Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages
IDRTCalibration

Can be used to calibrate the RTs of peptide hits linearly to standards.

pot. predecessor tools $ \longrightarrow $ IDRTCalibration $ \longrightarrow $ pot. successor tools
MascotAdapter (or other ID engines) PeptideIndexer (or other tools operating
with identifications (in idXML format))

This tool can be used to linearly align RTs of the idXML-File to a reference. If only calibrant_1_input and calibrant_2_input are given, the first calibrant will result at RT 0.1 and calibrant_2_input will be at 0.9. If one wants to align the RTs of this idXML file to the IDs of a reference file one can also give the RTs of the same calibrant in the reference file (calibrant_1_reference, calibrant_2_reference). If these calibrants are given, the linear transformation (shift and scale) will be calculated such that calibrant_1_input will be at the same RT as calibrant_1_reference and calibrant_2_input will be at the same RT as calibrant_2_reference. This only applies if calibrant_1* has a smaller RT than calibrant_2*. Otherwise the values are swapped.

The command line parameters of this tool are:

INI file documentation of this tool:


OpenMS / TOPP release 1.11.1 Documentation generated on Mon Dec 23 2013 22:47:51 using doxygen 1.8.5