#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/FORMAT/DTAFile.h>
#include <OpenMS/FORMAT/MzXMLFile.h>
#include <OpenMS/FORMAT/SequestInfile.h>
#include <OpenMS/FORMAT/SequestOutfile.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/METADATA/ContactPerson.h>
#include <OpenMS/SYSTEM/File.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/FORMAT/FileTypes.h>
#include <OpenMS/FORMAT/PTMXMLFile.h>
#include <cstdlib>
#include <vector>
#include <algorithm>