Setting up librostlab3-dev (1.0.20-1) ... Setting up preview-latex-style (11.86-10) ... Setting up ttf-marvosym (0.1+dfsg-2) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Setting up texlive-base (2011.20120424-1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Running mktexlsr. This may take some time... done. Building format(s) --all. This may take some time... done. Processing triggers for tex-common ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-fonts-recommended (2011.20120424-1) ... Setting up texlive-pictures (2011.20120424-1) ... Setting up texlive-latex-base (2011.20120424-1) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-recommended (2011.20120424-1) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Setting up latex-xcolor (2.11-1) ... Setting up texlive-latex-extra (2011.20120424-1) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up sbuild-build-depends-librostlab-blast-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1.1+rpi2 gcc-4.6_4.6.3-1.1+rpi2 libc6-dev_2.13-30 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 linux-libc-dev_3.2.12-1 Package versions: apt_0.8.15.10 autotools-dev_20120210.1 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bison_1:2.5.dfsg-2.1 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1.1+rpi2 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120419 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 doxygen_1.7.6.1-2.1 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 ed_1.6-1 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 flex_2.5.35-10 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1.1+rpi2 gcc_4:4.6.2-4 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-1.1+rpi2 gcc-4.6-base_4.6.3-1.1+rpi2 gcc-4.7-base_4.7.0-1.1+rpi gettext_0.18.1.1-5+rpi1 gettext-base_0.18.1.1-5+rpi1 gnupg_1.4.12-4 gpgv_1.4.12-4 graphviz_2.26.3-10+rpi1 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 latex-xcolor_2.11-1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libbison-dev_1:2.5.dfsg-2.1 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-30 libc-dev-bin_2.13-30 libc6_2.13-30 libc6-dev_2.13-30 libcairo2_1.10.2-7 libcdt4_2.26.3-10+rpi1 libcgraph5_2.26.3-10+rpi1 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libexpat1_2.1.0-1 libffi5_3.0.10-3+b3 libfile-fcntllock-perl_0.14-1 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1.1+rpi libgd2-noxpm_2.0.36~rc1~dfsg-6 libgdbm3_1.8.3-10 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-1.1+rpi libgraph4_2.26.3-10+rpi1 libgraphite3_1:2.3.1-0.2 libgvc5_2.26.3-10+rpi1 libgvpr1_2.26.3-10+rpi1 libice6_2:1.0.8-2 libjpeg8_8d-1 libkpathsea6_2011.20120410-1 liblcms1_1.19.dfsg-1 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncursesw5_5.9-6 libopenjpeg2_1.3+dfsg-4 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-3 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpathplan4_2.26.3-10+rpi1 libpcre3_1:8.30-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.49-1 libpoppler13_0.16.7-3 libptexenc1_2011.20120410-1 libreadline6_6.2-8 librostlab3_1.0.20-1 librostlab3-dev_1.0.20-1 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-7 libsm6_2:1.2.1-2 libss2_1.42.2-2 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtimedate-perl_1.2000-1 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.7-1 libxaw7_2:1.0.10-2 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.1-1 libxdot4_2.26.3-10+rpi1 libxext6_2:1.3.1-2 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-9 libxmu6_2:1.1.1-1 libxpm4_1:3.5.10-1 libxrender1_1:0.9.6-2 libxt6_1:1.1.3-1 linux-libc-dev_3.2.12-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 luatex_0.70.1-3 m4_1.4.16-2 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mime-support_3.52-1 mount_2.20.1-4 multiarch-support_2.13-30 ncurses-base_5.9-6 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 preview-latex-style_11.86-10 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-librostlab-blast-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tex-common_3.10 texlive-base_2011.20120424-1 texlive-binaries_2011.20120410-1 texlive-common_2011.20120424-1 texlive-doc-base_2011.20120424-1 texlive-fonts-recommended_2011.20120424-1 texlive-latex-base_2011.20120424-1 texlive-latex-extra_2011.20120424-1 texlive-latex-recommended_2011.20120424-1 texlive-pictures_2011.20120424-1 ttf-dejavu-core_2.33-2 ttf-marvosym_0.1+dfsg-2 tzdata_2012b-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 x11-common_1:7.6+12 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.6.dfsg-2 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Wed Apr 4 09:56:03 2012 UTC using RSA key ID 9A0C52FA gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./librostlab-blast_1.0.0-2.dsc dpkg-source: info: extracting librostlab-blast in librostlab-blast-1.0.0 dpkg-source: info: unpacking librostlab-blast_1.0.0.orig.tar.gz dpkg-source: info: unpacking librostlab-blast_1.0.0-2.debian.tar.gz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-f0387c49-c2fa-4891-9e6a-006b6f4654a1 SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package librostlab-blast dpkg-buildpackage: source version 1.0.0-2 dpkg-source --before-build librostlab-blast-1.0.0 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh clean --parallel dh_testdir -O--parallel dh_auto_clean -O--parallel dh_clean -O--parallel rm -f debian/librostlab-blast0.substvars rm -f debian/librostlab-blast0.*.debhelper rm -rf debian/librostlab-blast0/ rm -f debian/librostlab-blast0-dev.substvars rm -f debian/librostlab-blast0-dev.*.debhelper rm -rf debian/librostlab-blast0-dev/ rm -f debian/librostlab-blast-doc.substvars rm -f debian/librostlab-blast-doc.*.debhelper rm -rf debian/librostlab-blast-doc/ rm -f debian/librostlab-blast0-dbg.substvars rm -f debian/librostlab-blast0-dbg.*.debhelper rm -rf debian/librostlab-blast0-dbg/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} \; \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \) rm -f *-stamp debian/rules build-arch dh build-arch --parallel dh_testdir -a -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory `/«PKGBUILDDIR»' dh_auto_configure --parallel -- --enable-doxygen-dot --enable-doxygen-pdf ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libexecdir=\${prefix}/lib/librostlab-blast --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 805306365 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) none checking how to run the C++ preprocessor... g++ -E checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for bison... bison -y checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking rostlab/aux_functions.h usability... yes checking rostlab/aux_functions.h presence... yes checking for rostlab/aux_functions.h... yes checking rostlab/rostlab_stdexcept.h usability... yes checking rostlab/rostlab_stdexcept.h presence... yes checking for rostlab/rostlab_stdexcept.h... yes checking for doxygen... /usr/bin/doxygen checking for perl... /usr/bin/perl checking for dot... /usr/bin/dot checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for egrep... /bin/egrep configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/Doxyfile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory `/«PKGBUILDDIR»' debian/rules override_dh_auto_build make[1]: Entering directory `/«PKGBUILDDIR»' dh_auto_build --parallel make -j1 make[2]: Entering directory `/«PKGBUILDDIR»' make all-recursive make[3]: Entering directory `/«PKGBUILDDIR»' Making all in lib make[4]: Entering directory `/«PKGBUILDDIR»/lib' /bin/bash ../ylwrap blast-parser-scanner.lpp lex.yy.c blast-parser-scanner.cpp -- flex make all-am make[5]: Entering directory `/«PKGBUILDDIR»/lib' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wall -g -O2 -c -o librostlab_blast_la-blast-parser-driver.lo `test -f 'blast-parser-driver.cpp' || echo './'`blast-parser-driver.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wall -g -O2 -c blast-parser-driver.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-driver.o In file included from ./rostlab/blast-parser-location.h:44:0, from rostlab/blast-parser-parser.h:76, from rostlab/blast-parser-driver.h:26, from blast-parser-driver.cpp:19: rostlab/blast-parser-position.h: In function 'bool rostlab::blast::operator==(const rostlab::blast::position&, const rostlab::blast::position&)': rostlab/blast-parser-position.h:135:69: warning: suggest parentheses around '&&' within '||' [-Wparentheses] libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wall -g -O2 -c blast-parser-driver.cpp -o librostlab_blast_la-blast-parser-driver.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wall -g -O2 -c -o librostlab_blast_la-blast-parser-parser.lo `test -f 'blast-parser-parser.cpp' || echo './'`blast-parser-parser.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wall -g -O2 -c blast-parser-parser.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-parser.o In file included from ./rostlab/blast-parser-location.h:44:0, from rostlab/blast-parser-parser.h:76, from blast-parser-parser.cpp:43: rostlab/blast-parser-position.h: In function 'bool rostlab::blast::operator==(const rostlab::blast::position&, const rostlab::blast::position&)': rostlab/blast-parser-position.h:135:69: warning: suggest parentheses around '&&' within '||' [-Wparentheses] libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wall -g -O2 -c blast-parser-parser.cpp -o librostlab_blast_la-blast-parser-parser.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wall -g -O2 -c -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo `test -f 'librostlab_blast_la-blast-parser-scanner.cpp' || echo './'`librostlab_blast_la-blast-parser-scanner.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wall -g -O2 -c librostlab_blast_la-blast-parser-scanner.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o In file included from ./rostlab/blast-parser-location.h:44:0, from rostlab/blast-parser-parser.h:76, from rostlab/blast-parser-driver.h:26, from blast-parser-scanner.lpp:22: rostlab/blast-parser-position.h: In function 'bool rostlab::blast::operator==(const rostlab::blast::position&, const rostlab::blast::position&)': rostlab/blast-parser-position.h:135:69: warning: suggest parentheses around '&&' within '||' [-Wparentheses] libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wall -g -O2 -c librostlab_blast_la-blast-parser-scanner.cpp -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -Wall -g -O2 -version-info 0:0:0 -Wall -o librostlab-blast.la -rpath /usr/lib librostlab_blast_la-blast-parser-driver.lo librostlab_blast_la-blast-parser-parser.lo librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo libtool: link: g++ -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/4.6/crtbeginS.o 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PROJECT='librostlab-blast' DOCDIR='../doxygen-doc' VERSION='1.0.0' PERL_PATH='/usr/bin/perl' HAVE_DOT='YES' DOT_PATH='/usr/bin' GENERATE_MAN='NO' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='YES' /usr/bin/doxygen ./Doxyfile Notice: Output directory `../doxygen-doc' does not exist. I have created it for you. error: Tag file `/usr/share/doc/librostlab-doc/librostlab.tag' does not exist or is not a file. Skipping it... /«PKGBUILDDIR»/lib/rostlab/blast-parser-location.h:35: warning: the name `location.hh' supplied as the second argument in the \file statement is not an input file /«PKGBUILDDIR»/lib/rostlab/blast-parser-position.h:35: warning: the name `position.hh' supplied as the second argument in the \file statement is not an input file Searching for include files... Searching for example files... Searching for files in directory /«PKGBUILDDIR»/examples Searching for images... Searching for dot files... 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Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Creating members for template instances... Computing class relations... Add enum values to enums... Searching for member function documentation... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file rostlab/blast-parser-driver.h... Generating code for file rostlab/blast-parser-location.h... Generating code for file rostlab/blast-parser-parser.h... Generating code for file rostlab/blast-parser-position.h... Generating code for file rostlab/blast-parser-stack.h... Generating code for file rostlab/blast-result.h... Generating file documentation... Generating docs for file rostlab/blast-parser-driver.h... 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[27]) (./classrostlab_1_1blast_1_1parser__error.tex [28]) (./classrostlab_1_1blast_1_1position.tex [29] [30]) (./structrostlab_1_1blast_1_1result.tex [31] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 82. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sim' on input line 82. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 82. [32] [33]) (./structrostlab_1_1blast_1_1round.tex [34] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 72. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sim' on input line 72. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 72. 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(./blast-parser-driver_8h.tex Overfull \hbox (5.0pt too wide) in paragraph at lines 14--16 [] Underfull \hbox (badness 10000) in paragraph at lines 4--17 \T1/pcr/m/n/10 #include $\OML/ztmcm/m/it/10 <$\T1/pcr/m/n/10 stdio.-h$\OML/ztmc m/m/it/10 >$\OMS/ztmcm/m/n/10 ^^B \T1/pcr/m/n/10 #include $\OML/ztmcm/m/it/10 < $\T1/pcr/m/n/10 string$\OML/ztmcm/m/it/10 >$\OMS/ztmcm/m/n/10 ^^B \T1/pcr/m/n/1 0 #include $\OML/ztmcm/m/it/10 <$\T1/pcr/m/n/10 map$\OML/ztmcm/m/it/10 >$\OMS/z tmcm/m/n/10 ^^B Overfull \hbox (122.44777pt too wide) in paragraph at lines 4--17 \T1/pcr/m/n/10 #include $\OML/ztmcm/m/it/10 <$\T1/pcr/m/n/10 rostlab/rostlab-_- stdexcept.-h$\OML/ztmcm/m/it/10 >$\OMS/ztmcm/m/n/10 ^^B \T1/pcr/m/n/10 #include "rostlab/blast-parser-parser.- [43 <./blast-parser-driver_8h__incl.pdf>]) (./blast-parser-location_8h.tex Overfull \hbox (127.89554pt too wide) in paragraph at lines 4--14 \T1/pcr/m/n/10 #include $\OML/ztmcm/m/it/10 <$\T1/pcr/m/n/10 iostream$\OML/ztmc m/m/it/10 >$\OMS/ztmcm/m/n/10 ^^B \T1/pcr/m/n/10 #include $\OML/ztmcm/m/it/10 < $\T1/pcr/m/n/10 string$\OML/ztmcm/m/it/10 >$\OMS/ztmcm/m/n/10 ^^B \T1/pcr/m/n/1 0 #include "rostlab/blast-parser-position.- [44] [45 <./blast-parser-location_8h__ incl.pdf> <./blast-parser-location_8h__dep__incl.pdf>] Underfull \hbox (badness 1000) in paragraph at lines 40--41 []\T1/phv/m/n/10 const lo-ca-tion [][]rostlab-::blast-::operator+[][] (const lo -ca-tion &be-gin, un-signed int ) (./blast-parser-parser_8h.tex Overfull \hbox (5.0pt too wide) in paragraph at lines 13--15 [] Underfull \hbox (badness 10000) in paragraph at lines 4--16 \T1/pcr/m/n/10 #include $\OML/ztmcm/m/it/10 <$\T1/pcr/m/n/10 string$\OML/ztmcm/ m/it/10 >$\OMS/ztmcm/m/n/10 ^^B \T1/pcr/m/n/10 #include "rostlab/blast-result.- h"\OMS/ztmcm/m/n/10 ^^B Underfull \hbox (badness 4940) in paragraph at lines 4--16 \T1/pcr/m/n/10 h"\OMS/ztmcm/m/n/10 ^^B \T1/pcr/m/n/10 #include "rostlab/blast-p arser-location.-h"\OMS/ztmcm/m/n/10 ^^B \T1/phv/m/n/10 -Include de-pen- [46 <./blast-parser-parser_8h__incl .pdf>] [47 <./blast-parser-parser_8h__dep__incl.pdf>]) (./blast-parser-position_8h.tex [48 <./blast-parser-position_8h__ incl.pdf>] [49 <./blast-parser-position_8h__dep__incl.pdf>]) (./blast-parser-stack_8h.tex Underfull \vbox (badness 10000) has occurred while \output is active [50 <./bla st-parser-stack_8h__incl.pdf>]) (./blast-result_8h.tex Overfull \hbox (5.0pt too wide) in paragraph at lines 13--15 [] Underfull \hbox (badness 10000) in paragraph at lines 4--16 \T1/pcr/m/n/10 #include $\OML/ztmcm/m/it/10 <$\T1/pcr/m/n/10 vector$\OML/ztmcm/ m/it/10 >$\OMS/ztmcm/m/n/10 ^^B \T1/pcr/m/n/10 #include $\OML/ztmcm/m/it/10 <$\ T1/pcr/m/n/10 rostlab/aux-_-functions.-h$\OML/ztmcm/m/it/10 >$\OMS/ztmcm/m/n/10 ^^B Underfull \vbox (badness 5077) has occurred while \output is active [51 <./blas t-parser-stack_8h__dep__incl.pdf>] [52 <./blast-result_8h__incl.pdf> <./blast -result_8h__dep__incl.pdf>]) No file refman.ind. [53] (./refman.aux) Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Font Warning: Some font shapes were not available, defaults substituted. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (57 pages, 264115 bytes). Transcript written on refman.log. This is makeindex, version 2.15 [TeX Live 2012/dev] (kpathsea + Thai support). Scanning input file refman.idx....done (354 entries accepted, 10 rejected). Sorting entries......done (3275 comparisons). Generating output file refman.ind....done (713 lines written, 0 warnings). Output written in refman.ind. Transcript written in refman.ilg. This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2012/dev/Debian) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2011/06/27> Babel and hyphenation patterns for english, dumylang, nohyphenation, lo aded. 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(./blast-parser-driver_8h.tex Overfull \hbox (5.0pt too wide) in paragraph at lines 14--16 [] Underfull \hbox (badness 10000) in paragraph at lines 4--17 \T1/pcr/m/n/10 #include $\OML/ztmcm/m/it/10 <$\T1/pcr/m/n/10 stdio.-h$\OML/ztmc m/m/it/10 >$\OMS/ztmcm/m/n/10 ^^B \T1/pcr/m/n/10 #include $\OML/ztmcm/m/it/10 < $\T1/pcr/m/n/10 string$\OML/ztmcm/m/it/10 >$\OMS/ztmcm/m/n/10 ^^B \T1/pcr/m/n/1 0 #include $\OML/ztmcm/m/it/10 <$\T1/pcr/m/n/10 map$\OML/ztmcm/m/it/10 >$\OMS/z tmcm/m/n/10 ^^B Overfull \hbox (122.44777pt too wide) in paragraph at lines 4--17 \T1/pcr/m/n/10 #include $\OML/ztmcm/m/it/10 <$\T1/pcr/m/n/10 rostlab/rostlab-_- stdexcept.-h$\OML/ztmcm/m/it/10 >$\OMS/ztmcm/m/n/10 ^^B \T1/pcr/m/n/10 #include "rostlab/blast-parser-parser.- [43 <./blast-parser-driver_8h__incl.pdf>]) (./blast-parser-location_8h.tex Overfull \hbox (127.89554pt too wide) in paragraph at lines 4--14 \T1/pcr/m/n/10 #include $\OML/ztmcm/m/it/10 <$\T1/pcr/m/n/10 iostream$\OML/ztmc m/m/it/10 >$\OMS/ztmcm/m/n/10 ^^B \T1/pcr/m/n/10 #include $\OML/ztmcm/m/it/10 < $\T1/pcr/m/n/10 string$\OML/ztmcm/m/it/10 >$\OMS/ztmcm/m/n/10 ^^B \T1/pcr/m/n/1 0 #include "rostlab/blast-parser-position.- [44] [45 <./blast-parser-location_8h__ incl.pdf> <./blast-parser-location_8h__dep__incl.pdf>] Underfull \hbox (badness 1000) in paragraph at lines 40--41 []\T1/phv/m/n/10 const lo-ca-tion [][]rostlab-::blast-::operator+[][] (const lo -ca-tion &be-gin, un-signed int ) (./blast-parser-parser_8h.tex Overfull \hbox (5.0pt too wide) in paragraph at lines 13--15 [] Underfull \hbox (badness 10000) in paragraph at lines 4--16 \T1/pcr/m/n/10 #include $\OML/ztmcm/m/it/10 <$\T1/pcr/m/n/10 string$\OML/ztmcm/ m/it/10 >$\OMS/ztmcm/m/n/10 ^^B \T1/pcr/m/n/10 #include "rostlab/blast-result.- h"\OMS/ztmcm/m/n/10 ^^B Underfull \hbox (badness 4940) in paragraph at lines 4--16 \T1/pcr/m/n/10 h"\OMS/ztmcm/m/n/10 ^^B \T1/pcr/m/n/10 #include "rostlab/blast-p arser-location.-h"\OMS/ztmcm/m/n/10 ^^B \T1/phv/m/n/10 -Include de-pen- [46 <./blast-parser-parser_8h__incl .pdf>] [47 <./blast-parser-parser_8h__dep__incl.pdf>]) (./blast-parser-position_8h.tex [48 <./blast-parser-position_8h__ incl.pdf>] [49 <./blast-parser-position_8h__dep__incl.pdf>]) (./blast-parser-stack_8h.tex Underfull \vbox (badness 10000) has occurred while \output is active [50 <./bla st-parser-stack_8h__incl.pdf>]) (./blast-result_8h.tex Overfull \hbox (5.0pt too wide) in paragraph at lines 13--15 [] Underfull \hbox (badness 10000) in paragraph at lines 4--16 \T1/pcr/m/n/10 #include $\OML/ztmcm/m/it/10 <$\T1/pcr/m/n/10 vector$\OML/ztmcm/ m/it/10 >$\OMS/ztmcm/m/n/10 ^^B \T1/pcr/m/n/10 #include $\OML/ztmcm/m/it/10 <$\ T1/pcr/m/n/10 rostlab/aux-_-functions.-h$\OML/ztmcm/m/it/10 >$\OMS/ztmcm/m/n/10 ^^B Underfull \vbox (badness 5077) has occurred while \output is active [51 <./blas t-parser-stack_8h__dep__incl.pdf>] [52 <./blast-result_8h__incl.pdf> <./blast -result_8h__dep__incl.pdf>]) (./refman.ind [53] [54] Underfull \hbox (badness 10000) in paragraph at lines 171--173 []| \T1/phv/m/n/10 rostlab-::blast-::parser-::semantic-_-type, Underfull \hbox (badness 10000) in paragraph at lines 253--255 []| \T1/phv/m/n/10 rostlab-::blast-::parser-::semantic-_-type, [55] [56] [57] Underfull \hbox (badness 10000) in paragraph at lines 692--694 []| \T1/phv/m/n/10 rostlab-::blast-::parser-::semantic-_-type, [58] [59]) (./refman.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (69 pages, 308857 bytes). Transcript written on refman.log. make[2]: Leaving directory `/«PKGBUILDDIR»/lib' make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_test -a -O--parallel make -j1 check make[1]: Entering directory `/«PKGBUILDDIR»' Making check in lib make[2]: Entering directory `/«PKGBUILDDIR»/lib' make check-am make[3]: Entering directory `/«PKGBUILDDIR»/lib' make[3]: Nothing to be done for `check-am'. make[3]: Leaving directory `/«PKGBUILDDIR»/lib' make[2]: Leaving directory `/«PKGBUILDDIR»/lib' make[2]: Entering directory `/«PKGBUILDDIR»' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' fakeroot debian/rules binary-arch dh binary-arch --parallel dh_testroot -a -O--parallel dh_prep -a -O--parallel rm -f debian/librostlab-blast0.substvars rm -f debian/librostlab-blast0.*.debhelper rm -rf debian/librostlab-blast0/ rm -f debian/librostlab-blast0-dev.substvars rm -f debian/librostlab-blast0-dev.*.debhelper rm -rf debian/librostlab-blast0-dev/ rm -f debian/librostlab-blast0-dbg.substvars rm -f debian/librostlab-blast0-dbg.*.debhelper rm -rf debian/librostlab-blast0-dbg/ dh_installdirs -a -O--parallel install -d debian/librostlab-blast0 install -d debian/librostlab-blast0-dev install -d debian/librostlab-blast0-dbg dh_auto_install -a -O--parallel make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory `/«PKGBUILDDIR»' Making install in lib make[2]: Entering directory `/«PKGBUILDDIR»/lib' make install-am make[3]: Entering directory `/«PKGBUILDDIR»/lib' make[4]: Entering directory `/«PKGBUILDDIR»/lib' test -z "/usr/lib" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/tmp/usr/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c librostlab-blast.la '/«PKGBUILDDIR»/debian/tmp/usr/lib' libtool: install: /usr/bin/install -c .libs/librostlab-blast.so.0.0.0 /«PKGBUILDDIR»/debian/tmp/usr/lib/librostlab-blast.so.0.0.0 libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so.0 || { rm -f librostlab-blast.so.0 && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so.0; }; }) libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so || { rm -f librostlab-blast.so && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so; }; }) libtool: install: /usr/bin/install -c .libs/librostlab-blast.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/librostlab-blast.la libtool: install: /usr/bin/install -c .libs/librostlab-blast.a /«PKGBUILDDIR»/debian/tmp/usr/lib/librostlab-blast.a libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/librostlab-blast.a libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/librostlab-blast.a libtool: install: warning: remember to run `libtool --finish /usr/lib' test -z "/usr/include/rostlab" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/tmp/usr/include/rostlab" /usr/bin/install -c -m 644 rostlab/blast-parser-driver.h rostlab/blast-result.h rostlab/blast-parser-location.h rostlab/blast-parser-parser.h rostlab/blast-parser-position.h rostlab/blast-parser-stack.h '/«PKGBUILDDIR»/debian/tmp/usr/include/rostlab' make[4]: Leaving directory `/«PKGBUILDDIR»/lib' make[3]: Leaving directory `/«PKGBUILDDIR»/lib' make[2]: Leaving directory `/«PKGBUILDDIR»/lib' make[2]: Entering directory `/«PKGBUILDDIR»' make[3]: Entering directory `/«PKGBUILDDIR»' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/doc/librostlab-blast/examples" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/tmp/usr/share/doc/librostlab-blast/examples" /usr/bin/install -c -m 644 examples/converged.ali examples/parseblast.cpp '/«PKGBUILDDIR»/debian/tmp/usr/share/doc/librostlab-blast/examples' make[3]: Leaving directory `/«PKGBUILDDIR»' make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' dh_install -a -O--parallel install -d debian/librostlab-blast0//usr/lib cp -a debian/tmp/usr/lib/librostlab-blast.so.0 debian/librostlab-blast0//usr/lib/ cp -a debian/tmp/usr/lib/librostlab-blast.so.0.0.0 debian/librostlab-blast0//usr/lib/ install -d debian/librostlab-blast0-dev//usr/include cp -a debian/tmp/usr/include/rostlab debian/librostlab-blast0-dev//usr/include/ install -d debian/librostlab-blast0-dev//usr/lib cp -a debian/tmp/usr/lib/librostlab-blast.a debian/librostlab-blast0-dev//usr/lib/ cp -a debian/tmp/usr/lib/librostlab-blast.la debian/librostlab-blast0-dev//usr/lib/ cp -a debian/tmp/usr/lib/librostlab-blast.so debian/librostlab-blast0-dev//usr/lib/ dh_installdocs -a -O--parallel install -g 0 -o 0 -d debian/librostlab-blast0/usr/share/doc/librostlab-blast0 install -g 0 -o 0 -m 644 -p debian/copyright debian/librostlab-blast0/usr/share/doc/librostlab-blast0/copyright install -g 0 -o 0 -d debian/librostlab-blast0-dev/usr/share/doc/librostlab-blast0-dev install -g 0 -o 0 -m 644 -p debian/copyright debian/librostlab-blast0-dev/usr/share/doc/librostlab-blast0-dev/copyright install -g 0 -o 0 -d debian/librostlab-blast0-dbg/usr/share/doc/librostlab-blast0-dbg install -g 0 -o 0 -m 644 -p debian/copyright debian/librostlab-blast0-dbg/usr/share/doc/librostlab-blast0-dbg/copyright dh_installchangelogs -a -O--parallel install -o 0 -g 0 -p -m644 debian/changelog debian/librostlab-blast0/usr/share/doc/librostlab-blast0/changelog.Debian install -o 0 -g 0 -p -m644 ./ChangeLog debian/librostlab-blast0/usr/share/doc/librostlab-blast0/changelog install -o 0 -g 0 -p -m644 debian/changelog debian/librostlab-blast0-dev/usr/share/doc/librostlab-blast0-dev/changelog.Debian install -o 0 -g 0 -p -m644 ./ChangeLog debian/librostlab-blast0-dev/usr/share/doc/librostlab-blast0-dev/changelog install -o 0 -g 0 -p -m644 debian/changelog debian/librostlab-blast0-dbg/usr/share/doc/librostlab-blast0-dbg/changelog.Debian install -o 0 -g 0 -p -m644 ./ChangeLog debian/librostlab-blast0-dbg/usr/share/doc/librostlab-blast0-dbg/changelog dh_installexamples -a -O--parallel install -d debian/librostlab-blast0-dev/usr/share/doc/librostlab-blast0-dev/examples cp -a examples/parseblast.cpp debian/librostlab-blast0-dev/usr/share/doc/librostlab-blast0-dev/examples cp -a examples/converged.ali debian/librostlab-blast0-dev/usr/share/doc/librostlab-blast0-dev/examples dh_installman -a -O--parallel dh_installcatalogs -a -O--parallel dh_installcron -a -O--parallel dh_installdebconf -a -O--parallel install -o 0 -g 0 -d debian/librostlab-blast0/DEBIAN install -o 0 -g 0 -d debian/librostlab-blast0-dev/DEBIAN install -o 0 -g 0 -d debian/librostlab-blast0-dbg/DEBIAN dh_installemacsen -a -O--parallel dh_installifupdown -a -O--parallel dh_installinfo -a -O--parallel dh_installinit -a -O--parallel dh_installmenu -a -O--parallel dh_installmime -a -O--parallel dh_installmodules -a -O--parallel dh_installlogcheck -a -O--parallel dh_installlogrotate -a -O--parallel dh_installpam -a -O--parallel dh_installppp -a -O--parallel dh_installudev -a -O--parallel dh_installwm -a -O--parallel dh_installxfonts -a -O--parallel dh_installgsettings -a -O--parallel dh_bugfiles -a -O--parallel dh_ucf -a -O--parallel dh_lintian -a -O--parallel dh_gconf -a -O--parallel dh_icons -a -O--parallel dh_perl -a -O--parallel dh_usrlocal -a -O--parallel dh_link -a -O--parallel rm -f debian/librostlab-blast0/usr/lib/librostlab-blast.so.0 ln -sf librostlab-blast.so.0.0.0 debian/librostlab-blast0/usr/lib/librostlab-blast.so.0 rm -f debian/librostlab-blast0-dev/usr/lib/librostlab-blast.so ln -sf librostlab-blast.so.0.0.0 debian/librostlab-blast0-dev/usr/lib/librostlab-blast.so debian/rules override_dh_compress make[1]: Entering directory `/«PKGBUILDDIR»' dh_compress -Xlibrostlab-blast.tag cd debian/librostlab-blast0 chmod a-x usr/share/doc/librostlab-blast0/changelog.Debian usr/share/doc/librostlab-blast0/changelog gzip -9nf usr/share/doc/librostlab-blast0/changelog.Debian usr/share/doc/librostlab-blast0/changelog cd '/«PKGBUILDDIR»' cd debian/librostlab-blast0-dev chmod a-x usr/share/doc/librostlab-blast0-dev/changelog.Debian usr/share/doc/librostlab-blast0-dev/changelog usr/share/doc/librostlab-blast0-dev/examples/converged.ali gzip -9nf usr/share/doc/librostlab-blast0-dev/changelog.Debian usr/share/doc/librostlab-blast0-dev/changelog usr/share/doc/librostlab-blast0-dev/examples/converged.ali cd '/«PKGBUILDDIR»' cd debian/librostlab-blast0-dbg chmod a-x usr/share/doc/librostlab-blast0-dbg/changelog.Debian usr/share/doc/librostlab-blast0-dbg/changelog gzip -9nf usr/share/doc/librostlab-blast0-dbg/changelog.Debian usr/share/doc/librostlab-blast0-dbg/changelog cd '/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' dh_fixperms -a -O--parallel find debian/librostlab-blast0 -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/librostlab-blast0 ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/librostlab-blast0/usr/share/doc -type f ! -regex 'debian/librostlab-blast0/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755 find debian/librostlab-blast0/usr/share/man debian/librostlab-blast0/usr/man/ debian/librostlab-blast0/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0 -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0 -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0/usr/lib/perl5 debian/librostlab-blast0/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/librostlab-blast0/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w find debian/librostlab-blast0-dev -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/librostlab-blast0-dev ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/librostlab-blast0-dev/usr/share/doc -type f ! -regex 'debian/librostlab-blast0-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0-dev/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755 find debian/librostlab-blast0-dev/usr/share/man debian/librostlab-blast0-dev/usr/man/ debian/librostlab-blast0-dev/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0-dev -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0-dev/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0-dev/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0-dev -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0-dev/usr/lib/perl5 debian/librostlab-blast0-dev/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/librostlab-blast0-dev/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w find debian/librostlab-blast0-dbg -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/librostlab-blast0-dbg ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/librostlab-blast0-dbg/usr/share/doc -type f ! -regex 'debian/librostlab-blast0-dbg/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0-dbg/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755 find debian/librostlab-blast0-dbg/usr/share/man debian/librostlab-blast0-dbg/usr/man/ debian/librostlab-blast0-dbg/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0-dbg -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0-dbg/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0-dbg/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0-dbg -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab-blast0-dbg/usr/lib/perl5 debian/librostlab-blast0-dbg/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/librostlab-blast0-dbg/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w debian/rules override_dh_strip make[1]: Entering directory `/«PKGBUILDDIR»' dh_strip --dbg-package=librostlab-blast0-dbg install -d debian/librostlab-blast0-dbg/usr/lib/debug//usr/lib objcopy --only-keep-debug debian/librostlab-blast0/usr/lib/librostlab-blast.so.0.0.0 debian/librostlab-blast0-dbg/usr/lib/debug//usr/lib/librostlab-blast.so.0.0.0 chmod 644 debian/librostlab-blast0-dbg/usr/lib/debug//usr/lib/librostlab-blast.so.0.0.0 strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/librostlab-blast0/usr/lib/librostlab-blast.so.0.0.0 objcopy --add-gnu-debuglink debian/librostlab-blast0-dbg/usr/lib/debug//usr/lib/librostlab-blast.so.0.0.0 debian/librostlab-blast0/usr/lib/librostlab-blast.so.0.0.0 strip --strip-debug debian/librostlab-blast0-dev/usr/lib/librostlab-blast.a make[1]: Leaving directory `/«PKGBUILDDIR»' dh_makeshlibs -a -O--parallel rm -f debian/librostlab-blast0/DEBIAN/shlibs echo 'librostlab-blast 0 librostlab-blast0' >>debian/librostlab-blast0/DEBIAN/shlibs echo "# Automatically added by dh_makeshlibs">> debian/librostlab-blast0.postinst.debhelper sed "" /usr/share/debhelper/autoscripts/postinst-makeshlibs >> debian/librostlab-blast0.postinst.debhelper echo '# End automatically added section' >> debian/librostlab-blast0.postinst.debhelper echo "# Automatically added by dh_makeshlibs">> debian/librostlab-blast0.postrm.debhelper sed "" /usr/share/debhelper/autoscripts/postrm-makeshlibs >> debian/librostlab-blast0.postrm.debhelper echo '# End automatically added section' >> debian/librostlab-blast0.postrm.debhelper chmod 644 debian/librostlab-blast0/DEBIAN/shlibs chown 0:0 debian/librostlab-blast0/DEBIAN/shlibs rm -f debian/librostlab-blast0-dev/DEBIAN/shlibs rm -f debian/librostlab-blast0-dbg/DEBIAN/shlibs dh_shlibdeps -a -O--parallel dpkg-shlibdeps -Tdebian/librostlab-blast0.substvars debian/librostlab-blast0/usr/lib/librostlab-blast.so.0.0.0 dpkg-shlibdeps: warning: symbol __aeabi_unwind_cpp_pr1@GCC_3.5 used by debian/librostlab-blast0/usr/lib/librostlab-blast.so.0.0.0 found in none of the libraries. dh_installdeb -a -O--parallel printf '#!/bin/sh set -e ' > debian/librostlab-blast0/DEBIAN/postinst cat debian/librostlab-blast0.postinst.debhelper >> debian/librostlab-blast0/DEBIAN/postinst chown 0:0 debian/librostlab-blast0/DEBIAN/postinst chmod 755 debian/librostlab-blast0/DEBIAN/postinst printf '#!/bin/sh set -e ' > debian/librostlab-blast0/DEBIAN/postrm cat debian/librostlab-blast0.postrm.debhelper >> debian/librostlab-blast0/DEBIAN/postrm chown 0:0 debian/librostlab-blast0/DEBIAN/postrm chmod 755 debian/librostlab-blast0/DEBIAN/postrm dh_gencontrol -a -O--parallel echo misc:Depends= >> debian/librostlab-blast0.substvars dpkg-gencontrol -plibrostlab-blast0 -ldebian/changelog -Tdebian/librostlab-blast0.substvars -Pdebian/librostlab-blast0 chmod 644 debian/librostlab-blast0/DEBIAN/control chown 0:0 debian/librostlab-blast0/DEBIAN/control echo misc:Depends= >> debian/librostlab-blast0-dev.substvars dpkg-gencontrol -plibrostlab-blast0-dev -ldebian/changelog -Tdebian/librostlab-blast0-dev.substvars -Pdebian/librostlab-blast0-dev chmod 644 debian/librostlab-blast0-dev/DEBIAN/control chown 0:0 debian/librostlab-blast0-dev/DEBIAN/control echo misc:Depends= >> debian/librostlab-blast0-dbg.substvars dpkg-gencontrol -plibrostlab-blast0-dbg -ldebian/changelog -Tdebian/librostlab-blast0-dbg.substvars -Pdebian/librostlab-blast0-dbg chmod 644 debian/librostlab-blast0-dbg/DEBIAN/control chown 0:0 debian/librostlab-blast0-dbg/DEBIAN/control dh_md5sums -a -O--parallel (cd debian/librostlab-blast0 >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/librostlab-blast0/DEBIAN/md5sums chown 0:0 debian/librostlab-blast0/DEBIAN/md5sums (cd debian/librostlab-blast0-dev >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/librostlab-blast0-dev/DEBIAN/md5sums chown 0:0 debian/librostlab-blast0-dev/DEBIAN/md5sums (cd debian/librostlab-blast0-dbg >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/librostlab-blast0-dbg/DEBIAN/md5sums chown 0:0 debian/librostlab-blast0-dbg/DEBIAN/md5sums dh_builddeb -a -O--parallel dpkg-deb --build debian/librostlab-blast0 .. dpkg-deb: building package `librostlab-blast0' in `../librostlab-blast0_1.0.0-2_armhf.deb'. dpkg-deb --build debian/librostlab-blast0-dev .. dpkg-deb: building package `librostlab-blast0-dev' in `../librostlab-blast0-dev_1.0.0-2_armhf.deb'. dpkg-deb --build debian/librostlab-blast0-dbg .. dpkg-deb: building package `librostlab-blast0-dbg' in `../librostlab-blast0-dbg_1.0.0-2_armhf.deb'. dpkg-genchanges -B -mbuildd >../librostlab-blast_1.0.0-2_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build librostlab-blast-1.0.0 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120505-1738 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ librostlab-blast_1.0.0-2_armhf.changes: ─────────────────────────────────────── Format: 1.8 Date: Wed, 04 Apr 2012 10:57:21 +0200 Source: librostlab-blast Binary: librostlab-blast0 librostlab-blast0-dev librostlab-blast-doc librostlab-blast0-dbg Architecture: armhf Version: 1.0.0-2 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Laszlo Kajan Description: librostlab-blast-doc - very fast C++ library for parsing the output of NCBI BLAST progra librostlab-blast0 - very fast C++ library for parsing the output of NCBI BLAST progra librostlab-blast0-dbg - debugging symbols for librostlab-blast librostlab-blast0-dev - very fast C++ library for parsing the output of NCBI BLAST progra Changes: librostlab-blast (1.0.0-2) unstable; urgency=low . * Added missing librostlab3-dev dependency to librostlab-blast0-dev. * Mention libzerg in package description. Checksums-Sha1: 7629703b4e3e54a9680ce341006f881251b42127 108790 librostlab-blast0_1.0.0-2_armhf.deb ba0d198e3569d1659d3fdcd5f774e0c7a7f395c2 135524 librostlab-blast0-dev_1.0.0-2_armhf.deb 83b0a72e51385310665badf7ac1407b64e1aa46c 260372 librostlab-blast0-dbg_1.0.0-2_armhf.deb Checksums-Sha256: eca1894392013a9b1b30a2a9a4057c2f63790ce5a310f6a6eb2ec21dd7a5e837 108790 librostlab-blast0_1.0.0-2_armhf.deb 6dc6389cc416c78b6f57a176e210d856ed23c7726d405df7f3d5d582214a1ed7 135524 librostlab-blast0-dev_1.0.0-2_armhf.deb 72f6751d0a51cd40ade8c94b723df95e5733382fc6c6ea5f682200c11388e011 260372 librostlab-blast0-dbg_1.0.0-2_armhf.deb Files: ef08b43061b5a6d871c387a2cce9395f 108790 libs optional librostlab-blast0_1.0.0-2_armhf.deb 6690fc171e5677ba217e8c65e114edc4 135524 libdevel optional librostlab-blast0-dev_1.0.0-2_armhf.deb d2185ffcd43d5c760d13cf8413b8d9e2 260372 debug extra librostlab-blast0-dbg_1.0.0-2_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ librostlab-blast0_1.0.0-2_armhf.deb ─────────────────────────────────── new debian package, version 2.0. size 108790 bytes: control archive= 965 bytes. 826 bytes, 20 lines control 309 bytes, 4 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 37 bytes, 1 lines shlibs Package: librostlab-blast0 Source: librostlab-blast Version: 1.0.0-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 1295 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.4.0) Section: libs Priority: optional Homepage: http://rostlab.org/ Description: very fast C++ library for parsing the output of NCBI BLAST programs This package provides a very fast library for parsing the default output of NCBI BLAST programs into a C++ structure. . libzerg is faster, but it provides only lexing (i.e. it only returns pairs of token identifiers and token string values). librostlab-blast uses a parser generated with bison on top of a flex-generated lexer very similar to that of libzerg. . This package contains the shared library. drwxr-xr-x root/root 0 2012-05-05 17:37 ./ drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/ drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/share/ drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/share/doc/librostlab-blast0/ -rw-r--r-- root/root 252 2012-04-04 02:50 ./usr/share/doc/librostlab-blast0/changelog.Debian.gz -rw-r--r-- root/root 2024 2012-03-30 10:10 ./usr/share/doc/librostlab-blast0/copyright -rw-r--r-- root/root 142 2012-03-29 08:43 ./usr/share/doc/librostlab-blast0/changelog.gz drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/lib/ -rw-r--r-- root/root 1294392 2012-05-05 17:37 ./usr/lib/librostlab-blast.so.0.0.0 lrwxrwxrwx root/root 0 2012-05-05 17:37 ./usr/lib/librostlab-blast.so.0 -> librostlab-blast.so.0.0.0 librostlab-blast0-dev_1.0.0-2_armhf.deb ─────────────────────────────────────── new debian package, version 2.0. size 135524 bytes: control archive= 1082 bytes. 927 bytes, 23 lines control 1018 bytes, 13 lines md5sums Package: librostlab-blast0-dev Source: librostlab-blast Version: 1.0.0-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 1438 Depends: librostlab-blast0 (= 1.0.0-2), librostlab3-dev Suggests: librostlab-blast-doc Provides: librostlab-blast-dev Section: libdevel Priority: optional Homepage: http://rostlab.org/ Description: very fast C++ library for parsing the output of NCBI BLAST programs This package provides a very fast library for parsing the default output of NCBI BLAST programs into a C++ structure. . libzerg is faster, but it provides only lexing (i.e. it only returns pairs of token identifiers and token string values). librostlab-blast uses a parser generated with bison on top of a flex-generated lexer very similar to that of libzerg. . This package contains files necessary for developing applications with librostlab-blast. drwxr-xr-x root/root 0 2012-05-05 17:37 ./ drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/ drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/include/ drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/include/rostlab/ -rw-r--r-- root/root 4598 2012-05-05 17:37 ./usr/include/rostlab/blast-parser-location.h -rw-r--r-- root/root 3360 2012-05-05 17:37 ./usr/include/rostlab/blast-parser-stack.h -rw-r--r-- root/root 4174 2012-05-05 17:37 ./usr/include/rostlab/blast-parser-driver.h -rw-r--r-- root/root 10413 2012-05-05 17:37 ./usr/include/rostlab/blast-result.h -rw-r--r-- root/root 4465 2012-05-05 17:37 ./usr/include/rostlab/blast-parser-position.h -rw-r--r-- root/root 10374 2012-05-05 17:37 ./usr/include/rostlab/blast-parser-parser.h drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/share/ drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/share/doc/librostlab-blast0-dev/ -rw-r--r-- root/root 252 2012-04-04 02:50 ./usr/share/doc/librostlab-blast0-dev/changelog.Debian.gz -rw-r--r-- root/root 2024 2012-03-30 10:10 ./usr/share/doc/librostlab-blast0-dev/copyright -rw-r--r-- root/root 142 2012-03-29 08:43 ./usr/share/doc/librostlab-blast0-dev/changelog.gz drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/share/doc/librostlab-blast0-dev/examples/ -rw-r--r-- root/root 324 2012-03-29 05:22 ./usr/share/doc/librostlab-blast0-dev/examples/parseblast.cpp -rw-r--r-- root/root 1580 2012-03-27 09:26 ./usr/share/doc/librostlab-blast0-dev/examples/converged.ali.gz drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/lib/ -rw-r--r-- root/root 1388480 2012-05-05 17:37 ./usr/lib/librostlab-blast.a -rw-r--r-- root/root 1000 2012-05-05 17:37 ./usr/lib/librostlab-blast.la lrwxrwxrwx root/root 0 2012-05-05 17:37 ./usr/lib/librostlab-blast.so -> librostlab-blast.so.0.0.0 librostlab-blast0-dbg_1.0.0-2_armhf.deb ─────────────────────────────────────── new debian package, version 2.0. size 260372 bytes: control archive= 557 bytes. 422 bytes, 12 lines control 335 bytes, 4 lines md5sums Package: librostlab-blast0-dbg Source: librostlab-blast Version: 1.0.0-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 816 Depends: librostlab-blast0 (= 1.0.0-2) Section: debug Priority: extra Homepage: http://rostlab.org/ Description: debugging symbols for librostlab-blast This package provides the detached debug symbols for librostlab-blast. drwxr-xr-x root/root 0 2012-05-05 17:37 ./ drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/ drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/share/ drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/share/doc/librostlab-blast0-dbg/ -rw-r--r-- root/root 252 2012-04-04 02:50 ./usr/share/doc/librostlab-blast0-dbg/changelog.Debian.gz -rw-r--r-- root/root 2024 2012-03-30 10:10 ./usr/share/doc/librostlab-blast0-dbg/copyright -rw-r--r-- root/root 142 2012-03-29 08:43 ./usr/share/doc/librostlab-blast0-dbg/changelog.gz drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/lib/ drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/lib/debug/ drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/lib/debug/usr/ drwxr-xr-x root/root 0 2012-05-05 17:37 ./usr/lib/debug/usr/lib/ -rw-r--r-- root/root 792169 2012-05-05 17:37 ./usr/lib/debug/usr/lib/librostlab-blast.so.0.0.0 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: autotools-dev* bison* bsdmainutils* debhelper* doxygen* ed* file* flex* fontconfig* fontconfig-config* gettext* gettext-base* graphviz* groff-base* html2text* intltool-debian* latex-xcolor* libbison-dev* libcairo2* libcdt4* libcgraph5* libcroco3* libdatrie1* libexpat1* libffi5* libfontconfig1* libfreetype6* libgd2-noxpm* libglib2.0-0* libgraph4* libgraphite3* libgvc5* libgvpr1* libice6* libjpeg8* libkpathsea6* liblcms1* libmagic1* libopenjpeg2* libpango1.0-0* libpaper-utils* libpaper1* libpathplan4* libpcre3* libpipeline1* libpixman-1-0* libpng12-0* libpoppler13* libptexenc1* librostlab3* librostlab3-dev* libsm6* libthai-data* libthai0* libunistring0* libx11-6* libx11-data* libxau6* libxaw7* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxdot4* libxext6* libxft2* libxml2* libxmu6* libxpm4* libxrender1* libxt6* luatex* m4* man-db* mime-support* po-debconf* preview-latex-style* sbuild-build-depends-core-dummy* sbuild-build-depends-librostlab-blast-dummy* tex-common* texlive-base* texlive-binaries* texlive-common* texlive-doc-base* texlive-fonts-recommended* texlive-latex-base* texlive-latex-extra* texlive-latex-recommended* texlive-pictures* ttf-dejavu-core* ttf-marvosym* x11-common* 0 upgraded, 0 newly installed, 92 to remove and 3 not upgraded. After this operation, 223 MB disk space will be freed. (Reading database ... 25757 files and directories currently installed.) Removing sbuild-build-depends-librostlab-blast-dummy ... Removing autotools-dev ... Removing bison ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing doxygen ... Removing texlive-latex-extra ... Purging configuration files for texlive-latex-extra ... Removing texlive-pictures ... Purging configuration files for texlive-pictures ... Removing latex-xcolor ... Purging configuration files for latex-xcolor ... Removing texlive-latex-recommended ... Purging configuration files for texlive-latex-recommended ... Removing texlive-latex-base ... Purging configuration files for texlive-latex-base ... Removing texlive-fonts-recommended ... Purging configuration files for texlive-fonts-recommended ... Removing texlive-base ... Purging configuration files for texlive-base ... Removing texlive-binaries ... Removing ed ... Removing file ... Removing flex ... Removing graphviz ... Purging configuration files for graphviz ... Removing libgvc5 ... Purging configuration files for libgvc5 ... Removing libpango1.0-0:armhf ... Purging configuration files for libpango1.0-0:armhf ... Removing fontconfig ... Purging configuration files for fontconfig ... Removing libxft2:armhf ... Purging configuration files for libxft2:armhf ... Removing luatex ... Removing libpoppler13 ... Purging configuration files for libpoppler13 ... Removing libcairo2:armhf ... Purging configuration files for libcairo2:armhf ... Removing libfontconfig1:armhf ... Purging configuration files for libfontconfig1:armhf ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing gettext-base ... Removing groff-base ... 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Removing libfreetype6:armhf ... Purging configuration files for libfreetype6:armhf ... Removing libgraphite3 ... Purging configuration files for libgraphite3 ... Removing libxaw7:armhf ... Purging configuration files for libxaw7:armhf ... Removing libxmu6:armhf ... Purging configuration files for libxmu6:armhf ... Removing libxt6:armhf ... Purging configuration files for libxt6:armhf ... Removing libsm6:armhf ... Purging configuration files for libsm6:armhf ... Removing libice6:armhf ... Purging configuration files for libice6:armhf ... Removing libjpeg8:armhf ... Removing libptexenc1 ... Purging configuration files for libptexenc1 ... Removing libkpathsea6 ... Purging configuration files for libkpathsea6 ... Removing liblcms1 ... Purging configuration files for liblcms1 ... Removing libmagic1:armhf ... Purging configuration files for libmagic1:armhf ... Removing libopenjpeg2 ... Purging configuration files for libopenjpeg2 ... Removing libpaper-utils ... Removing libpaper1 ... Purging configuration files for libpaper1 ... Removing libpathplan4 ... Purging configuration files for libpathplan4 ... Removing libpcre3:armhf ... Purging configuration files for libpcre3:armhf ... Removing libpipeline1:armhf ... Purging configuration files for libpipeline1:armhf ... Removing libpixman-1-0:armhf ... Purging configuration files for libpixman-1-0:armhf ... Removing libpng12-0:armhf ... Purging configuration files for libpng12-0:armhf ... Removing librostlab3-dev ... Removing librostlab3 ... Purging configuration files for librostlab3 ... Removing libthai-data ... Removing libunistring0:armhf ... Purging configuration files for libunistring0:armhf ... Removing libxrender1:armhf ... Purging configuration files for libxrender1:armhf ... Removing libxpm4:armhf ... Purging configuration files for libxpm4:armhf ... Removing libxext6:armhf ... Purging configuration files for libxext6:armhf ... Removing libx11-6:armhf ... Purging configuration files for libx11-6:armhf ... Removing libx11-data ... Removing libxcb-shm0:armhf ... Purging configuration files for libxcb-shm0:armhf ... Removing libxcb-render0:armhf ... Purging configuration files for libxcb-render0:armhf ... Removing libxcb1:armhf ... Purging configuration files for libxcb1:armhf ... Removing libxau6:armhf ... Purging configuration files for libxau6:armhf ... Removing libxdmcp6:armhf ... Purging configuration files for libxdmcp6:armhf ... Removing libxdot4 ... Purging configuration files for libxdot4 ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing m4 ... Removing mime-support ... Purging configuration files for mime-support ... Removing preview-latex-style ... Purging configuration files for preview-latex-style ... Removing sbuild-build-depends-core-dummy ... Removing texlive-doc-base ... Purging configuration files for texlive-doc-base ... Removing texlive-common ... Removing tex-common ... Purging configuration files for tex-common ... Removing ttf-dejavu-core ... Removing ttf-marvosym ... Removing x11-common ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of stop. Purging configuration files for x11-common ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: armhf Build-Space: 29200 Build-Time: 302 Distribution: testing Install-Time: 254 Job: librostlab-blast_1.0.0-2 Package: librostlab-blast Package-Time: 597 Source-Version: 1.0.0-2 Space: 29200 Status: successful Version: 1.0.0-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120505-1738 Build needed 00:09:57, 29200k disc space