public class Confidence extends java.lang.Object implements PhylogenyData, java.lang.Comparable<Confidence>
Modifier and Type | Field and Description |
---|---|
static int |
CONFIDENCE_DEFAULT_VALUE |
static java.text.NumberFormat |
FORMATTER |
Constructor and Description |
---|
Confidence() |
Confidence(double value,
java.lang.String type) |
Confidence(double value,
java.lang.String type,
double sd) |
Modifier and Type | Method and Description |
---|---|
java.lang.StringBuffer |
asSimpleText() |
java.lang.StringBuffer |
asText() |
int |
compareTo(Confidence confidence) |
PhylogenyData |
copy()
Creates a new PhylogenyData object with identical values as this
PhylogenyData.
|
double |
getStandardDeviation() |
java.lang.String |
getType() |
double |
getValue() |
void |
init() |
boolean |
isEqual(PhylogenyData confidence)
Compares this PhylogenyData to PhylogenyData data.
|
void |
setStandardDeviation(double sd) |
void |
setType(java.lang.String type) |
void |
setValue(double value) |
java.lang.StringBuffer |
toNHX() |
void |
toPhyloXML(java.io.Writer writer,
int level,
java.lang.String indentation)
Writes a phyloXML representation of this phylogeny data.
|
java.lang.String |
toString() |
public static final int CONFIDENCE_DEFAULT_VALUE
public static final java.text.NumberFormat FORMATTER
public Confidence()
public Confidence(double value, java.lang.String type)
public Confidence(double value, java.lang.String type, double sd)
public java.lang.StringBuffer asSimpleText()
asSimpleText
in interface PhylogenyData
public java.lang.StringBuffer asText()
asText
in interface PhylogenyData
public int compareTo(Confidence confidence)
compareTo
in interface java.lang.Comparable<Confidence>
public PhylogenyData copy()
PhylogenyData
copy
in interface PhylogenyData
public java.lang.String getType()
public double getValue()
public double getStandardDeviation()
public void init()
public boolean isEqual(PhylogenyData confidence)
PhylogenyData
isEqual
in interface PhylogenyData
public void setType(java.lang.String type)
public void setValue(double value)
public void setStandardDeviation(double sd)
public java.lang.StringBuffer toNHX()
toNHX
in interface PhylogenyData
public void toPhyloXML(java.io.Writer writer, int level, java.lang.String indentation) throws java.io.IOException
PhylogenyData
toPhyloXML
in interface PhylogenyData
java.io.IOException
public java.lang.String toString()
toString
in class java.lang.Object