org.biojava.bio.structure.io
public class PDBMSDReader extends Object implements StructureIO
Modifier and Type | Field and Description |
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protected DataSource |
dataSource |
Constructor and Description |
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PDBMSDReader() |
Modifier and Type | Method and Description |
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Structure |
getStructureById(String pdbId)
Get a structure by providing a PDB code.
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void |
setDBConnection(String dbDriver,
String dbUrl,
String dbUsername,
String dbPassword)
open a database conenction to the MSD search database
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protected DataSource dataSource
public void setDBConnection(String dbDriver, String dbUrl, String dbUsername, String dbPassword) throws SQLException
dbDriver
- specified which JDBC driver to use e.g.dbUrl
- connection stringdbUsername
- the username in the dbdbPassword
- password to useSQLException
public Structure getStructureById(String pdbId) throws IOException
getStructureById
in interface StructureIO
pdbId
- a String specifying the id value (PDB code)IOException
- ...